Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7D

Orthogroup ID

OG0000816

Physical Location & Seq

Genomic Coordinates Forward (+)

4981946 .. 4989667

Gene Structure 7722 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7DG064000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 651 bp

ATGGATTCGGGTCTCAGTGATTGGGTCAAGTACTTGGAGGAGGAGTCATACCCAGTTCCCAGAGACTTCTTGGCCCTTCCCTTGTTTGTTCTCCTCTTCCCTACACTTAGGCTCTTCCTTGATAACTTCGTCTTTGAGAGATTAGCAAGATTGCTTATTGTTGGAAAGGGACAGAAGAAAGTTGAGACACATGATGAGCGGAAAAAAATTACTAAATTTAAAGAGTCGGCATGGAAATGCCTATACTTTTTTTCCGCAGAGGCTTTGGCGCTTTCCATAACATACAATGAGCCTTGGTTCTCAAAAACAAAACACTTTTGGGTAGGGCCTGGCGATCAGGTTTGGCCCGACCAGAAAACGAAATTAAAATTGAAGGCACTCTACATGTATTCTGCTGGGTTTTACATGTACTCCAGCTTTGCTTTGGTGTTTTGGGAAACAAGGCGTTCTGACTTTTGGGTATCAATGGCTCATCATGTAGCAACAACAATATTGATTGTGTTCTCTTACACAGCGAGGCAAGTTTCTAAGGGTTTCTGCTTTTTTTTCTTGGTGTTCAGACTGCTTAGGAAGTATAGTATGAAATCCTCACATTTTTTCATGGTGCATGCTCATGATTCTCAAACAAAGGTTTGTTCAAATTTGGGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000038 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0006082 GO:0006629 GO:0006631 GO:0006633 GO:0006643 GO:0006665 GO:0006672 GO:0006807 GO:0008150 GO:0008152 GO:0008610 GO:0009058 GO:0009987 GO:0012505 GO:0016053 GO:0016410 GO:0016740 GO:0016746 GO:0016747 GO:0019752 GO:0030148 GO:0032787 GO:0034641 GO:0042761 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044271 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046394 GO:0046467 GO:0046513 GO:0050291 GO:0071704 GO:0072330 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00600 ko01100 ko04071 map00600 map01100 map04071

Pfam Domains

Protein Families

TRAM_LAG1_CLN8

Protein Analysis

216

Amino Acids

25.51

Weight (kDa)

9.48

Isoelectric Point (pI)

29.16

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TRAM_LAG1_CLN8	PF03798	72 - 184	7.4e-22	TLC domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000816)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G13580 AT1G13580 AT1G13580 AT3G25540 AT3G25540 AT3G25540
fragaria_vesca	FvH4_4g28710 FvH4_4g28710 FvH4_4g28710 FvH4_4g28710 FvH4_4g28710 FvH4_4g28710 FvH4_5g13070 FvH4_5g13070 FvH4_5g13070 FvH4_5g13070 FvH4_5g13070 FvH4_5g13070 FvH4_5g13070 FvH4_5g13070 FvH4_5g13070 FvH4_5g13070 FvH4_5g13070 FvH4_5g13070 FvH4_5g13070
malus_domestica	MD06G1207300.v1.1 MD13G1053200.v1.1 MD14G1217800.v1.1 MD16G1052200.v1.1
prunus_persica	Prupe.1G298900_v2.0.a1 Prupe.5G211700_v2.0.a1
pyrus_communis	pycom06g18520 pycom13g04760 pycom14g18060 pycom16g04580
rosa_chinensis	RchiOBHm_Chr4g0436831 RchiOBHm_Chr7g0184061
rosa_laevigata	RLG00000005004 RLG00000006493
rosa_multiflora	Rmu_sc0001837.1_g000015 Rmu_sc0004712.1_g000010 Rmu_sc0025350.1_g000014
rosa_roxburghii	Rroxscaffold_2G00110680 Rroxscaffold_3G00269920 Rroxscaffold_5G00377880
rosa_rugosa	Rorug04G0296500 Rorug04G0296500 Rorug06G0461800 Rorug06G0461900 Rorug06G0462000 Rorug06G0462100 Rorug06G0462200 Rorug06G0462300 Rorug06G0462400 Rorug06G0462400
rosa_samantha	Rh2AG465300 Rh2CG361300 Rh2CG451700 Rh4BG359900 Rh4CG374200 Rh4DG353900 Rh6CG248500 Rh6DG208700 Rh7BG063800 Rh7CG064500 Rh7DG064000
rosa_wichuraiana	Rw4G030710 Rw7G005240

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	199
AciI	CCGC	2 cut(s)	199, 255
AcsI	RAATTY	2 cut(s)	215, 640
AfaI	GTAC	2 cut(s)	32, 410
AflIII	ACRYGT	2 cut(s)	384, 405
AgsI	TTSAA	2 cut(s)	373, 639
AjnI	CCWGG	1 cut(s)	328
AluBI	AGCT	1 cut(s)	417
AluI	AGCT	1 cut(s)	417
Alw26I	GTCTC	3 cut(s)	17, 57, 179
AoxI	GGCC	3 cut(s)	72, 326, 344
ApoI	RAATTY	2 cut(s)	215, 640
AspLEI	GCGC	1 cut(s)	271
AspS9I	GGNCC	3 cut(s)	73, 326, 345
BarI	GAAGNNNNNNTAC	2 cut(s)	365, 397
BciT130I	CCWGG	1 cut(s)	330
BcoDI	GTCTC	3 cut(s)	17, 57, 179
BfoI	RGCGCY	1 cut(s)	272
BmcAI	AGTACT	1 cut(s)	32
Bme1390I	CCNGG	1 cut(s)	330
BmgT120I	GGNCC	3 cut(s)	73, 326, 345
BmrFI	CCNGG	1 cut(s)	330
BmrI	ACTGGG	1 cut(s)	47
BmuI	ACTGGG	1 cut(s)	47
BpmI	CTGGAG	1 cut(s)	397
Bpu10I	CCTNAGC	1 cut(s)	566
BsaI	GGTCTC	1 cut(s)	17
BsaJI	CCNNGG	1 cut(s)	293
BsaXI	ACNNNNNCTCC	4 cut(s)	29, 59, 395, 425
Bse1I	ACTGG	1 cut(s)	53
BseBI	CCWGG	1 cut(s)	330
BseDI	CCNNGG	1 cut(s)	293
BseMII	CTCAG	1 cut(s)	28
BseNI	ACTGG	1 cut(s)	53
BseRI	GAGGAG	3 cut(s)	53, 56, 83
BseYI	CCCAGC	1 cut(s)	395
BshFI	GGCC	3 cut(s)	74, 328, 346
BslFI	GGGAC	1 cut(s)	183
BsmAI	GTCTC	3 cut(s)	17, 57, 179
BsmFI	GGGAC	1 cut(s)	183
BsnI	GGCC	3 cut(s)	74, 328, 346
Bso31I	GGTCTC	1 cut(s)	17
Bsp143I	GATC	1 cut(s)	334
BspACI	CCGC	2 cut(s)	199, 255
BspANI	GGCC	3 cut(s)	74, 328, 346
BspCNI	CTCAG	1 cut(s)	27
BspHI	TCATGA	1 cut(s)	613
BspQI	GCTCTTC	1 cut(s)	119
BspTNI	GGTCTC	1 cut(s)	17
BsrBI	CCGCTC	1 cut(s)	199
BsrI	ACTGG	1 cut(s)	53
BssECI	CCNNGG	1 cut(s)	293
BssMI	GATC	1 cut(s)	334
BssT1I	CCWWGG	1 cut(s)	293
Bst2UI	CCWGG	1 cut(s)	330
Bst6I	CTCTTC	2 cut(s)	101, 119
BstC8I	GCNNGC	1 cut(s)	609
BstDEI	CTNAG	4 cut(s)	14, 107, 528, 566
BstH2I	RGCGCY	1 cut(s)	272
BstHHI	GCGC	1 cut(s)	271
BstKTI	GATC	1 cut(s)	337
BstMAI	GTCTC	3 cut(s)	17, 57, 179
BstMBI	GATC	1 cut(s)	334
BstNI	CCWGG	1 cut(s)	330
BstNSI	RCATGY	3 cut(s)	388, 409, 611
BstSCI	CCNGG	1 cut(s)	328
BsuRI	GGCC	3 cut(s)	74, 328, 346
BtsIMutI	CAGTG	1 cut(s)	22
Cac8I	GCNNGC	1 cut(s)	609
CciI	TCATGA	1 cut(s)	613
CfoI	GCGC	1 cut(s)	271
Cfr13I	GGNCC	3 cut(s)	73, 326, 345
Csp6I	GTAC	2 cut(s)	31, 409
CviAII	CATG	8 cut(s)	191, 231, 385, 406, 476, 601, 608, 614
CviJI	RGCY	9 cut(s)	74, 112, 263, 292, 328, 346, 417, 470, 648
CviKI_1	RGCY	9 cut(s)	74, 112, 263, 292, 328, 346, 417, 470, 648
CviQI	GTAC	2 cut(s)	31, 409
DdeI	CTNAG	4 cut(s)	14, 107, 528, 566
DpnI	GATC	1 cut(s)	336
DpnII	GATC	1 cut(s)	334
DraI	TTTAAA	1 cut(s)	220
Eam1104I	CTCTTC	2 cut(s)	101, 119
EarI	CTCTTC	2 cut(s)	101, 119
Eco130I	CCWWGG	1 cut(s)	293
Eco31I	GGTCTC	1 cut(s)	17
EcoO109I	RGGNCCY	1 cut(s)	326
EcoRII	CCWGG	1 cut(s)	328
EcoT14I	CCWWGG	1 cut(s)	293
ErhI	CCWWGG	1 cut(s)	293
FaeI	CATG	8 cut(s)	194, 234, 388, 409, 479, 604, 611, 617
FaqI	GGGAC	1 cut(s)	183
FatI	CATG	8 cut(s)	190, 230, 384, 405, 475, 600, 607, 613
GlaI	GCGC	1 cut(s)	270
GsaI	CCCAGC	1 cut(s)	399
GsuI	CTGGAG	1 cut(s)	397
HaeII	RGCGCY	1 cut(s)	272
HaeIII	GGCC	3 cut(s)	74, 328, 346
HhaI	GCGC	1 cut(s)	271
Hin1II	CATG	8 cut(s)	194, 234, 388, 409, 479, 604, 611, 617
Hin6I	GCGC	1 cut(s)	269
HinP1I	GCGC	1 cut(s)	269
HinfI	GANTC	4 cut(s)	5, 44, 224, 617
Hpy188I	TCNGA	2 cut(s)	451, 560
Hpy188III	TCNNGA	1 cut(s)	614
HpyAV	CCTTC	2 cut(s)	86, 367
HpyCH4V	TGCA	1 cut(s)	607
HpyF3I	CTNAG	4 cut(s)	14, 107, 528, 566
Hsp92II	CATG	8 cut(s)	194, 234, 388, 409, 479, 604, 611, 617
HspAI	GCGC	1 cut(s)	269
Kzo9I	GATC	1 cut(s)	334
LguI	GCTCTTC	1 cut(s)	119
LpnPI	CCDG	8 cut(s)	66, 73, 315, 323, 342, 365, 381, 427
MalI	GATC	1 cut(s)	336
MbiI	CCGCTC	1 cut(s)	199
MboI	GATC	1 cut(s)	334
MboII	GAAGA	3 cut(s)	88, 106, 187
MluCI	AATT	5 cut(s)	207, 215, 362, 368, 640
MlyI	GAGTC	2 cut(s)	53, 233
MmeI	TCCRAC	1 cut(s)	142
MnlI	CCTC	6 cut(s)	31, 34, 104, 253, 510, 598
MseI	TTAA	2 cut(s)	219, 365
MslI	CAYNNNNRTG	2 cut(s)	235, 612
MspR9I	CCNGG	1 cut(s)	330
MvaI	CCWGG	1 cut(s)	330
NdeII	GATC	1 cut(s)	334
NlaIII	CATG	8 cut(s)	194, 234, 388, 409, 479, 604, 611, 617
NspI	RCATGY	3 cut(s)	388, 409, 611
PaeI	GCATGC	1 cut(s)	611
PagI	TCATGA	1 cut(s)	613
PciI	ACATGT	2 cut(s)	384, 405
PciSI	GCTCTTC	1 cut(s)	119
PfeI	GAWTC	2 cut(s)	5, 617
PleI	GAGTC	2 cut(s)	52, 232
PpsI	GAGTC	2 cut(s)	52, 232
PscI	ACATGT	2 cut(s)	384, 405
Psp6I	CCWGG	1 cut(s)	328
PspFI	CCCAGC	1 cut(s)	395
PspGI	CCWGG	1 cut(s)	328
PspPI	GGNCC	3 cut(s)	73, 326, 345
RsaI	GTAC	2 cut(s)	32, 410
RsaNI	GTAC	2 cut(s)	31, 409
RseI	CAYNNNNRTG	2 cut(s)	235, 612
SapI	GCTCTTC	1 cut(s)	119
SaqAI	TTAA	2 cut(s)	219, 365
Sau3AI	GATC	1 cut(s)	334
Sau96I	GGNCC	3 cut(s)	73, 326, 345
ScaI	AGTACT	1 cut(s)	32
SchI	GAGTC	2 cut(s)	53, 233
ScrFI	CCNGG	1 cut(s)	330
SetI	ASST	3 cut(s)	342, 419, 633
SmiMI	CAYNNNNRTG	2 cut(s)	235, 612
SphI	GCATGC	1 cut(s)	611
Sse9I	AATT	5 cut(s)	207, 215, 362, 368, 640
SsiI	CCGC	2 cut(s)	199, 255
SspI	AATATT	1 cut(s)	492
StyD4I	CCNGG	1 cut(s)	328
StyI	CCWWGG	1 cut(s)	293
TasI	AATT	5 cut(s)	207, 215, 362, 368, 640
TatI	WGTACW	2 cut(s)	30, 408
TfiI	GAWTC	2 cut(s)	5, 617
Tru1I	TTAA	2 cut(s)	219, 365
Tru9I	TTAA	2 cut(s)	219, 365
TscAI	CASTG	1 cut(s)	22
TspDTI	ATGAA	2 cut(s)	589, 596
TspRI	CASTG	1 cut(s)	22
XapI	RAATTY	2 cut(s)	215, 640
XceI	RCATGY	3 cut(s)	388, 409, 611
XcmI	CCANNNNNNNNNTGG	2 cut(s)	67, 421
ZrmI	AGTACT	1 cut(s)	32

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.