Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0000816

Physical Location & Seq

Genomic Coordinates Forward (+)

35172720 .. 35178545

Gene Structure 5826 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00110680.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 372 bp

ATGGCAGAGGATACCGATGACGAAACACTTGAGGAGGAGGAAGATGATGAGAGTGCGAATGAATATACGAATGATGAAGATGTCAATTGGAAAGCCCGAAGAGCAGTAGCTAAATGCTTAGCGGCATTAATTGTATCTCATCCCGAGATGCTTGCCAAGCTATATGAGGAGAGGAAGATTAGAAAATTCAAGGAATCGGCATGGAAGTGCTTCTACTTTCTTTCAGCAGAGGTTATGGCTCTTTCTTTAACTTATAATGAGACTTGGTTTACTAGTACAAAGTACTTTTGGGTAGGGTTAGGAGATCAGGTTTGGCCTGACCAGAAGACAAAGTCCGGAGCTTTTCTAGCTGAGTTTTCAGCATCTCCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000038 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005794 GO:0005886 GO:0006082 GO:0006629 GO:0006631 GO:0006633 GO:0006643 GO:0006665 GO:0006672 GO:0006807 GO:0008150 GO:0008152 GO:0008610 GO:0009058 GO:0009987 GO:0012505 GO:0016020 GO:0016053 GO:0016410 GO:0016740 GO:0016746 GO:0016747 GO:0019752 GO:0030148 GO:0032787 GO:0034641 GO:0042761 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044271 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046394 GO:0046467 GO:0046513 GO:0050291 GO:0071704 GO:0071944 GO:0072330 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00600 ko01100 ko04071 map00600 map01100 map04071

Pfam Domains

Protein Families

TRAM_LAG1_CLN8

Protein Analysis

123

Amino Acids

14.26

Weight (kDa)

4.5

Isoelectric Point (pI)

31.58

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000816)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G13580 AT1G13580 AT1G13580 AT3G25540 AT3G25540 AT3G25540
fragaria_vesca	FvH4_4g28710 FvH4_4g28710 FvH4_4g28710 FvH4_4g28710 FvH4_4g28710 FvH4_4g28710 FvH4_5g13070 FvH4_5g13070 FvH4_5g13070 FvH4_5g13070 FvH4_5g13070 FvH4_5g13070 FvH4_5g13070 FvH4_5g13070 FvH4_5g13070 FvH4_5g13070 FvH4_5g13070 FvH4_5g13070 FvH4_5g13070
malus_domestica	MD06G1207300.v1.1 MD13G1053200.v1.1 MD14G1217800.v1.1 MD16G1052200.v1.1
prunus_persica	Prupe.1G298900_v2.0.a1 Prupe.5G211700_v2.0.a1
pyrus_communis	pycom06g18520 pycom13g04760 pycom14g18060 pycom16g04580
rosa_chinensis	RchiOBHm_Chr4g0436831 RchiOBHm_Chr7g0184061
rosa_laevigata	RLG00000005004 RLG00000006493
rosa_multiflora	Rmu_sc0001837.1_g000015 Rmu_sc0004712.1_g000010 Rmu_sc0025350.1_g000014
rosa_roxburghii	Rroxscaffold_2G00110680 Rroxscaffold_3G00269920 Rroxscaffold_5G00377880
rosa_rugosa	Rorug04G0296500 Rorug04G0296500 Rorug06G0461800 Rorug06G0461900 Rorug06G0462000 Rorug06G0462100 Rorug06G0462200 Rorug06G0462300 Rorug06G0462400 Rorug06G0462400
rosa_samantha	Rh2AG465300 Rh2CG361300 Rh2CG451700 Rh4BG359900 Rh4CG374200 Rh4DG353900 Rh6CG248500 Rh6DG208700 Rh7BG063800 Rh7CG064500 Rh7DG064000
rosa_wichuraiana	Rw4G030710 Rw7G005240

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	255
AccIII	TCCGGA	1 cut(s)	335
AciI	CCGC	1 cut(s)	122
AcsI	RAATTY	1 cut(s)	185
AfaI	GTAC	2 cut(s)	277, 284
AgsI	TTSAA	1 cut(s)	190
AhlI	ACTAGT	1 cut(s)	272
AluBI	AGCT	4 cut(s)	110, 160, 341, 350
AluI	AGCT	4 cut(s)	110, 160, 341, 350
Alw26I	GTCTC	1 cut(s)	254
Ama87I	CYCGRG	1 cut(s)	143
Aor13HI	TCCGGA	1 cut(s)	335
AoxI	GGCC	1 cut(s)	314
ApoI	RAATTY	1 cut(s)	185
AseI	ATTAAT	1 cut(s)	128
Asp700I	GAANNNNTTC	1 cut(s)	209
AvaI	CYCGRG	1 cut(s)	143
BarI	GAAGNNNNNNTAC	2 cut(s)	197, 229
BbsI	GAAGAC	1 cut(s)	332
BcgI	CGANNNNNNTGC	2 cut(s)	134, 168
BciVI	GTATCC	1 cut(s)	4
BcoDI	GTCTC	1 cut(s)	254
BcuI	ACTAGT	1 cut(s)	272
BfaI	CTAG	2 cut(s)	273, 347
BfuI	GTATCC	1 cut(s)	4
BisI	GCNGC	1 cut(s)	123
BlpI	GCTNAGC	1 cut(s)	118
BlsI	GCNGC	1 cut(s)	124
BmcAI	AGTACT	1 cut(s)	284
BmeT110I	CYCGRG	1 cut(s)	143
BmsI	GCATC	1 cut(s)	138
BpiI	GAAGAC	1 cut(s)	332
Bpu1102I	GCTNAGC	1 cut(s)	118
BpuEI	CTTGAG	1 cut(s)	50
BsaWI	WCCGGW	1 cut(s)	335
BsaXI	ACNNNNNCTCC	2 cut(s)	294, 324
BseAI	TCCGGA	1 cut(s)	335
BseGI	GGATG	1 cut(s)	139
BseMII	CTCAG	1 cut(s)	342
BseRI	GAGGAG	3 cut(s)	47, 50, 182
BshFI	GGCC	1 cut(s)	316
BsiHKCI	CYCGRG	1 cut(s)	143
BsiSI	CCGG	1 cut(s)	336
BsmAI	GTCTC	1 cut(s)	254
BsnI	GGCC	1 cut(s)	316
BsoBI	CYCGRG	1 cut(s)	143
Bsp13I	TCCGGA	1 cut(s)	335
Bsp143I	GATC	1 cut(s)	304
Bsp1720I	GCTNAGC	1 cut(s)	118
BspACI	CCGC	1 cut(s)	122
BspANI	GGCC	1 cut(s)	316
BspCNI	CTCAG	1 cut(s)	343
BspEI	TCCGGA	1 cut(s)	335
BspQI	GCTCTTC	1 cut(s)	94
BssMI	GATC	1 cut(s)	304
Bst6I	CTCTTC	1 cut(s)	94
BstC8I	GCNNGC	1 cut(s)	153
BstDEI	CTNAG	2 cut(s)	118, 351
BstF5I	GGATG	1 cut(s)	139
BstKTI	GATC	1 cut(s)	307
BstMAI	GTCTC	1 cut(s)	254
BstMBI	GATC	1 cut(s)	304
BstMWI	GCNNNNNNNGC	3 cut(s)	101, 157, 347
BstV2I	GAAGAC	1 cut(s)	332
BsuI	GTATCC	1 cut(s)	4
BsuRI	GGCC	1 cut(s)	316
BtsCI	GGATG	1 cut(s)	139
Cac8I	GCNNGC	1 cut(s)	153
Csp6I	GTAC	2 cut(s)	276, 283
CviAII	CATG	1 cut(s)	201
CviJI	RGCY	7 cut(s)	95, 110, 160, 239, 316, 341, 350
CviKI_1	RGCY	7 cut(s)	95, 110, 160, 239, 316, 341, 350
CviQI	GTAC	2 cut(s)	276, 283
DdeI	CTNAG	2 cut(s)	118, 351
DpnI	GATC	1 cut(s)	306
DpnII	GATC	1 cut(s)	304
Eam1104I	CTCTTC	1 cut(s)	94
EarI	CTCTTC	1 cut(s)	94
Eco88I	CYCGRG	1 cut(s)	143
FaeI	CATG	1 cut(s)	204
FaiI	YATR	7 cut(s)	66, 163, 165, 202, 236, 255, 370
FatI	CATG	1 cut(s)	200
Fnu4HI	GCNGC	1 cut(s)	123
FokI	GGATG	1 cut(s)	126
Fsp4HI	GCNGC	1 cut(s)	123
FspBI	CTAG	2 cut(s)	273, 347
GluI	GCNGC	1 cut(s)	123
HaeIII	GGCC	1 cut(s)	316
HapII	CCGG	1 cut(s)	336
Hin1II	CATG	1 cut(s)	204
HinfI	GANTC	1 cut(s)	194
HpaII	CCGG	1 cut(s)	336
Hpy166II	GTNNAC	1 cut(s)	270
Hpy188III	TCNNGA	2 cut(s)	143, 336
Hpy8I	GTNNAC	1 cut(s)	270
HpyF10VI	GCNNNNNNNGC	3 cut(s)	101, 157, 347
HpyF3I	CTNAG	2 cut(s)	118, 351
Hsp92II	CATG	1 cut(s)	204
Kpn2I	TCCGGA	1 cut(s)	335
Kzo9I	GATC	1 cut(s)	304
LguI	GCTCTTC	1 cut(s)	94
LmnI	GCTCC	1 cut(s)	338
LpnPI	CCDG	4 cut(s)	293, 330, 335, 349
LweI	GCATC	1 cut(s)	138
MaeI	CTAG	2 cut(s)	273, 347
MalI	GATC	1 cut(s)	306
MboI	GATC	1 cut(s)	304
MboII	GAAGA	5 cut(s)	53, 89, 111, 187, 337
MfeI	CAATTG	1 cut(s)	85
MluCI	AATT	3 cut(s)	85, 129, 185
MnlI	CCTC	6 cut(s)	25, 28, 31, 160, 165, 223
MroI	TCCGGA	1 cut(s)	335
MroXI	GAANNNNTTC	1 cut(s)	209
MseI	TTAA	2 cut(s)	128, 248
MslI	CAYNNNNRTG	1 cut(s)	205
MspI	CCGG	1 cut(s)	336
MunI	CAATTG	1 cut(s)	85
MwoI	GCNNNNNNNGC	3 cut(s)	101, 157, 347
NdeII	GATC	1 cut(s)	304
NlaIII	CATG	1 cut(s)	204
PciSI	GCTCTTC	1 cut(s)	94
PdmI	GAANNNNTTC	1 cut(s)	209
PfeI	GAWTC	1 cut(s)	194
PflFI	GACNNNGTC	1 cut(s)	331
PkrI	GCNGC	1 cut(s)	124
PshBI	ATTAAT	1 cut(s)	128
PsiI	TTATAA	1 cut(s)	255
PsyI	GACNNNGTC	1 cut(s)	331
RsaI	GTAC	2 cut(s)	277, 284
RsaNI	GTAC	2 cut(s)	276, 283
RseI	CAYNNNNRTG	1 cut(s)	205
SapI	GCTCTTC	1 cut(s)	94
SaqAI	TTAA	2 cut(s)	128, 248
SatI	GCNGC	1 cut(s)	123
Sau3AI	GATC	1 cut(s)	304
ScaI	AGTACT	1 cut(s)	284
SetI	ASST	6 cut(s)	112, 162, 234, 312, 343, 352
SfaNI	GCATC	1 cut(s)	138
SmiMI	CAYNNNNRTG	1 cut(s)	205
SmlI	CTYRAG	1 cut(s)	29
SmoI	CTYRAG	1 cut(s)	29
SpeI	ACTAGT	1 cut(s)	272
Sse9I	AATT	3 cut(s)	85, 129, 185
SsiI	CCGC	1 cut(s)	122
SspMI	CTAG	2 cut(s)	273, 347
TasI	AATT	3 cut(s)	85, 129, 185
TatI	WGTACW	2 cut(s)	275, 282
TauI	GCSGC	1 cut(s)	125
TfiI	GAWTC	1 cut(s)	194
Tru1I	TTAA	2 cut(s)	128, 248
Tru9I	TTAA	2 cut(s)	128, 248
TspDTI	ATGAA	2 cut(s)	75, 90
Tth111I	GACNNNGTC	1 cut(s)	331
VspI	ATTAAT	1 cut(s)	128
XapI	RAATTY	1 cut(s)	185
XmnI	GAANNNNTTC	1 cut(s)	209
XspI	CTAG	2 cut(s)	273, 347
ZrmI	AGTACT	1 cut(s)	284

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.