Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0000816

Physical Location & Seq

Genomic Coordinates Reverse (-)

48933171 .. 48934492

Gene Structure 1322 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG361300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 423 bp

ATGGCCTCATCAACGGCTCCGAACAAGGACGGCTCCTCGCCTGAGGACGACCCATTTTGTCCTCCACAGGGGTTTTGGGCAGGACGCCTTGATGCAATTCCAGTTGGGGAAGTTCGATCAGTGCCTCATGGCCTTGCAGGAGTGCCTCAAGAAGAAGGCCGGCGATCCCAAAAGGATACTAATGACGAAACACTTGAGGAGGAGGAAGATGATGAGAGTGCGAATGAATTTACGAATGATGAAGCTGTCAATTGGAAAGCCAGAAGAGCAGCAACTAAATGCTTAGCGGCATTAATTGTATCTCATCCTGAGATGCTTGCCAAGCTATATGAGGAGATGGATGTTTTCAGTACTTTCACTGAGCTCTTGCAGCAAACTGGAAATATCACAAAGGGCCAGTTTGACATTAGTGAACAGAGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003002 GO:0003006 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005886 GO:0006464 GO:0006807 GO:0007275 GO:0007389 GO:0008150 GO:0008152 GO:0009719 GO:0009725 GO:0009733 GO:0009791 GO:0009987 GO:0010033 GO:0010051 GO:0010228 GO:0010265 GO:0016020 GO:0016043 GO:0016567 GO:0019538 GO:0022414 GO:0022607 GO:0030312 GO:0032446 GO:0032501 GO:0032502 GO:0036211 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0048608 GO:0048731 GO:0048856 GO:0050896 GO:0061458 GO:0065003 GO:0070647 GO:0071704 GO:0071840 GO:0071944 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TIP120

Protein Analysis

140

Amino Acids

15.4

Weight (kDa)

4.3

Isoelectric Point (pI)

72.04

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000816)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G13580 AT1G13580 AT1G13580 AT3G25540 AT3G25540 AT3G25540
fragaria_vesca	FvH4_4g28710 FvH4_4g28710 FvH4_4g28710 FvH4_4g28710 FvH4_4g28710 FvH4_4g28710 FvH4_5g13070 FvH4_5g13070 FvH4_5g13070 FvH4_5g13070 FvH4_5g13070 FvH4_5g13070 FvH4_5g13070 FvH4_5g13070 FvH4_5g13070 FvH4_5g13070 FvH4_5g13070 FvH4_5g13070 FvH4_5g13070
malus_domestica	MD06G1207300.v1.1 MD13G1053200.v1.1 MD14G1217800.v1.1 MD16G1052200.v1.1
prunus_persica	Prupe.1G298900_v2.0.a1 Prupe.5G211700_v2.0.a1
pyrus_communis	pycom06g18520 pycom13g04760 pycom14g18060 pycom16g04580
rosa_chinensis	RchiOBHm_Chr4g0436831 RchiOBHm_Chr7g0184061
rosa_laevigata	RLG00000005004 RLG00000006493
rosa_multiflora	Rmu_sc0001837.1_g000015 Rmu_sc0004712.1_g000010 Rmu_sc0025350.1_g000014
rosa_roxburghii	Rroxscaffold_2G00110680 Rroxscaffold_3G00269920 Rroxscaffold_5G00377880
rosa_rugosa	Rorug04G0296500 Rorug04G0296500 Rorug06G0461800 Rorug06G0461900 Rorug06G0462000 Rorug06G0462100 Rorug06G0462200 Rorug06G0462300 Rorug06G0462400 Rorug06G0462400
rosa_samantha	Rh2AG465300 Rh2CG361300 Rh2CG451700 Rh4BG359900 Rh4CG374200 Rh4DG353900 Rh6CG248500 Rh6DG208700 Rh7BG063800 Rh7CG064500 Rh7DG064000
rosa_wichuraiana	Rw4G030710 Rw7G005240

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	287
AclWI	GGATC	1 cut(s)	159
AcsI	RAATTY	1 cut(s)	227
AcyI	GRCGYC	1 cut(s)	85
AfaI	GTAC	1 cut(s)	352
AfiI	CCNNNNNNNGG	1 cut(s)	68
AluBI	AGCT	3 cut(s)	245, 325, 364
AluI	AGCT	3 cut(s)	245, 325, 364
Alw21I	GWGCWC	1 cut(s)	366
AlwI	GGATC	1 cut(s)	159
AoxI	GGCC	4 cut(s)	3, 130, 157, 394
ApeKI	GCWGC	2 cut(s)	269, 370
ApoI	RAATTY	1 cut(s)	227
AseI	ATTAAT	1 cut(s)	293
AspS9I	GGNCC	1 cut(s)	394
AxyI	CCTNAGG	1 cut(s)	42
BanII	GRGCYC	1 cut(s)	366
Bbv12I	GWGCWC	1 cut(s)	366
BbvI	GCAGC	2 cut(s)	281, 382
BccI	CCATC	1 cut(s)	331
BceAI	ACGGC	2 cut(s)	30, 46
BciVI	GTATCC	1 cut(s)	169
BfuI	GTATCC	1 cut(s)	169
BisI	GCNGC	3 cut(s)	270, 288, 371
BlpI	GCTNAGC	1 cut(s)	283
BlsI	GCNGC	3 cut(s)	271, 289, 372
BmcAI	AGTACT	1 cut(s)	352
BmgT120I	GGNCC	1 cut(s)	394
BmiI	GGNNCC	2 cut(s)	18, 34
BmsI	GCATC	2 cut(s)	82, 303
Bpu1102I	GCTNAGC	1 cut(s)	283
BpuEI	CTTGAG	2 cut(s)	132, 215
BsaHI	GRCGYC	1 cut(s)	85
Bsc4I	CCNNNNNNNGG	1 cut(s)	68
Bse118I	RCCGGY	1 cut(s)	159
Bse1I	ACTGG	3 cut(s)	101, 382, 397
Bse21I	CCTNAGG	1 cut(s)	42
BseGI	GGATG	2 cut(s)	304, 346
BseLI	CCNNNNNNNGG	1 cut(s)	68
BseMII	CTCAG	3 cut(s)	33, 300, 351
BseNI	ACTGG	3 cut(s)	101, 382, 397
BseRI	GAGGAG	4 cut(s)	25, 212, 215, 347
BseXI	GCAGC	2 cut(s)	281, 382
BshFI	GGCC	4 cut(s)	5, 132, 159, 396
BsiHKAI	GWGCWC	1 cut(s)	366
BsiSI	CCGG	1 cut(s)	160
BslI	CCNNNNNNNGG	1 cut(s)	68
BsnI	GGCC	4 cut(s)	5, 132, 159, 396
Bsp1286I	GDGCHC	1 cut(s)	366
Bsp143I	GATC	2 cut(s)	116, 164
Bsp1720I	GCTNAGC	1 cut(s)	283
BspACI	CCGC	1 cut(s)	287
BspANI	GGCC	4 cut(s)	5, 132, 159, 396
BspCNI	CTCAG	3 cut(s)	34, 301, 352
BspLI	GGNNCC	2 cut(s)	18, 34
BspPI	GGATC	1 cut(s)	159
BspQI	GCTCTTC	1 cut(s)	259
BsrFI	RCCGGY	1 cut(s)	159
BsrI	ACTGG	3 cut(s)	101, 382, 397
BssAI	RCCGGY	1 cut(s)	159
BssMI	GATC	2 cut(s)	116, 164
BssNI	GRCGYC	1 cut(s)	85
Bst6I	CTCTTC	1 cut(s)	259
BstACI	GRCGYC	1 cut(s)	85
BstC8I	GCNNGC	2 cut(s)	161, 318
BstDEI	CTNAG	4 cut(s)	42, 283, 309, 360
BstF5I	GGATG	2 cut(s)	304, 346
BstKTI	GATC	2 cut(s)	119, 167
BstMBI	GATC	2 cut(s)	116, 164
BstMWI	GCNNNNNNNGC	3 cut(s)	266, 322, 370
BstV1I	GCAGC	2 cut(s)	281, 382
Bsu36I	CCTNAGG	1 cut(s)	42
BsuI	GTATCC	1 cut(s)	169
BsuRI	GGCC	4 cut(s)	5, 132, 159, 396
BtsCI	GGATG	2 cut(s)	304, 346
BtsIMutI	CAGTG	2 cut(s)	126, 357
Cac8I	GCNNGC	2 cut(s)	161, 318
Cfr10I	RCCGGY	1 cut(s)	159
Cfr13I	GGNCC	1 cut(s)	394
CseI	GACGC	1 cut(s)	93
Csp6I	GTAC	1 cut(s)	351
CviAII	CATG	1 cut(s)	128
CviQI	GTAC	1 cut(s)	351
DdeI	CTNAG	4 cut(s)	42, 283, 309, 360
DpnI	GATC	2 cut(s)	118, 166
DpnII	GATC	2 cut(s)	116, 164
Eam1104I	CTCTTC	1 cut(s)	259
EarI	CTCTTC	1 cut(s)	259
Ecl136II	GAGCTC	1 cut(s)	364
Eco24I	GRGCYC	1 cut(s)	366
Eco53kI	GAGCTC	1 cut(s)	364
Eco81I	CCTNAGG	1 cut(s)	42
EcoICRI	GAGCTC	1 cut(s)	364
EcoT38I	GRGCYC	1 cut(s)	366
FaeI	CATG	1 cut(s)	131
FaiI	YATR	3 cut(s)	129, 328, 330
FatI	CATG	1 cut(s)	127
Fnu4HI	GCNGC	3 cut(s)	270, 288, 371
FokI	GGATG	2 cut(s)	291, 353
FriOI	GRGCYC	1 cut(s)	366
Fsp4HI	GCNGC	3 cut(s)	270, 288, 371
GluI	GCNGC	3 cut(s)	270, 288, 371
HaeIII	GGCC	4 cut(s)	5, 132, 159, 396
HapII	CCGG	1 cut(s)	160
HgaI	GACGC	1 cut(s)	93
Hin1I	GRCGYC	1 cut(s)	85
Hin1II	CATG	1 cut(s)	131
HpaII	CCGG	1 cut(s)	160
Hpy166II	GTNNAC	1 cut(s)	413
Hpy188I	TCNGA	1 cut(s)	21
Hpy188III	TCNNGA	2 cut(s)	149, 308
Hpy8I	GTNNAC	1 cut(s)	413
HpyAV	CCTTC	1 cut(s)	149
HpyCH4V	TGCA	3 cut(s)	95, 137, 370
HpyF10VI	GCNNNNNNNGC	3 cut(s)	266, 322, 370
HpyF3I	CTNAG	4 cut(s)	42, 283, 309, 360
Hsp92I	GRCGYC	1 cut(s)	85
Hsp92II	CATG	1 cut(s)	131
KroI	GCCGGC	1 cut(s)	159
KroNI	GCCGGC	1 cut(s)	161
Kzo9I	GATC	2 cut(s)	116, 164
LguI	GCTCTTC	1 cut(s)	259
LmnI	GCTCC	2 cut(s)	22, 38
Lsp1109I	GCAGC	2 cut(s)	281, 382
LweI	GCATC	2 cut(s)	82, 303
MalI	GATC	2 cut(s)	118, 166
MboI	GATC	2 cut(s)	116, 164
MboII	GAAGA	3 cut(s)	164, 218, 276
MfeI	CAATTG	1 cut(s)	250
MhlI	GDGCHC	1 cut(s)	366
MluCI	AATT	4 cut(s)	96, 227, 250, 294
MroNI	GCCGGC	1 cut(s)	159
MseI	TTAA	2 cut(s)	293, 421
MspI	CCGG	1 cut(s)	160
MunI	CAATTG	1 cut(s)	250
MwoI	GCNNNNNNNGC	3 cut(s)	266, 322, 370
NaeI	GCCGGC	1 cut(s)	161
NdeII	GATC	2 cut(s)	116, 164
NgoMIV	GCCGGC	1 cut(s)	159
NlaIII	CATG	1 cut(s)	131
NlaIV	GGNNCC	2 cut(s)	18, 34
PciSI	GCTCTTC	1 cut(s)	259
PdiI	GCCGGC	1 cut(s)	161
PkrI	GCNGC	3 cut(s)	271, 289, 372
PshBI	ATTAAT	1 cut(s)	293
Psp124BI	GAGCTC	1 cut(s)	366
PspN4I	GGNNCC	2 cut(s)	18, 34
PspPI	GGNCC	1 cut(s)	394
RsaI	GTAC	1 cut(s)	352
RsaNI	GTAC	1 cut(s)	351
SacI	GAGCTC	1 cut(s)	366
SapI	GCTCTTC	1 cut(s)	259
SaqAI	TTAA	2 cut(s)	293, 421
SatI	GCNGC	3 cut(s)	270, 288, 371
Sau3AI	GATC	2 cut(s)	116, 164
Sau96I	GGNCC	1 cut(s)	394
ScaI	AGTACT	1 cut(s)	352
SduI	GDGCHC	1 cut(s)	366
SetI	ASST	3 cut(s)	247, 327, 366
SfaNI	GCATC	2 cut(s)	82, 303
SmlI	CTYRAG	2 cut(s)	147, 194
SmoI	CTYRAG	2 cut(s)	147, 194
Sse9I	AATT	4 cut(s)	96, 227, 250, 294
SsiI	CCGC	1 cut(s)	287
SstI	GAGCTC	1 cut(s)	366
TaqI	TCGA	1 cut(s)	115
TasI	AATT	4 cut(s)	96, 227, 250, 294
TatI	WGTACW	1 cut(s)	350
TauI	GCSGC	1 cut(s)	290
Tru1I	TTAA	2 cut(s)	293, 421
Tru9I	TTAA	2 cut(s)	293, 421
TscAI	CASTG	2 cut(s)	126, 364
TseI	GCWGC	2 cut(s)	269, 370
TspDTI	ATGAA	2 cut(s)	240, 255
TspRI	CASTG	2 cut(s)	126, 364
VspI	ATTAAT	1 cut(s)	293
XapI	RAATTY	1 cut(s)	227
XcmI	CCANNNNNNNNNTGG	1 cut(s)	72
ZrmI	AGTACT	1 cut(s)	352

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.