Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0000816

Physical Location & Seq

Genomic Coordinates Reverse (-)

64307188 .. 64310360

Gene Structure 3173 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000005004

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1116 bp

ATGGATTCGGCTCTCAGTGATTGGGTCAAGTACTTGGAGGAGGAGTCGTACCCAGTTCCCAGAGACTTCTTCGTCCTTCCCTTGTTTGTTCTGCTCTTCCCTACACTTAGGCTCTTCCTTGATAAATTCGTCTTTGAGAGATTAGCAAGATGGCTTATTGTTGGAAGGGGACAGAAGAAAGTTGAGACGCATGATGAGCGGAAAAAAATTACTAAATTTAAAGAGTCGGCATGGAAATGCCTATACTTTTTTTCCGCAGAGGCTTTGGCCCTTTCCATAACATACAATGAGCCTTGGTTCTCAAAAACAAAAAACTTTTGGGTAGGGCCTGGCGATCAGGTTTGGCCCGACCAGAAAACAAAATTAAAATTGAAGGCACTCTACATGTATTCTGCTGGGTTTTACATGTACTCCAGCTTTGCTTTGGTGTTTTGGGAAACAAGGCGTTCTGACTTTTGGGTATCAATGGCTCATCATGTAGCAACAACAATATTGATTGTATTCTCTTACACAGCGAGGTTTTCCCGAGTTGGTTCAATCATTTTAGCCCTCCATGAAGGATCTGATGTGTTTTTAGAAATTGCGAAACTGTCAAAATATTGTGGCTTAGAACTGATTGCCAGCGTTTCTTTTGTTATCTTTGTTCTTTCTTGGACAGTTCTACGTCTTATTTACTTTCCCTTCTGGATAATTTGGAGTACCAGCTATGAATCTCTTTTGAATTTGGACAAGGAAAAGCACATGGTGGATGGATCTATATACTATTACTTCAAATCCGCTCATGGGGGAAACTTGAGGATGATGTTCGATCTGATTCTGAAGGTGATGATGATGAACACGATGATTGACAATAAGAAGATAGTTTTAAACATTGAATATTTATACAGGCAAGTGTGTATATCCAGATTATATCCAAAATTCATACATACACAGTTGCTTGAACAGGTAAATCCTAAGCTGGGCAGTGATCCAGTTAGTTGCATGAAGCGAAACCTAAGCGGGTGTGGTGTGGTGGTCTTGGTCACTTCACCACTGGTGAAAATTGTTGCTAAGCAAACTTCTGCTCTTGGGTTAGTAGCGCTCCCCTCCCACAACAGGTGGGTTGCAAATCAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000038 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0006082 GO:0006629 GO:0006631 GO:0006633 GO:0006643 GO:0006665 GO:0006672 GO:0006807 GO:0008150 GO:0008152 GO:0008610 GO:0009058 GO:0009987 GO:0012505 GO:0016053 GO:0016410 GO:0016740 GO:0016746 GO:0016747 GO:0019752 GO:0030148 GO:0032787 GO:0034641 GO:0042761 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044271 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046394 GO:0046467 GO:0046513 GO:0050291 GO:0071704 GO:0072330 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00600 ko01100 ko04071 map00600 map01100 map04071

Pfam Domains

Protein Families

TRAM_LAG1_CLN8

Protein Analysis

372

Amino Acids

43.17

Weight (kDa)

9.36

Isoelectric Point (pI)

34.65

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TRAM_LAG1_CLN8	PF03798	72 - 252	9.3e-43	TLC domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0000816)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G13580 AT1G13580 AT1G13580 AT3G25540 AT3G25540 AT3G25540
fragaria_vesca	FvH4_4g28710 FvH4_4g28710 FvH4_4g28710 FvH4_4g28710 FvH4_4g28710 FvH4_4g28710 FvH4_5g13070 FvH4_5g13070 FvH4_5g13070 FvH4_5g13070 FvH4_5g13070 FvH4_5g13070 FvH4_5g13070 FvH4_5g13070 FvH4_5g13070 FvH4_5g13070 FvH4_5g13070 FvH4_5g13070 FvH4_5g13070
malus_domestica	MD06G1207300.v1.1 MD13G1053200.v1.1 MD14G1217800.v1.1 MD16G1052200.v1.1
prunus_persica	Prupe.1G298900_v2.0.a1 Prupe.5G211700_v2.0.a1
pyrus_communis	pycom06g18520 pycom13g04760 pycom14g18060 pycom16g04580
rosa_chinensis	RchiOBHm_Chr4g0436831 RchiOBHm_Chr7g0184061
rosa_laevigata	RLG00000005004 RLG00000006493
rosa_multiflora	Rmu_sc0001837.1_g000015 Rmu_sc0004712.1_g000010 Rmu_sc0025350.1_g000014
rosa_roxburghii	Rroxscaffold_2G00110680 Rroxscaffold_3G00269920 Rroxscaffold_5G00377880
rosa_rugosa	Rorug04G0296500 Rorug04G0296500 Rorug06G0461800 Rorug06G0461900 Rorug06G0462000 Rorug06G0462100 Rorug06G0462200 Rorug06G0462300 Rorug06G0462400 Rorug06G0462400
rosa_samantha	Rh2AG465300 Rh2CG361300 Rh2CG451700 Rh4BG359900 Rh4CG374200 Rh4DG353900 Rh6CG248500 Rh6DG208700 Rh7BG063800 Rh7CG064500 Rh7DG064000
rosa_wichuraiana	Rw4G030710 Rw7G005240

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	71
AccBSI	CCGCTC	2 cut(s)	199, 779
AciI	CCGC	4 cut(s)	199, 255, 777, 999
AclWI	GGATC	3 cut(s)	568, 760, 962
AcsI	RAATTY	4 cut(s)	125, 215, 721, 917
AcuI	CTGAAG	1 cut(s)	839
AdeI	CACNNNGTG	1 cut(s)	745
AfaI	GTAC	4 cut(s)	32, 50, 410, 700
AfeI	AGCGCT	1 cut(s)	1080
AfiI	CCNNNNNNNGG	3 cut(s)	783, 959, 1095
AflIII	ACRYGT	2 cut(s)	384, 405
AgsI	TTSAA	6 cut(s)	373, 537, 721, 772, 875, 941
AjnI	CCWGG	1 cut(s)	328
AluBI	AGCT	3 cut(s)	417, 705, 958
AluI	AGCT	3 cut(s)	417, 705, 958
Alw26I	GTCTC	2 cut(s)	57, 179
AlwI	GGATC	3 cut(s)	568, 760, 962
Ama87I	CYCGRG	1 cut(s)	525
Aor51HI	AGCGCT	1 cut(s)	1080
AoxI	GGCC	3 cut(s)	267, 326, 344
ApoI	RAATTY	4 cut(s)	125, 215, 721, 917
AspLEI	GCGC	1 cut(s)	1081
AspS9I	GGNCC	3 cut(s)	268, 326, 345
AsuHPI	GGTGA	3 cut(s)	835, 1020, 1048
AvaI	CYCGRG	1 cut(s)	525
BarI	GAAGNNNNNNTAC	2 cut(s)	365, 397
BccI	CCATC	2 cut(s)	144, 743
BciT130I	CCWGG	1 cut(s)	330
BcoDI	GTCTC	2 cut(s)	57, 179
BfoI	RGCGCY	1 cut(s)	1082
BlpI	GCTNAGC	1 cut(s)	1050
BmcAI	AGTACT	1 cut(s)	32
Bme1390I	CCNGG	1 cut(s)	330
BmeT110I	CYCGRG	1 cut(s)	525
BmgT120I	GGNCC	3 cut(s)	268, 326, 345
BmrFI	CCNGG	1 cut(s)	330
BmrI	ACTGGG	1 cut(s)	47
BmuI	ACTGGG	1 cut(s)	47
BpmI	CTGGAG	1 cut(s)	397
Bpu10I	CCTNAGC	2 cut(s)	954, 995
Bpu1102I	GCTNAGC	1 cut(s)	1050
BpuEI	CTTGAG	1 cut(s)	814
BsaJI	CCNNGG	1 cut(s)	293
BsaXI	ACNNNNNCTCC	6 cut(s)	29, 32, 59, 62, 395, 425
Bsc4I	CCNNNNNNNGG	3 cut(s)	783, 959, 1095
Bse1I	ACTGG	3 cut(s)	53, 971, 1038
BseBI	CCWGG	1 cut(s)	330
BseDI	CCNNGG	1 cut(s)	293
BseGI	GGATG	2 cut(s)	754, 804
BseLI	CCNNNNNNNGG	3 cut(s)	783, 959, 1095
BseMII	CTCAG	1 cut(s)	28
BseNI	ACTGG	3 cut(s)	53, 971, 1038
BseRI	GAGGAG	2 cut(s)	53, 56
BseYI	CCCAGC	2 cut(s)	395, 958
BshFI	GGCC	3 cut(s)	269, 328, 346
BsiHKCI	CYCGRG	1 cut(s)	525
BslFI	GGGAC	1 cut(s)	183
BslI	CCNNNNNNNGG	3 cut(s)	783, 959, 1095
BsmAI	GTCTC	2 cut(s)	57, 179
BsmBI	CGTCTC	1 cut(s)	179
BsmFI	GGGAC	1 cut(s)	183
BsnI	GGCC	3 cut(s)	269, 328, 346
BsoBI	CYCGRG	1 cut(s)	525
Bsp143I	GATC	5 cut(s)	334, 560, 752, 808, 967
Bsp1720I	GCTNAGC	1 cut(s)	1050
BspACI	CCGC	4 cut(s)	199, 255, 777, 999
BspANI	GGCC	3 cut(s)	269, 328, 346
BspCNI	CTCAG	1 cut(s)	27
BspPI	GGATC	3 cut(s)	568, 760, 962
BspQI	GCTCTTC	2 cut(s)	101, 119
BsrBI	CCGCTC	2 cut(s)	199, 779
BsrI	ACTGG	3 cut(s)	53, 971, 1038
BssECI	CCNNGG	1 cut(s)	293
BssMI	GATC	5 cut(s)	334, 560, 752, 808, 967
BssT1I	CCWWGG	1 cut(s)	293
Bst2UI	CCWGG	1 cut(s)	330
Bst4CI	ACNGT	3 cut(s)	591, 658, 933
Bst6I	CTCTTC	2 cut(s)	101, 119
BstC8I	GCNNGC	1 cut(s)	622
BstDEI	CTNAG	6 cut(s)	14, 107, 607, 954, 995, 1050
BstF5I	GGATG	2 cut(s)	754, 804
BstH2I	RGCGCY	1 cut(s)	1082
BstHHI	GCGC	1 cut(s)	1081
BstKTI	GATC	5 cut(s)	337, 563, 755, 811, 970
BstMAI	GTCTC	2 cut(s)	57, 179
BstMBI	GATC	5 cut(s)	334, 560, 752, 808, 967
BstMWI	GCNNNNNNNGC	1 cut(s)	196
BstNI	CCWGG	1 cut(s)	330
BstNSI	RCATGY	2 cut(s)	388, 409
BstSCI	CCNGG	1 cut(s)	328
BstX2I	RGATCY	2 cut(s)	560, 752
BstYI	RGATCY	2 cut(s)	560, 752
BsuRI	GGCC	3 cut(s)	269, 328, 346
BtsCI	GGATG	2 cut(s)	754, 804
BtsI	GCAGTG	1 cut(s)	970
BtsIMutI	CAGTG	3 cut(s)	22, 970, 1031
Cac8I	GCNNGC	1 cut(s)	622
CfoI	GCGC	1 cut(s)	1081
Cfr13I	GGNCC	3 cut(s)	268, 326, 345
CseI	GACGC	1 cut(s)	196
Csp6I	GTAC	4 cut(s)	31, 49, 409, 699
CviAII	CATG	9 cut(s)	191, 231, 385, 406, 476, 554, 742, 782, 982
CviQI	GTAC	4 cut(s)	31, 49, 409, 699
DdeI	CTNAG	6 cut(s)	14, 107, 607, 954, 995, 1050
DpnI	GATC	5 cut(s)	336, 562, 754, 810, 969
DpnII	GATC	5 cut(s)	334, 560, 752, 808, 967
DraI	TTTAAA	2 cut(s)	220, 867
DraIII	CACNNNGTG	1 cut(s)	745
DrdI	GACNNNNNNGTC	1 cut(s)	71
DseDI	GACNNNNNNGTC	1 cut(s)	71
Eam1104I	CTCTTC	2 cut(s)	101, 119
EarI	CTCTTC	2 cut(s)	101, 119
Eco130I	CCWWGG	1 cut(s)	293
Eco47III	AGCGCT	1 cut(s)	1080
Eco57I	CTGAAG	1 cut(s)	839
Eco88I	CYCGRG	1 cut(s)	525
EcoO109I	RGGNCCY	1 cut(s)	326
EcoRII	CCWGG	1 cut(s)	328
EcoT14I	CCWWGG	1 cut(s)	293
ErhI	CCWWGG	1 cut(s)	293
Esp3I	CGTCTC	1 cut(s)	179
FaeI	CATG	9 cut(s)	194, 234, 388, 409, 479, 557, 745, 785, 985
FaqI	GGGAC	1 cut(s)	183
FatI	CATG	9 cut(s)	190, 230, 384, 405, 475, 553, 741, 781, 981
FauI	CCCGC	1 cut(s)	992
FokI	GGATG	2 cut(s)	761, 811
GlaI	GCGC	1 cut(s)	1080
GsaI	CCCAGC	2 cut(s)	399, 962
GsuI	CTGGAG	1 cut(s)	397
HaeII	RGCGCY	1 cut(s)	1082
HaeIII	GGCC	3 cut(s)	269, 328, 346
HgaI	GACGC	1 cut(s)	196
HhaI	GCGC	1 cut(s)	1081
Hin1II	CATG	9 cut(s)	194, 234, 388, 409, 479, 557, 745, 785, 985
Hin6I	GCGC	1 cut(s)	1079
HinP1I	GCGC	1 cut(s)	1079
HinfI	GANTC	5 cut(s)	5, 44, 224, 710, 814
HphI	GGTGA	3 cut(s)	835, 1020, 1048
Hpy188I	TCNGA	4 cut(s)	451, 565, 813, 819
Hpy188III	TCNNGA	3 cut(s)	525, 685, 903
HpyAV	CCTTC	6 cut(s)	86, 159, 367, 551, 691, 814
HpyCH4III	ACNGT	3 cut(s)	591, 658, 933
HpyCH4IV	ACGT	1 cut(s)	664
HpyCH4V	TGCA	2 cut(s)	981, 1106
HpyF10VI	GCNNNNNNNGC	1 cut(s)	196
HpyF3I	CTNAG	6 cut(s)	14, 107, 607, 954, 995, 1050
HpySE526I	ACGT	1 cut(s)	664
Hsp92II	CATG	9 cut(s)	194, 234, 388, 409, 479, 557, 745, 785, 985
HspAI	GCGC	1 cut(s)	1079
Kzo9I	GATC	5 cut(s)	334, 560, 752, 808, 967
LguI	GCTCTTC	2 cut(s)	101, 119
LmnI	GCTCC	1 cut(s)	1086
MaeII	ACGT	1 cut(s)	664
MaeIII	GTNAC	1 cut(s)	1021
MalI	GATC	5 cut(s)	336, 562, 754, 810, 969
MbiI	CCGCTC	2 cut(s)	199, 779
MboI	GATC	5 cut(s)	334, 560, 752, 808, 967
MboII	GAAGA	5 cut(s)	61, 88, 106, 187, 868
MflI	RGATCY	2 cut(s)	560, 752
MlyI	GAGTC	2 cut(s)	53, 233
MmeI	TCCRAC	1 cut(s)	142
MnlI	CCTC	7 cut(s)	31, 34, 253, 510, 560, 789, 1096
MseI	TTAA	3 cut(s)	219, 365, 866
MslI	CAYNNNNRTG	1 cut(s)	235
MspR9I	CCNGG	1 cut(s)	330
MvaI	CCWGG	1 cut(s)	330
MwoI	GCNNNNNNNGC	1 cut(s)	196
NdeII	GATC	5 cut(s)	334, 560, 752, 808, 967
NlaIII	CATG	9 cut(s)	194, 234, 388, 409, 479, 557, 745, 785, 985
NmuCI	GTSAC	1 cut(s)	1021
NspI	RCATGY	2 cut(s)	388, 409
PciI	ACATGT	2 cut(s)	384, 405
PciSI	GCTCTTC	2 cut(s)	101, 119
PfeI	GAWTC	3 cut(s)	5, 710, 814
PleI	GAGTC	2 cut(s)	52, 232
PpsI	GAGTC	2 cut(s)	52, 232
PscI	ACATGT	2 cut(s)	384, 405
Psp6I	CCWGG	1 cut(s)	328
PspFI	CCCAGC	2 cut(s)	395, 958
PspGI	CCWGG	1 cut(s)	328
PspPI	GGNCC	3 cut(s)	268, 326, 345
PsuI	RGATCY	2 cut(s)	560, 752
RsaI	GTAC	4 cut(s)	32, 50, 410, 700
RsaNI	GTAC	4 cut(s)	31, 49, 409, 699
RseI	CAYNNNNRTG	1 cut(s)	235
SapI	GCTCTTC	2 cut(s)	101, 119
SaqAI	TTAA	3 cut(s)	219, 365, 866
Sau3AI	GATC	5 cut(s)	334, 560, 752, 808, 967
Sau96I	GGNCC	3 cut(s)	268, 326, 345
ScaI	AGTACT	1 cut(s)	32
SchI	GAGTC	2 cut(s)	53, 233
ScrFI	CCNGG	1 cut(s)	330
SmiMI	CAYNNNNRTG	1 cut(s)	235
SmlI	CTYRAG	1 cut(s)	793
SmoI	CTYRAG	1 cut(s)	793
SsiI	CCGC	4 cut(s)	199, 255, 777, 999
SspI	AATATT	3 cut(s)	492, 599, 878
StyD4I	CCNGG	1 cut(s)	328
StyI	CCWWGG	1 cut(s)	293
TaaI	ACNGT	3 cut(s)	591, 658, 933
TaiI	ACGT	1 cut(s)	667
TaqI	TCGA	1 cut(s)	807
TatI	WGTACW	2 cut(s)	30, 408
TfiI	GAWTC	3 cut(s)	5, 710, 814
Tru1I	TTAA	3 cut(s)	219, 365, 866
Tru9I	TTAA	3 cut(s)	219, 365, 866
TscAI	CASTG	3 cut(s)	22, 970, 1038
TseFI	GTSAC	1 cut(s)	1021
Tsp45I	GTSAC	1 cut(s)	1021
TspDTI	ATGAA	5 cut(s)	570, 723, 848, 910, 998
TspRI	CASTG	3 cut(s)	22, 970, 1038
XapI	RAATTY	4 cut(s)	125, 215, 721, 917
XceI	RCATGY	2 cut(s)	388, 409
XcmI	CCANNNNNNNNNTGG	1 cut(s)	421
ZrmI	AGTACT	1 cut(s)	32

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.