Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0000816

Physical Location & Seq

Genomic Coordinates Reverse (-)

61300033 .. 61300931

Gene Structure 899 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG451700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 243 bp

ATGGAAGAGGACACTGATGATGAAACACTTGAGGAGGAGGAAGATGATGAGAGTGCAAATGAATATATGGATGATGAAGATGTCAATTGGAAAGTTCGAAGAACGGCAGCTAAATGCTTAGCGGCATTAATTGTATCTCGACCTGAGATGCTTGCCAAGCTGTATGAGGAGGTTTGTCCAAAATTAATCGGGAGATTTAGAGATACTGAAGAAAATGTCAAGGAAAGCCAGAATAATGGATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003002 GO:0003006 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005886 GO:0006464 GO:0006807 GO:0007275 GO:0007389 GO:0008150 GO:0008152 GO:0009719 GO:0009725 GO:0009733 GO:0009791 GO:0009987 GO:0010033 GO:0010051 GO:0010228 GO:0010265 GO:0016020 GO:0016043 GO:0016567 GO:0019538 GO:0022414 GO:0022607 GO:0030312 GO:0032446 GO:0032501 GO:0032502 GO:0036211 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0048608 GO:0048731 GO:0048856 GO:0050896 GO:0061458 GO:0065003 GO:0070647 GO:0071704 GO:0071840 GO:0071944 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TIP120

Protein Analysis

80

Amino Acids

9.3

Weight (kDa)

4.14

Isoelectric Point (pI)

63.15

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000816)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G13580 AT1G13580 AT1G13580 AT3G25540 AT3G25540 AT3G25540
fragaria_vesca	FvH4_4g28710 FvH4_4g28710 FvH4_4g28710 FvH4_4g28710 FvH4_4g28710 FvH4_4g28710 FvH4_5g13070 FvH4_5g13070 FvH4_5g13070 FvH4_5g13070 FvH4_5g13070 FvH4_5g13070 FvH4_5g13070 FvH4_5g13070 FvH4_5g13070 FvH4_5g13070 FvH4_5g13070 FvH4_5g13070 FvH4_5g13070
malus_domestica	MD06G1207300.v1.1 MD13G1053200.v1.1 MD14G1217800.v1.1 MD16G1052200.v1.1
prunus_persica	Prupe.1G298900_v2.0.a1 Prupe.5G211700_v2.0.a1
pyrus_communis	pycom06g18520 pycom13g04760 pycom14g18060 pycom16g04580
rosa_chinensis	RchiOBHm_Chr4g0436831 RchiOBHm_Chr7g0184061
rosa_laevigata	RLG00000005004 RLG00000006493
rosa_multiflora	Rmu_sc0001837.1_g000015 Rmu_sc0004712.1_g000010 Rmu_sc0025350.1_g000014
rosa_roxburghii	Rroxscaffold_2G00110680 Rroxscaffold_3G00269920 Rroxscaffold_5G00377880
rosa_rugosa	Rorug04G0296500 Rorug04G0296500 Rorug06G0461800 Rorug06G0461900 Rorug06G0462000 Rorug06G0462100 Rorug06G0462200 Rorug06G0462300 Rorug06G0462400 Rorug06G0462400
rosa_samantha	Rh2AG465300 Rh2CG361300 Rh2CG451700 Rh4BG359900 Rh4CG374200 Rh4DG353900 Rh6CG248500 Rh6DG208700 Rh7BG063800 Rh7CG064500 Rh7DG064000
rosa_wichuraiana	Rw4G030710 Rw7G005240

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	122
AcuI	CTGAAG	1 cut(s)	228
AluBI	AGCT	2 cut(s)	110, 160
AluI	AGCT	2 cut(s)	110, 160
ApeKI	GCWGC	1 cut(s)	107
AseI	ATTAAT	2 cut(s)	128, 185
AsuII	TTCGAA	1 cut(s)	97
BbvI	GCAGC	1 cut(s)	119
BceAI	ACGGC	1 cut(s)	120
BisI	GCNGC	2 cut(s)	108, 123
BlpI	GCTNAGC	1 cut(s)	118
BlsI	GCNGC	2 cut(s)	109, 124
BmsI	GCATC	1 cut(s)	138
Bpu1102I	GCTNAGC	1 cut(s)	118
Bpu14I	TTCGAA	1 cut(s)	97
BpuEI	CTTGAG	1 cut(s)	50
BseGI	GGATG	1 cut(s)	76
BseMII	CTCAG	1 cut(s)	135
BseRI	GAGGAG	3 cut(s)	47, 50, 182
BseXI	GCAGC	1 cut(s)	119
Bsp119I	TTCGAA	1 cut(s)	97
Bsp1720I	GCTNAGC	1 cut(s)	118
BspACI	CCGC	1 cut(s)	122
BspCNI	CTCAG	1 cut(s)	136
BspT104I	TTCGAA	1 cut(s)	97
BstBI	TTCGAA	1 cut(s)	97
BstC8I	GCNNGC	1 cut(s)	153
BstDEI	CTNAG	2 cut(s)	118, 144
BstF5I	GGATG	1 cut(s)	76
BstMWI	GCNNNNNNNGC	1 cut(s)	157
BstV1I	GCAGC	1 cut(s)	119
BstXI	CCANNNNNNTGG	1 cut(s)	236
BtsCI	GGATG	1 cut(s)	76
BtsIMutI	CAGTG	1 cut(s)	12
Cac8I	GCNNGC	1 cut(s)	153
CviJI	RGCY	3 cut(s)	110, 160, 228
CviKI_1	RGCY	3 cut(s)	110, 160, 228
DdeI	CTNAG	2 cut(s)	118, 144
Eco57I	CTGAAG	1 cut(s)	228
FaiI	YATR	3 cut(s)	66, 68, 165
Fnu4HI	GCNGC	2 cut(s)	108, 123
FokI	GGATG	1 cut(s)	83
Fsp4HI	GCNGC	2 cut(s)	108, 123
GluI	GCNGC	2 cut(s)	108, 123
Hpy188III	TCNNGA	2 cut(s)	138, 190
HpyCH4V	TGCA	1 cut(s)	56
HpyF10VI	GCNNNNNNNGC	1 cut(s)	157
HpyF3I	CTNAG	2 cut(s)	118, 144
LpnPI	CCDG	1 cut(s)	156
Lsp1109I	GCAGC	1 cut(s)	119
LweI	GCATC	1 cut(s)	138
MboII	GAAGA	5 cut(s)	17, 53, 89, 111, 221
MfeI	CAATTG	1 cut(s)	85
MluCI	AATT	3 cut(s)	85, 129, 182
MnlI	CCTC	5 cut(s)	25, 28, 31, 160, 163
MseI	TTAA	2 cut(s)	128, 185
MunI	CAATTG	1 cut(s)	85
MwoI	GCNNNNNNNGC	1 cut(s)	157
NspV	TTCGAA	1 cut(s)	97
PkrI	GCNGC	2 cut(s)	109, 124
PshBI	ATTAAT	2 cut(s)	128, 185
SaqAI	TTAA	2 cut(s)	128, 185
SatI	GCNGC	2 cut(s)	108, 123
SetI	ASST	4 cut(s)	112, 145, 162, 174
SfaNI	GCATC	1 cut(s)	138
SfuI	TTCGAA	1 cut(s)	97
SgeI	CNNG	7 cut(s)	41, 150, 155, 164, 169, 202, 232
SmlI	CTYRAG	1 cut(s)	29
SmoI	CTYRAG	1 cut(s)	29
Sse9I	AATT	3 cut(s)	85, 129, 182
SsiI	CCGC	1 cut(s)	122
TaqI	TCGA	2 cut(s)	97, 139
TasI	AATT	3 cut(s)	85, 129, 182
TauI	GCSGC	1 cut(s)	125
Tru1I	TTAA	2 cut(s)	128, 185
Tru9I	TTAA	2 cut(s)	128, 185
TscAI	CASTG	1 cut(s)	19
TseI	GCWGC	1 cut(s)	107
TspDTI	ATGAA	3 cut(s)	36, 75, 90
TspRI	CASTG	1 cut(s)	19
VspI	ATTAAT	2 cut(s)	128, 185

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.