Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr13

Orthogroup ID

OG0000816

Physical Location & Seq

Genomic Coordinates Reverse (-)

3161868 .. 3164916

Gene Structure 3049 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom13g04760.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1140 bp

ATGGGTTTGACGGAATACTTGAGGACAATTGATTGGGAGGAAGAAGCCTACCCAGCGTATGAAGATTTCGTAATTCTTCCTCTGTTCGTCCTCTACTTCCCAACTGTCCGATTTTTTCTGGATAGATTCGTCTTTGAGAAATTGGGGAGGCGGTTAATTTTTGGAAAGGGCCTTCAGAAACAGGATGTAAAAACTTATGAACAAAGGAAGAAGATTAGAAAATTCAAGGAGTCAGCATGGAAATGCATATATTTTCTTTCAGCAGAGTTTCTAGCCCTTCTTGTAACTTATGATGAGCCTTGGTTTACGAATACAAAATACTTTTGGGTAGGACCGGGAGACCAGGTCTGGCCTGACCAGAAAATGAAGTTGAAATTGAAGGGGGTTTATATGTATTGTGCTGGATTTTACACATACTCCATATTTGCTTTGATTTTCTGGGAAACAAGGCGTTCCGACTTTGGGGTATCCATGAGCCATCACGTAGCGTCTGTCATTCTCATTGTGCTGTCTTACATTTTCAGGTTTGCCCGTGTGGGTTCAATTGTTTTAGCTCTTCATGATGCTAATGATGTGTTTCTGGAGGTAGGGAAGATGTCCAAATACAGTGGTGCTGAAAGGACTGCTAGCGTTGCGTTTATTCTTTTTGTATTGTCTTGGATCATACTGCGACTCGTTTACTATCCATTCTGGATCCTTTGGAGTACAAGCTATGAAGTTCTCCTGACATTGGACATGGACAAACACTCTATAGATGGACCAATATATTACTATGTGTTCAATACTCTCCTATACAGCTTGCTTGTAATTCACATATTCTGGTGGGTCTTGATGTATCGGATGCTTGTTAAACAAATCCAAGCAAGAGGCCAGCTTAGTGACGATGTTCGGTCAGATTCTGAAGGCGAAGAAGATCGATCACGAAGATTAACTGAGAAACATAATATACAGCCACACCGTGACGCTCAGGCAAAGACAAGGAACATCTTACGTTTGCAACACTCGATGTACTCCTTCGATGGTGAAACGATTTTGGTGGAAGAAGCGCGTCGTGATTGCAGGGATGATAAGTTAACCGAGATACAGTACGGAAGCAGGTTGAATGAACAAAGTGGCAAGGGTGCAGAAGTTTGGTTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000038 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005794 GO:0005886 GO:0006082 GO:0006629 GO:0006631 GO:0006633 GO:0006643 GO:0006665 GO:0006672 GO:0006807 GO:0008150 GO:0008152 GO:0008610 GO:0009058 GO:0009987 GO:0012505 GO:0016020 GO:0016053 GO:0016410 GO:0016740 GO:0016746 GO:0016747 GO:0019752 GO:0030148 GO:0032787 GO:0034641 GO:0042761 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044271 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046394 GO:0046467 GO:0046513 GO:0050291 GO:0071704 GO:0071944 GO:0072330 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00600 ko01100 ko04071 map00600 map01100 map04071

Pfam Domains

Protein Families

TRAM_LAG1_CLN8

Protein Analysis

380

Amino Acids

45.04

Weight (kDa)

8.19

Isoelectric Point (pI)

47.23

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TRAM_LAG1_CLN8	PF03798	74 - 280	3.5e-46	TLC domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000816)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G13580 AT1G13580 AT1G13580 AT3G25540 AT3G25540 AT3G25540
fragaria_vesca	FvH4_4g28710 FvH4_4g28710 FvH4_4g28710 FvH4_4g28710 FvH4_4g28710 FvH4_4g28710 FvH4_5g13070 FvH4_5g13070 FvH4_5g13070 FvH4_5g13070 FvH4_5g13070 FvH4_5g13070 FvH4_5g13070 FvH4_5g13070 FvH4_5g13070 FvH4_5g13070 FvH4_5g13070 FvH4_5g13070 FvH4_5g13070
malus_domestica	MD06G1207300.v1.1 MD13G1053200.v1.1 MD14G1217800.v1.1 MD16G1052200.v1.1
prunus_persica	Prupe.1G298900_v2.0.a1 Prupe.5G211700_v2.0.a1
pyrus_communis	pycom06g18520 pycom13g04760 pycom14g18060 pycom16g04580
rosa_chinensis	RchiOBHm_Chr4g0436831 RchiOBHm_Chr7g0184061
rosa_laevigata	RLG00000005004 RLG00000006493
rosa_multiflora	Rmu_sc0001837.1_g000015 Rmu_sc0004712.1_g000010 Rmu_sc0025350.1_g000014
rosa_roxburghii	Rroxscaffold_2G00110680 Rroxscaffold_3G00269920 Rroxscaffold_5G00377880
rosa_rugosa	Rorug04G0296500 Rorug04G0296500 Rorug06G0461800 Rorug06G0461900 Rorug06G0462000 Rorug06G0462100 Rorug06G0462200 Rorug06G0462300 Rorug06G0462400 Rorug06G0462400
rosa_samantha	Rh2AG465300 Rh2CG361300 Rh2CG451700 Rh4BG359900 Rh4CG374200 Rh4DG353900 Rh6CG248500 Rh6DG208700 Rh7BG063800 Rh7CG064500 Rh7DG064000
rosa_wichuraiana	Rw4G030710 Rw7G005240

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	1086
AccII	CGCG	1 cut(s)	1048
AciI	CCGC	1 cut(s)	151
AclWI	GGATC	3 cut(s)	668, 688, 701
AcsI	RAATTY	1 cut(s)	221
AcuI	CTGAAG	2 cut(s)	158, 921
AdeI	CACNNNGTG	1 cut(s)	959
AfaI	GTAC	3 cut(s)	706, 1010, 1088
AfiI	CCNNNNNNNGG	2 cut(s)	462, 730
AgsI	TTSAA	6 cut(s)	226, 373, 379, 543, 781, 1102
AjnI	CCWGG	1 cut(s)	342
AluBI	AGCT	4 cut(s)	554, 711, 798, 874
AluI	AGCT	4 cut(s)	554, 711, 798, 874
Alw26I	GTCTC	1 cut(s)	333
AlwI	GGATC	3 cut(s)	668, 688, 701
AlwNI	CAGNNNCTG	1 cut(s)	899
AoxI	GGCC	3 cut(s)	169, 350, 868
ApoI	RAATTY	1 cut(s)	221
AspLEI	GCGC	1 cut(s)	1048
AspS9I	GGNCC	3 cut(s)	169, 332, 758
AsuC2I	CCSGG	1 cut(s)	336
AsuHPI	GGTGA	1 cut(s)	1034
AsuNHI	GCTAGC	1 cut(s)	626
AvaII	GGWCC	2 cut(s)	332, 758
BamHI	GGATCC	1 cut(s)	693
BccI	CCATC	3 cut(s)	486, 749, 1013
BciT130I	CCWGG	1 cut(s)	344
BciVI	GTATCC	1 cut(s)	478
BcnI	CCSGG	1 cut(s)	336
BcoDI	GTCTC	1 cut(s)	333
BfaI	CTAG	2 cut(s)	272, 627
BfmI	CTRYAG	1 cut(s)	750
BfuAI	ACCTGC	1 cut(s)	1086
BfuI	GTATCC	1 cut(s)	478
Bme1390I	CCNGG	2 cut(s)	336, 344
Bme18I	GGWCC	2 cut(s)	332, 758
BmgT120I	GGNCC	3 cut(s)	169, 332, 758
BmiI	GGNNCC	1 cut(s)	695
BmrFI	CCNGG	2 cut(s)	336, 344
BmsI	GCATC	2 cut(s)	553, 831
BmtI	GCTAGC	1 cut(s)	630
BpmI	CTGGAG	1 cut(s)	602
Bpu10I	CCTNAGC	1 cut(s)	966
BpuEI	CTTGAG	1 cut(s)	40
BpuMI	CCSGG	1 cut(s)	336
Bsa29I	ATCGAT	1 cut(s)	916
BsaAI	YACGTR	1 cut(s)	484
BsaI	GGTCTC	1 cut(s)	333
BsaJI	CCNNGG	1 cut(s)	299
BsaXI	ACNNNNNCTCC	4 cut(s)	330, 360, 401, 431
Bsc4I	CCNNNNNNNGG	2 cut(s)	462, 730
BseBI	CCWGG	1 cut(s)	344
BseCI	ATCGAT	1 cut(s)	916
BseDI	CCNNGG	1 cut(s)	299
BseGI	GGATG	3 cut(s)	190, 846, 1069
BseLI	CCNNNNNNNGG	2 cut(s)	462, 730
BseMII	CTCAG	2 cut(s)	924, 980
BseYI	CCCAGC	1 cut(s)	52
Bsh1236I	CGCG	1 cut(s)	1048
BshFI	GGCC	3 cut(s)	171, 352, 870
BshVI	ATCGAT	1 cut(s)	916
BsiSI	CCGG	1 cut(s)	335
BslI	CCNNNNNNNGG	2 cut(s)	462, 730
BsmAI	GTCTC	1 cut(s)	333
BsnI	GGCC	3 cut(s)	171, 352, 870
Bso31I	GGTCTC	1 cut(s)	333
Bsp143I	GATC	4 cut(s)	660, 693, 913, 917
BspACI	CCGC	1 cut(s)	151
BspANI	GGCC	3 cut(s)	171, 352, 870
BspCNI	CTCAG	2 cut(s)	925, 979
BspDI	ATCGAT	1 cut(s)	916
BspFNI	CGCG	1 cut(s)	1048
BspHI	TCATGA	1 cut(s)	559
BspLI	GGNNCC	1 cut(s)	695
BspMI	ACCTGC	1 cut(s)	1086
BspOI	GCTAGC	1 cut(s)	630
BspPI	GGATC	3 cut(s)	668, 688, 701
BspQI	GCTCTTC	1 cut(s)	561
BspTNI	GGTCTC	1 cut(s)	333
BssECI	CCNNGG	1 cut(s)	299
BssMI	GATC	4 cut(s)	660, 693, 913, 917
BssT1I	CCWWGG	1 cut(s)	299
Bst2UI	CCWGG	1 cut(s)	344
Bst4CI	ACNGT	4 cut(s)	106, 608, 959, 1086
Bst6I	CTCTTC	1 cut(s)	561
BstBAI	YACGTR	1 cut(s)	484
BstC8I	GCNNGC	3 cut(s)	628, 800, 872
BstDEI	CTNAG	3 cut(s)	875, 933, 966
BstF5I	GGATG	3 cut(s)	190, 846, 1069
BstFNI	CGCG	1 cut(s)	1048
BstHHI	GCGC	1 cut(s)	1048
BstKTI	GATC	4 cut(s)	663, 696, 916, 920
BstMAI	GTCTC	1 cut(s)	333
BstMBI	GATC	4 cut(s)	660, 693, 913, 917
BstMWI	GCNNNNNNNGC	2 cut(s)	53, 632
BstNI	CCWGG	1 cut(s)	344
BstSCI	CCNGG	2 cut(s)	334, 342
BstSFI	CTRYAG	1 cut(s)	750
BstUI	CGCG	1 cut(s)	1048
BstX2I	RGATCY	1 cut(s)	693
BstYI	RGATCY	1 cut(s)	693
Bsu15I	ATCGAT	1 cut(s)	916
BsuI	GTATCC	1 cut(s)	478
BsuRI	GGCC	3 cut(s)	171, 352, 870
BsuTUI	ATCGAT	1 cut(s)	916
BtsCI	GGATG	3 cut(s)	190, 846, 1069
BtsIMutI	CAGTG	1 cut(s)	613
BveI	ACCTGC	1 cut(s)	1086
Cac8I	GCNNGC	3 cut(s)	628, 800, 872
CaiI	CAGNNNCTG	1 cut(s)	899
CciI	TCATGA	1 cut(s)	559
CfoI	GCGC	1 cut(s)	1048
Cfr13I	GGNCC	3 cut(s)	169, 332, 758
ClaI	ATCGAT	1 cut(s)	916
CseI	GACGC	3 cut(s)	477, 971, 1037
CsiI	ACCWGGT	1 cut(s)	342
Csp6I	GTAC	3 cut(s)	705, 1009, 1087
CspCI	CAANNNNNGTGG	2 cut(s)	589, 624
CviAII	CATG	4 cut(s)	237, 472, 560, 736
CviQI	GTAC	3 cut(s)	705, 1009, 1087
DdeI	CTNAG	3 cut(s)	875, 933, 966
DpnI	GATC	4 cut(s)	662, 695, 915, 919
DpnII	GATC	4 cut(s)	660, 693, 913, 917
DraIII	CACNNNGTG	1 cut(s)	959
Eam1104I	CTCTTC	1 cut(s)	561
EarI	CTCTTC	1 cut(s)	561
Eco130I	CCWWGG	1 cut(s)	299
Eco31I	GGTCTC	1 cut(s)	333
Eco47I	GGWCC	2 cut(s)	332, 758
Eco57I	CTGAAG	2 cut(s)	158, 921
EcoO109I	RGGNCCY	1 cut(s)	169
EcoRII	CCWGG	1 cut(s)	342
EcoT14I	CCWWGG	1 cut(s)	299
EcoT22I	ATGCAT	1 cut(s)	248
ErhI	CCWWGG	1 cut(s)	299
FaeI	CATG	4 cut(s)	240, 475, 563, 739
FatI	CATG	4 cut(s)	236, 471, 559, 735
FokI	GGATG	3 cut(s)	197, 853, 1076
FspBI	CTAG	2 cut(s)	272, 627
GlaI	GCGC	1 cut(s)	1047
GsaI	CCCAGC	1 cut(s)	56
GsuI	CTGGAG	1 cut(s)	602
HaeIII	GGCC	3 cut(s)	171, 352, 870
HapII	CCGG	1 cut(s)	335
HgaI	GACGC	3 cut(s)	477, 971, 1037
HhaI	GCGC	1 cut(s)	1048
Hin1II	CATG	4 cut(s)	240, 475, 563, 739
Hin6I	GCGC	1 cut(s)	1046
HinP1I	GCGC	1 cut(s)	1046
HincII	GTYRAC	1 cut(s)	1074
HindII	GTYRAC	1 cut(s)	1074
HinfI	GANTC	4 cut(s)	126, 230, 672, 896
HpaI	GTTAAC	1 cut(s)	1074
HpaII	CCGG	1 cut(s)	335
HphI	GGTGA	1 cut(s)	1034
Hpy166II	GTNNAC	3 cut(s)	306, 679, 1074
Hpy188I	TCNGA	7 cut(s)	110, 177, 457, 840, 895, 901, 1139
Hpy188III	TCNNGA	8 cut(s)	119, 560, 581, 691, 724, 829, 921, 1052
Hpy8I	GTNNAC	3 cut(s)	306, 679, 1074
Hpy99I	CGWCG	1 cut(s)	1053
HpyAV	CCTTC	5 cut(s)	182, 287, 373, 896, 1024
HpyCH4III	ACNGT	4 cut(s)	106, 608, 959, 1086
HpyCH4IV	ACGT	2 cut(s)	483, 991
HpyCH4V	TGCA	4 cut(s)	246, 997, 1059, 1124
HpyF10VI	GCNNNNNNNGC	2 cut(s)	53, 632
HpyF3I	CTNAG	3 cut(s)	875, 933, 966
HpySE526I	ACGT	2 cut(s)	483, 991
Hsp92II	CATG	4 cut(s)	240, 475, 563, 739
HspAI	GCGC	1 cut(s)	1046
KspAI	GTTAAC	1 cut(s)	1074
Kzo9I	GATC	4 cut(s)	660, 693, 913, 917
LguI	GCTCTTC	1 cut(s)	561
LweI	GCATC	2 cut(s)	553, 831
MabI	ACCWGGT	1 cut(s)	342
MaeI	CTAG	2 cut(s)	272, 627
MaeII	ACGT	2 cut(s)	483, 991
MaeIII	GTNAC	3 cut(s)	283, 878, 959
MalI	GATC	4 cut(s)	662, 695, 915, 919
MboI	GATC	4 cut(s)	660, 693, 913, 917
MfeI	CAATTG	2 cut(s)	27, 543
MflI	RGATCY	1 cut(s)	693
MluCI	AATT	8 cut(s)	27, 72, 140, 156, 221, 374, 543, 807
MlyI	GAGTC	2 cut(s)	239, 666
MmeI	TCCRAC	1 cut(s)	480
MnlI	CCTC	7 cut(s)	15, 31, 90, 101, 141, 577, 860
Mph1103I	ATGCAT	1 cut(s)	248
MseI	TTAA	4 cut(s)	155, 849, 929, 1073
MslI	CAYNNNNRTG	1 cut(s)	241
MspI	CCGG	1 cut(s)	335
MspR9I	CCNGG	2 cut(s)	336, 344
MunI	CAATTG	2 cut(s)	27, 543
MvaI	CCWGG	1 cut(s)	344
MvnI	CGCG	1 cut(s)	1048
MwoI	GCNNNNNNNGC	2 cut(s)	53, 632
NciI	CCSGG	1 cut(s)	336
NdeII	GATC	4 cut(s)	660, 693, 913, 917
NheI	GCTAGC	1 cut(s)	626
NlaIII	CATG	4 cut(s)	240, 475, 563, 739
NlaIV	GGNNCC	1 cut(s)	695
NmuCI	GTSAC	2 cut(s)	878, 959
NsiI	ATGCAT	1 cut(s)	248
PagI	TCATGA	1 cut(s)	559
PciSI	GCTCTTC	1 cut(s)	561
PfeI	GAWTC	2 cut(s)	126, 896
PflFI	GACNNNGTC	1 cut(s)	344
PleI	GAGTC	2 cut(s)	238, 666
PpsI	GAGTC	2 cut(s)	238, 666
Ppu21I	YACGTR	1 cut(s)	484
Psp6I	CCWGG	1 cut(s)	342
PspFI	CCCAGC	1 cut(s)	52
PspGI	CCWGG	1 cut(s)	342
PspN4I	GGNNCC	1 cut(s)	695
PspPI	GGNCC	3 cut(s)	169, 332, 758
PstNI	CAGNNNCTG	1 cut(s)	899
PsuI	RGATCY	1 cut(s)	693
PsyI	GACNNNGTC	1 cut(s)	344
RsaI	GTAC	3 cut(s)	706, 1010, 1088
RsaNI	GTAC	3 cut(s)	705, 1009, 1087
RseI	CAYNNNNRTG	1 cut(s)	241
SapI	GCTCTTC	1 cut(s)	561
SaqAI	TTAA	4 cut(s)	155, 849, 929, 1073
Sau3AI	GATC	4 cut(s)	660, 693, 913, 917
Sau96I	GGNCC	3 cut(s)	169, 332, 758
SchI	GAGTC	2 cut(s)	239, 666
ScrFI	CCNGG	2 cut(s)	336, 344
SexAI	ACCWGGT	1 cut(s)	342
SfaNI	GCATC	2 cut(s)	553, 831
SfcI	CTRYAG	1 cut(s)	750
SinI	GGWCC	2 cut(s)	332, 758
SmiMI	CAYNNNNRTG	1 cut(s)	241
SmlI	CTYRAG	1 cut(s)	19
SmoI	CTYRAG	1 cut(s)	19
Sse9I	AATT	8 cut(s)	27, 72, 140, 156, 221, 374, 543, 807
SsiI	CCGC	1 cut(s)	151
SspMI	CTAG	2 cut(s)	272, 627
StyD4I	CCNGG	2 cut(s)	334, 342
StyI	CCWWGG	1 cut(s)	299
TaaI	ACNGT	4 cut(s)	106, 608, 959, 1086
TaiI	ACGT	2 cut(s)	486, 994
TaqI	TCGA	3 cut(s)	916, 1004, 1017
TaqII	GACCGA	1 cut(s)	879
TasI	AATT	8 cut(s)	27, 72, 140, 156, 221, 374, 543, 807
TatI	WGTACW	2 cut(s)	704, 1008
TfiI	GAWTC	2 cut(s)	126, 896
Tru1I	TTAA	4 cut(s)	155, 849, 929, 1073
Tru9I	TTAA	4 cut(s)	155, 849, 929, 1073
TscAI	CASTG	1 cut(s)	613
TseFI	GTSAC	2 cut(s)	878, 959
Tsp45I	GTSAC	2 cut(s)	878, 959
TspDTI	ATGAA	6 cut(s)	75, 213, 380, 548, 729, 1119
TspGWI	ACGGA	2 cut(s)	26, 1104
TspRI	CASTG	1 cut(s)	613
Tth111I	GACNNNGTC	1 cut(s)	344
VpaK11BI	GGWCC	2 cut(s)	332, 758
XapI	RAATTY	1 cut(s)	221
XspI	CTAG	2 cut(s)	272, 627
Zsp2I	ATGCAT	1 cut(s)	248

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.