Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr6

Orthogroup ID

OG0000816

Physical Location & Seq

Genomic Coordinates Forward (+)

22253611 .. 22255816

Gene Structure 2206 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom06g18520.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 948 bp

ATGGAGGAAATAATGGGTCTGCCTGGAATCAGTGATTTGGTCAAACTCAACTGGGAGGAGGAGTCGTACCCAGTGCCCAATGACTTCTTTGTCCTCCCCTTGTTCGTTCTTCTCTTCCCGTCACTCAGGCTTTTCCTGGACATTTTCGTCTTTGAGAGATTAGCAAAGCGCCTTTTGTTTGGAAAGAAGTATGCATCGCTGAATGTTGAGACCCGTGATAATCGGAAGAAAGTTAATAAATTCAAAGAGTCGGCATTCAAATGTGTTTATTTTTTCACTGCGGAGCTTTTGGCTCTATATGTTACGTACGATGAGCCTTGGTTCTCTAAAACCAGATATTTCTGGGTAGGGCCTGGCAATCAGATTTGGCCCGACCAGAAAACCAAATTAAAATTGAAGGGGCTTTACATGTATTCCGCTGGATTCTACATCTACTCCGCCTTTGCTTTGGTGTTTTGGGAAACACGGCGTTCTGACTTTGTAGTGTCAATGTCTCATCATTTAGCAACTACGATTTTAATTGTGGCGTCTTACATATTCAAGTTTTCTCGAGTAGGCTCGGTCATTTTAGCTCTCCATGAAGGATCTGATGTGTTTTTAGAAATTGCAAAGTTGTCAAAATATTGTGGCTTTGAAATGCTTGCCGGCATTGCTTTTGTTAGTTTTGTTCTCTCTTGGACAGTACTACGTCTTATTTACTTTCCATTCTGGATAATATGGAGTACCAGCTATGAAGCTCTTCTGACCTTGGACAAGGAGAAGCACATAGTGGATGGATCGATCTACAATTACTTGTTTAATACTCTTCTAATTGGCTTGCTCTTTTGTCATATTTATTGGTGGAAGCTGATGGTTCGGATGCTCGTGAAGCAAATTCAGGCTAGAGGGAAAGTTGATGACGATGTTCGATCTGATTCTGAAGGCGAGGATGATGAACACGAGGACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000038 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0006082 GO:0006629 GO:0006631 GO:0006633 GO:0006643 GO:0006665 GO:0006672 GO:0006807 GO:0008150 GO:0008152 GO:0008610 GO:0009058 GO:0009987 GO:0012505 GO:0016053 GO:0016410 GO:0016740 GO:0016746 GO:0016747 GO:0019752 GO:0030148 GO:0032787 GO:0034641 GO:0042761 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044271 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046394 GO:0046467 GO:0046513 GO:0050291 GO:0071704 GO:0072330 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00600 ko01100 ko04071 map00600 map01100 map04071

Pfam Domains

Protein Families

TRAM_LAG1_CLN8

Protein Analysis

316

Amino Acids

36.99

Weight (kDa)

6.34

Isoelectric Point (pI)

31.31

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000816)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G13580 AT1G13580 AT1G13580 AT3G25540 AT3G25540 AT3G25540
fragaria_vesca	FvH4_4g28710 FvH4_4g28710 FvH4_4g28710 FvH4_4g28710 FvH4_4g28710 FvH4_4g28710 FvH4_5g13070 FvH4_5g13070 FvH4_5g13070 FvH4_5g13070 FvH4_5g13070 FvH4_5g13070 FvH4_5g13070 FvH4_5g13070 FvH4_5g13070 FvH4_5g13070 FvH4_5g13070 FvH4_5g13070 FvH4_5g13070
malus_domestica	MD06G1207300.v1.1 MD13G1053200.v1.1 MD14G1217800.v1.1 MD16G1052200.v1.1
prunus_persica	Prupe.1G298900_v2.0.a1 Prupe.5G211700_v2.0.a1
pyrus_communis	pycom06g18520 pycom13g04760 pycom14g18060 pycom16g04580
rosa_chinensis	RchiOBHm_Chr4g0436831 RchiOBHm_Chr7g0184061
rosa_laevigata	RLG00000005004 RLG00000006493
rosa_multiflora	Rmu_sc0001837.1_g000015 Rmu_sc0004712.1_g000010 Rmu_sc0025350.1_g000014
rosa_roxburghii	Rroxscaffold_2G00110680 Rroxscaffold_3G00269920 Rroxscaffold_5G00377880
rosa_rugosa	Rorug04G0296500 Rorug04G0296500 Rorug06G0461800 Rorug06G0461900 Rorug06G0462000 Rorug06G0462100 Rorug06G0462200 Rorug06G0462300 Rorug06G0462400 Rorug06G0462400
rosa_samantha	Rh2AG465300 Rh2CG361300 Rh2CG451700 Rh4BG359900 Rh4CG374200 Rh4DG353900 Rh6CG248500 Rh6DG208700 Rh7BG063800 Rh7CG064500 Rh7DG064000
rosa_wichuraiana	Rw4G030710 Rw7G005240

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	2 cut(s)	89, 146
AciI	CCGC	3 cut(s)	281, 417, 438
AclWI	GGATC	2 cut(s)	592, 784
AcsI	RAATTY	2 cut(s)	239, 873
AcuI	CTGAAG	1 cut(s)	939
AcyI	GRCGYC	1 cut(s)	527
AdeI	CACNNNGTG	1 cut(s)	769
AfaI	GTAC	4 cut(s)	68, 308, 684, 724
AflIII	ACRYGT	1 cut(s)	408
AgsI	TTSAA	5 cut(s)	244, 259, 397, 541, 635
AjnI	CCWGG	3 cut(s)	22, 135, 352
AluBI	AGCT	5 cut(s)	286, 572, 729, 737, 847
AluI	AGCT	5 cut(s)	286, 572, 729, 737, 847
Alw26I	GTCTC	2 cut(s)	203, 498
AlwI	GGATC	2 cut(s)	592, 784
Ama87I	CYCGRG	1 cut(s)	549
AoxI	GGCC	2 cut(s)	350, 368
ApoI	RAATTY	2 cut(s)	239, 873
Asp700I	GAANNNNTTC	1 cut(s)	738
AspLEI	GCGC	1 cut(s)	171
AspS9I	GGNCC	2 cut(s)	350, 369
AvaI	CYCGRG	1 cut(s)	549
BaeGI	GKGCMC	1 cut(s)	78
BarI	GAAGNNNNNNTAC	2 cut(s)	389, 421
BauI	CACGAG	2 cut(s)	863, 938
BccI	CCATC	2 cut(s)	767, 844
BceAI	ACGGC	1 cut(s)	482
BciT130I	CCWGG	3 cut(s)	24, 137, 354
BcoDI	GTCTC	2 cut(s)	203, 498
BfaI	CTAG	1 cut(s)	882
BfoI	RGCGCY	1 cut(s)	172
BmcAI	AGTACT	1 cut(s)	684
Bme1390I	CCNGG	3 cut(s)	24, 137, 354
BmeT110I	CYCGRG	1 cut(s)	549
BmgT120I	GGNCC	2 cut(s)	350, 369
BmrFI	CCNGG	3 cut(s)	24, 137, 354
BmrI	ACTGGG	2 cut(s)	61, 65
BmsI	GCATC	2 cut(s)	203, 849
BmuI	ACTGGG	2 cut(s)	61, 65
Bsa29I	ATCGAT	1 cut(s)	779
BsaAI	YACGTR	1 cut(s)	306
BsaHI	GRCGYC	1 cut(s)	527
BsaI	GGTCTC	1 cut(s)	203
BsaJI	CCNNGG	2 cut(s)	317, 747
BsaXI	ACNNNNNCTCC	6 cut(s)	47, 50, 77, 80, 419, 449
Bse118I	RCCGGY	1 cut(s)	644
Bse1I	ACTGG	2 cut(s)	56, 71
Bse3DI	GCAATG	1 cut(s)	648
BseBI	CCWGG	3 cut(s)	24, 137, 354
BseCI	ATCGAT	1 cut(s)	779
BseDI	CCNNGG	2 cut(s)	317, 747
BseGI	GGATG	3 cut(s)	778, 864, 934
BseMI	GCAATG	1 cut(s)	648
BseMII	CTCAG	1 cut(s)	139
BseNI	ACTGG	2 cut(s)	56, 71
BseRI	GAGGAG	2 cut(s)	71, 74
BseSI	GKGCMC	1 cut(s)	78
BshFI	GGCC	2 cut(s)	352, 370
BshVI	ATCGAT	1 cut(s)	779
BsiHKCI	CYCGRG	1 cut(s)	549
BsiSI	CCGG	1 cut(s)	645
BsiWI	CGTACG	1 cut(s)	306
BsmAI	GTCTC	2 cut(s)	203, 498
BsmI	GAATGC	1 cut(s)	254
BsnI	GGCC	2 cut(s)	352, 370
Bso31I	GGTCTC	1 cut(s)	203
BsoBI	CYCGRG	1 cut(s)	549
Bsp1286I	GDGCHC	1 cut(s)	78
Bsp143I	GATC	4 cut(s)	584, 776, 780, 908
BspACI	CCGC	3 cut(s)	281, 417, 438
BspANI	GGCC	2 cut(s)	352, 370
BspCNI	CTCAG	1 cut(s)	138
BspDI	ATCGAT	1 cut(s)	779
BspPI	GGATC	2 cut(s)	592, 784
BspQI	GCTCTTC	1 cut(s)	744
BspTNI	GGTCTC	1 cut(s)	203
BsrDI	GCAATG	1 cut(s)	648
BsrFI	RCCGGY	1 cut(s)	644
BsrI	ACTGG	2 cut(s)	56, 71
BssAI	RCCGGY	1 cut(s)	644
BssECI	CCNNGG	2 cut(s)	317, 747
BssMI	GATC	4 cut(s)	584, 776, 780, 908
BssNI	GRCGYC	1 cut(s)	527
BssSI	CACGAG	2 cut(s)	863, 938
BssT1I	CCWWGG	2 cut(s)	317, 747
Bst2BI	CACGAG	2 cut(s)	863, 938
Bst2UI	CCWGG	3 cut(s)	24, 137, 354
Bst4CI	ACNGT	1 cut(s)	682
Bst6I	CTCTTC	3 cut(s)	119, 744, 810
BstACI	GRCGYC	1 cut(s)	527
BstBAI	YACGTR	1 cut(s)	306
BstC8I	GCNNGC	3 cut(s)	642, 646, 818
BstDEI	CTNAG	1 cut(s)	125
BstF5I	GGATG	3 cut(s)	778, 864, 934
BstH2I	RGCGCY	1 cut(s)	172
BstHHI	GCGC	1 cut(s)	171
BstKTI	GATC	4 cut(s)	587, 779, 783, 911
BstMAI	GTCTC	2 cut(s)	203, 498
BstMBI	GATC	4 cut(s)	584, 776, 780, 908
BstMWI	GCNNNNNNNGC	2 cut(s)	650, 868
BstNI	CCWGG	3 cut(s)	24, 137, 354
BstNSI	RCATGY	1 cut(s)	412
BstSCI	CCNGG	3 cut(s)	22, 135, 352
BstSLI	GKGCMC	1 cut(s)	78
BstSNI	TACGTA	1 cut(s)	306
BstX2I	RGATCY	1 cut(s)	584
BstYI	RGATCY	1 cut(s)	584
Bsu15I	ATCGAT	1 cut(s)	779
BsuRI	GGCC	2 cut(s)	352, 370
BsuTUI	ATCGAT	1 cut(s)	779
BtgZI	GCGATG	1 cut(s)	180
BtsCI	GGATG	3 cut(s)	778, 864, 934
BtsI	GCAGTG	1 cut(s)	276
BtsIMutI	CAGTG	3 cut(s)	37, 78, 276
Cac8I	GCNNGC	3 cut(s)	642, 646, 818
CfoI	GCGC	1 cut(s)	171
Cfr10I	RCCGGY	1 cut(s)	644
Cfr13I	GGNCC	2 cut(s)	350, 369
ClaI	ATCGAT	1 cut(s)	779
CseI	GACGC	1 cut(s)	516
Csp6I	GTAC	4 cut(s)	67, 307, 683, 723
CviAII	CATG	2 cut(s)	409, 578
CviQI	GTAC	4 cut(s)	67, 307, 683, 723
DdeI	CTNAG	1 cut(s)	125
DpnI	GATC	4 cut(s)	586, 778, 782, 910
DpnII	GATC	4 cut(s)	584, 776, 780, 908
DraIII	CACNNNGTG	1 cut(s)	769
DrdI	GACNNNNNNGTC	2 cut(s)	89, 146
DseDI	GACNNNNNNGTC	2 cut(s)	89, 146
Eam1104I	CTCTTC	3 cut(s)	119, 744, 810
EarI	CTCTTC	3 cut(s)	119, 744, 810
EciI	GGCGGA	1 cut(s)	427
Eco105I	TACGTA	1 cut(s)	306
Eco130I	CCWWGG	2 cut(s)	317, 747
Eco31I	GGTCTC	1 cut(s)	203
Eco57I	CTGAAG	1 cut(s)	939
Eco88I	CYCGRG	1 cut(s)	549
EcoO109I	RGGNCCY	1 cut(s)	350
EcoRII	CCWGG	3 cut(s)	22, 135, 352
EcoT14I	CCWWGG	2 cut(s)	317, 747
EcoT22I	ATGCAT	1 cut(s)	196
ErhI	CCWWGG	2 cut(s)	317, 747
FaeI	CATG	2 cut(s)	412, 581
FatI	CATG	2 cut(s)	408, 577
FokI	GGATG	3 cut(s)	785, 871, 941
FspBI	CTAG	1 cut(s)	882
GlaI	GCGC	1 cut(s)	170
HaeII	RGCGCY	1 cut(s)	172
HaeIII	GGCC	2 cut(s)	352, 370
HapII	CCGG	1 cut(s)	645
HgaI	GACGC	1 cut(s)	516
HhaI	GCGC	1 cut(s)	171
Hin1I	GRCGYC	1 cut(s)	527
Hin1II	CATG	2 cut(s)	412, 581
Hin6I	GCGC	1 cut(s)	169
HinP1I	GCGC	1 cut(s)	169
HinfI	GANTC	5 cut(s)	27, 62, 248, 423, 914
HpaII	CCGG	1 cut(s)	645
Hpy188I	TCNGA	8 cut(s)	225, 363, 475, 589, 744, 858, 913, 919
Hpy188III	TCNNGA	3 cut(s)	549, 709, 865
HpyAV	CCTTC	3 cut(s)	391, 575, 914
HpyCH4III	ACNGT	1 cut(s)	682
HpyCH4IV	ACGT	2 cut(s)	305, 688
HpyCH4V	TGCA	2 cut(s)	194, 608
HpyF10VI	GCNNNNNNNGC	2 cut(s)	650, 868
HpyF3I	CTNAG	1 cut(s)	125
HpySE526I	ACGT	2 cut(s)	305, 688
Hsp92I	GRCGYC	1 cut(s)	527
Hsp92II	CATG	2 cut(s)	412, 581
HspAI	GCGC	1 cut(s)	169
KroI	GCCGGC	1 cut(s)	644
KroNI	GCCGGC	1 cut(s)	646
Kzo9I	GATC	4 cut(s)	584, 776, 780, 908
LguI	GCTCTTC	1 cut(s)	744
LmnI	GCTCC	1 cut(s)	283
LweI	GCATC	2 cut(s)	203, 849
MaeI	CTAG	1 cut(s)	882
MaeII	ACGT	2 cut(s)	305, 688
MaeIII	GTNAC	2 cut(s)	120, 301
MalI	GATC	4 cut(s)	586, 778, 782, 910
MboI	GATC	4 cut(s)	584, 776, 780, 908
MboII	GAAGA	5 cut(s)	101, 106, 238, 731, 797
MflI	RGATCY	1 cut(s)	584
MhlI	GDGCHC	1 cut(s)	78
MluCI	AATT	8 cut(s)	239, 386, 392, 519, 603, 787, 810, 873
MlyI	GAGTC	2 cut(s)	71, 257
MnlI	CCTC	6 cut(s)	49, 52, 104, 878, 919, 934
Mph1103I	ATGCAT	1 cut(s)	196
MroNI	GCCGGC	1 cut(s)	644
MroXI	GAANNNNTTC	1 cut(s)	738
MseI	TTAA	4 cut(s)	234, 389, 518, 798
MslI	CAYNNNNRTG	1 cut(s)	259
MspA1I	CMGCKG	1 cut(s)	419
MspI	CCGG	1 cut(s)	645
MspR9I	CCNGG	3 cut(s)	24, 137, 354
Mva1269I	GAATGC	1 cut(s)	254
MvaI	CCWGG	3 cut(s)	24, 137, 354
MwoI	GCNNNNNNNGC	2 cut(s)	650, 868
NaeI	GCCGGC	1 cut(s)	646
NdeII	GATC	4 cut(s)	584, 776, 780, 908
NgoMIV	GCCGGC	1 cut(s)	644
NlaIII	CATG	2 cut(s)	412, 581
NmuCI	GTSAC	1 cut(s)	120
NsiI	ATGCAT	1 cut(s)	196
NspI	RCATGY	1 cut(s)	412
PaeR7I	CTCGAG	1 cut(s)	549
PciI	ACATGT	1 cut(s)	408
PciSI	GCTCTTC	1 cut(s)	744
PctI	GAATGC	1 cut(s)	254
PdiI	GCCGGC	1 cut(s)	646
PdmI	GAANNNNTTC	1 cut(s)	738
PfeI	GAWTC	3 cut(s)	27, 423, 914
Pfl23II	CGTACG	1 cut(s)	306
PfoI	TCCNGGA	1 cut(s)	135
PleI	GAGTC	2 cut(s)	70, 256
PpsI	GAGTC	2 cut(s)	70, 256
Ppu21I	YACGTR	1 cut(s)	306
PscI	ACATGT	1 cut(s)	408
Psp6I	CCWGG	3 cut(s)	22, 135, 352
PspGI	CCWGG	3 cut(s)	22, 135, 352
PspLI	CGTACG	1 cut(s)	306
PspPI	GGNCC	2 cut(s)	350, 369
PsuI	RGATCY	1 cut(s)	584
RsaI	GTAC	4 cut(s)	68, 308, 684, 724
RsaNI	GTAC	4 cut(s)	67, 307, 683, 723
RseI	CAYNNNNRTG	1 cut(s)	259
SapI	GCTCTTC	1 cut(s)	744
SaqAI	TTAA	4 cut(s)	234, 389, 518, 798
Sau3AI	GATC	4 cut(s)	584, 776, 780, 908
Sau96I	GGNCC	2 cut(s)	350, 369
ScaI	AGTACT	1 cut(s)	684
SchI	GAGTC	2 cut(s)	71, 257
ScrFI	CCNGG	3 cut(s)	24, 137, 354
SduI	GDGCHC	1 cut(s)	78
SetI	ASST	8 cut(s)	288, 308, 574, 691, 731, 739, 749, 849
SfaNI	GCATC	2 cut(s)	203, 849
Sfr274I	CTCGAG	1 cut(s)	549
SlaI	CTCGAG	1 cut(s)	549
SmiMI	CAYNNNNRTG	1 cut(s)	259
SmlI	CTYRAG	1 cut(s)	549
SmoI	CTYRAG	1 cut(s)	549
SnaBI	TACGTA	1 cut(s)	306
Sse9I	AATT	8 cut(s)	239, 386, 392, 519, 603, 787, 810, 873
SsiI	CCGC	3 cut(s)	281, 417, 438
SspI	AATATT	1 cut(s)	623
SspMI	CTAG	1 cut(s)	882
StyD4I	CCNGG	3 cut(s)	22, 135, 352
StyI	CCWWGG	2 cut(s)	317, 747
TaaI	ACNGT	1 cut(s)	682
TaiI	ACGT	2 cut(s)	308, 691
TaqI	TCGA	3 cut(s)	550, 779, 907
TaqII	GACCGA	1 cut(s)	550
TasI	AATT	8 cut(s)	239, 386, 392, 519, 603, 787, 810, 873
TatI	WGTACW	1 cut(s)	682
TfiI	GAWTC	3 cut(s)	27, 423, 914
Tru1I	TTAA	4 cut(s)	234, 389, 518, 798
Tru9I	TTAA	4 cut(s)	234, 389, 518, 798
TscAI	CASTG	3 cut(s)	37, 78, 283
TseFI	GTSAC	1 cut(s)	120
Tsp45I	GTSAC	1 cut(s)	120
TspDTI	ATGAA	3 cut(s)	594, 747, 948
TspRI	CASTG	3 cut(s)	37, 78, 283
XapI	RAATTY	2 cut(s)	239, 873
XceI	RCATGY	1 cut(s)	412
XhoI	CTCGAG	1 cut(s)	549
XmnI	GAANNNNTTC	1 cut(s)	738
XspI	CTAG	1 cut(s)	882
ZrmI	AGTACT	1 cut(s)	684
Zsp2I	ATGCAT	1 cut(s)	196

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.