AT1G14520

oxygenase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0001948
Physical Location & Seq
Reverse (-)
4968134 .. 4970311
2178 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G14520.4

Sequence Viewer

Length: 936 bp
ATGACTATTCTCATAGATCGCCACTCTGATCAGAACGATGCAGGAGATGAGATTGTAGAGAAGAATCAGGGGAATGGTAAAGAGGAAGAAACAGAGTTGGTGTTAGATGCAGGTTTCGAGGCTCCTCACACCAACTCTTTTGGTCGCACCTTCAGGGATTATGATGCTGAGAGTGAAAGGAGAAGAGGTGTTGAGGAATTTTACAGAGTCAATCACATTGGCCAAACCGTTGATTTCGTGAGGAAGATGAGAGAAGAATACGAGAAGCTAAATCGTACGGAGATGAGCATTTGGGAATGTTGCGAGCTTCTGAATGAGTTTATCGACGAGAGTGATCCTGATTTGGACGAACCTCAGATCGAGCATCTGCTTCAGACAGCTGAAGCCATCAGAAAAGATTACCCTGATGAAGACTGGCTCCATCTGACCGGTCTTATCCACGATCTTGGAAAAGTTCTTCTTCACTCTTCATTTGGTGAGCTCCCTCAGTGGGCTGTCGTCGGTGATACATTTCCAGTGGGATGTGCTTTTGATGAATCTATTGTTCACCACAAGTACTTCAAGGAGAATCCAGACTATGATAACCCGAGTTACAACTCTAAGTATGGGATATACACTGAAGGCTGTGGGCTCGACAATGTGTTAATGTCTTGGGGACATGATGATTACATGTACCTTGTTGCGAAGGAGAATCAAACTACTTTACCATCAGCCGGTCTTTTCATCATCAGATACCATTCGTTCTACGCTCTTCACAAATCAGAAGCATACAAGCATTTGATGAACAATGAAGACAGAGAGAACATGAAGTGGCTTAAAGTGTTCAACAAGTATGATCTCTACAGCAAAAGCAAAGTCCGCGTAAACGTTGAGGAAGTGAAACCATATTATCTCTCCCTTACCAACAAGTATTTTCCGTCCAAGCTAAAATGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003824 GO:0008150 GO:0008152 GO:0016491 GO:0016701 GO:0050113 GO:0055114
KEGG Pathways
Metabolic & Signaling
ko00053 ko00562 map00053 map00562
Pfam Domains
Protein Families
MIOX

Protein Analysis

311

Amino Acids

36.57

Weight (kDa)

4.93

Isoelectric Point (pI)

44.63

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MIOX PF05153 63 - 311 1.7e-125 Myo-inositol oxygenase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 101
AccII CGCG 1 cut(s) 861
AciI CCGC 1 cut(s) 859
AclI AACGTT 1 cut(s) 867
AclWI GGATC 1 cut(s) 329
AcoI YGGCCR 1 cut(s) 220
AcsI RAATTY 1 cut(s) 197
AcuI CTGAAG 4 cut(s) 136, 356, 402, 639
AfaI GTAC 3 cut(s) 277, 557, 674
AfiI CCNNNNNNNGG 2 cut(s) 490, 713
AflIII ACRYGT 1 cut(s) 669
AgeI ACCGGT 1 cut(s) 428
AgsI TTSAA 2 cut(s) 562, 826
AluBI AGCT 5 cut(s) 268, 307, 380, 481, 925
AluI AGCT 5 cut(s) 268, 307, 380, 481, 925
Alw21I GWGCWC 1 cut(s) 483
AlwI GGATC 1 cut(s) 329
Ama87I CYCGRG 1 cut(s) 586
AoxI GGCC 1 cut(s) 220
ApoI RAATTY 1 cut(s) 197
ArsI GACNNNNNNTTYG 2 cut(s) 840, 872
AsiGI ACCGGT 1 cut(s) 428
AsuHPI GGTGA 3 cut(s) 488, 515, 539
AvaI CYCGRG 1 cut(s) 586
BalI TGGCCA 1 cut(s) 222
BanII GRGCYC 2 cut(s) 483, 633
BbsI GAAGAC 2 cut(s) 417, 798
Bbv12I GWGCWC 1 cut(s) 483
BccI CCATC 3 cut(s) 395, 429, 715
BclI TGATCA 1 cut(s) 28
BfmI CTRYAG 1 cut(s) 841
BfuAI ACCTGC 1 cut(s) 101
BmcAI AGTACT 1 cut(s) 557
BmeT110I CYCGRG 1 cut(s) 586
BmiI GGNNCC 2 cut(s) 123, 419
BmsI GCATC 4 cut(s) 28, 97, 154, 373
BpiI GAAGAC 2 cut(s) 417, 798
BsaWI WCCGGW 1 cut(s) 428
BsaXI ACNNNNNCTCC 2 cut(s) 172, 202
Bsc4I CCNNNNNNNGG 2 cut(s) 490, 713
Bse118I RCCGGY 2 cut(s) 428, 713
Bse1I ACTGG 2 cut(s) 419, 515
BseGI GGATG 1 cut(s) 527
BseLI CCNNNNNNNGG 2 cut(s) 490, 713
BseMII CTCAG 3 cut(s) 159, 368, 500
BseNI ACTGG 2 cut(s) 419, 515
BseRI GAGGAG 1 cut(s) 114
Bsh1236I CGCG 1 cut(s) 861
BshFI GGCC 1 cut(s) 222
BshTI ACCGGT 1 cut(s) 428
BsiHKAI GWGCWC 1 cut(s) 483
BsiHKCI CYCGRG 1 cut(s) 586
BsiSI CCGG 2 cut(s) 429, 714
BsiWI CGTACG 1 cut(s) 275
BslFI GGGAC 1 cut(s) 669
BslI CCNNNNNNNGG 2 cut(s) 490, 713
BsmFI GGGAC 1 cut(s) 669
BsnI GGCC 1 cut(s) 222
BsoBI CYCGRG 1 cut(s) 586
Bsp1286I GDGCHC 2 cut(s) 483, 633
Bsp143I GATC 6 cut(s) 16, 28, 334, 357, 442, 835
BspACI CCGC 1 cut(s) 859
BspANI GGCC 1 cut(s) 222
BspCNI CTCAG 3 cut(s) 160, 367, 499
BspFNI CGCG 1 cut(s) 861
BspLI GGNNCC 2 cut(s) 123, 419
BspMI ACCTGC 1 cut(s) 101
BspPI GGATC 1 cut(s) 329
BspQI GCTCTTC 1 cut(s) 756
BsrFI RCCGGY 2 cut(s) 428, 713
BsrI ACTGG 2 cut(s) 419, 515
BssAI RCCGGY 2 cut(s) 428, 713
BssMI GATC 6 cut(s) 16, 28, 334, 357, 442, 835
Bst4CI ACNGT 1 cut(s) 229
Bst6I CTCTTC 3 cut(s) 178, 472, 756
BstC8I GCNNGC 1 cut(s) 305
BstDEI CTNAG 4 cut(s) 168, 354, 486, 600
BstF5I GGATG 1 cut(s) 527
BstFNI CGCG 1 cut(s) 861
BstKTI GATC 6 cut(s) 19, 31, 337, 360, 445, 838
BstMBI GATC 6 cut(s) 16, 28, 334, 357, 442, 835
BstMWI GCNNNNNNNGC 1 cut(s) 858
BstNSI RCATGY 1 cut(s) 673
BstSFI CTRYAG 1 cut(s) 841
BstUI CGCG 1 cut(s) 861
BstV2I GAAGAC 2 cut(s) 417, 798
BstXI CCANNNNNNTGG 1 cut(s) 446
BsuRI GGCC 1 cut(s) 222
BtsCI GGATG 1 cut(s) 527
BtsIMutI CAGTG 3 cut(s) 494, 522, 615
BveI ACCTGC 1 cut(s) 101
Cac8I GCNNGC 1 cut(s) 305
Cfr10I RCCGGY 2 cut(s) 428, 713
Csp6I GTAC 3 cut(s) 276, 556, 673
CspAI ACCGGT 1 cut(s) 428
CviAII CATG 3 cut(s) 659, 670, 805
CviQI GTAC 3 cut(s) 276, 556, 673
DdeI CTNAG 4 cut(s) 168, 354, 486, 600
DpnI GATC 6 cut(s) 18, 30, 336, 359, 444, 837
DpnII GATC 6 cut(s) 16, 28, 334, 357, 442, 835
EaeI YGGCCR 1 cut(s) 220
Eam1104I CTCTTC 3 cut(s) 178, 472, 756
EarI CTCTTC 3 cut(s) 178, 472, 756
Ecl136II GAGCTC 1 cut(s) 481
Eco24I GRGCYC 2 cut(s) 483, 633
Eco53kI GAGCTC 1 cut(s) 481
Eco57I CTGAAG 4 cut(s) 136, 356, 402, 639
Eco88I CYCGRG 1 cut(s) 586
EcoICRI GAGCTC 1 cut(s) 481
EcoT38I GRGCYC 2 cut(s) 483, 633
FaeI CATG 3 cut(s) 662, 673, 808
FalI AAGNNNNNCTT 2 cut(s) 444, 476
FaqI GGGAC 1 cut(s) 669
FatI CATG 3 cut(s) 658, 669, 804
FbaI TGATCA 1 cut(s) 28
FokI GGATG 1 cut(s) 534
FriOI GRGCYC 2 cut(s) 483, 633
HaeIII GGCC 1 cut(s) 222
HapII CCGG 2 cut(s) 429, 714
Hin1II CATG 3 cut(s) 662, 673, 808
HinfI GANTC 5 cut(s) 64, 207, 536, 568, 691
HpaII CCGG 2 cut(s) 429, 714
HphI GGTGA 3 cut(s) 488, 515, 539
Hpy166II GTNNAC 2 cut(s) 547, 865
Hpy188I TCNGA 9 cut(s) 28, 33, 312, 357, 375, 392, 426, 731, 763
Hpy188III TCNNGA 3 cut(s) 238, 338, 572
Hpy8I GTNNAC 2 cut(s) 547, 865
Hpy99I CGWCG 2 cut(s) 329, 503
HpyAV CCTTC 3 cut(s) 160, 614, 679
HpyCH4III ACNGT 1 cut(s) 229
HpyCH4IV ACGT 1 cut(s) 867
HpyCH4V TGCA 2 cut(s) 41, 110
HpyF10VI GCNNNNNNNGC 1 cut(s) 858
HpyF3I CTNAG 4 cut(s) 168, 354, 486, 600
HpySE526I ACGT 1 cut(s) 867
Hsp92II CATG 3 cut(s) 662, 673, 808
Ksp22I TGATCA 1 cut(s) 28
Kzo9I GATC 6 cut(s) 16, 28, 334, 357, 442, 835
LguI GCTCTTC 1 cut(s) 756
LmnI GCTCC 3 cut(s) 127, 423, 486
LweI GCATC 4 cut(s) 28, 97, 154, 373
MaeII ACGT 1 cut(s) 867
MaeIII GTNAC 1 cut(s) 590
MalI GATC 6 cut(s) 18, 30, 336, 359, 444, 837
MboI GATC 6 cut(s) 16, 28, 334, 357, 442, 835
MhlI GDGCHC 2 cut(s) 483, 633
MlsI TGGCCA 1 cut(s) 222
MluCI AATT 1 cut(s) 197
MluNI TGGCCA 1 cut(s) 222
MlyI GAGTC 1 cut(s) 216
MnlI CCTC 9 cut(s) 76, 112, 135, 179, 187, 234, 363, 495, 865
Mox20I TGGCCA 1 cut(s) 222
MscI TGGCCA 1 cut(s) 222
MseI TTAA 2 cut(s) 644, 816
Msp20I TGGCCA 1 cut(s) 222
MspA1I CMGCKG 1 cut(s) 380
MspI CCGG 2 cut(s) 429, 714
MvnI CGCG 1 cut(s) 861
MwoI GCNNNNNNNGC 1 cut(s) 858
NdeII GATC 6 cut(s) 16, 28, 334, 357, 442, 835
NlaIII CATG 3 cut(s) 662, 673, 808
NlaIV GGNNCC 2 cut(s) 123, 419
NspI RCATGY 1 cut(s) 673
PciI ACATGT 1 cut(s) 669
PciSI GCTCTTC 1 cut(s) 756
PfeI GAWTC 4 cut(s) 64, 536, 568, 691
Pfl23II CGTACG 1 cut(s) 275
PinAI ACCGGT 1 cut(s) 428
PleI GAGTC 1 cut(s) 215
PpsI GAGTC 1 cut(s) 215
PscI ACATGT 1 cut(s) 669
Psp124BI GAGCTC 1 cut(s) 483
Psp1406I AACGTT 1 cut(s) 867
PspLI CGTACG 1 cut(s) 275
PspN4I GGNNCC 2 cut(s) 123, 419
PvuII CAGCTG 1 cut(s) 380
RsaI GTAC 3 cut(s) 277, 557, 674
RsaNI GTAC 3 cut(s) 276, 556, 673
SacI GAGCTC 1 cut(s) 483
SapI GCTCTTC 1 cut(s) 756
SaqAI TTAA 2 cut(s) 644, 816
Sau3AI GATC 6 cut(s) 16, 28, 334, 357, 442, 835
ScaI AGTACT 1 cut(s) 557
SchI GAGTC 1 cut(s) 216
SduI GDGCHC 2 cut(s) 483, 633
SfaNI GCATC 4 cut(s) 28, 97, 154, 373
SfcI CTRYAG 1 cut(s) 841
Sse9I AATT 1 cut(s) 197
SsiI CCGC 1 cut(s) 859
SstI GAGCTC 1 cut(s) 483
TaaI ACNGT 1 cut(s) 229
TaiI ACGT 1 cut(s) 870
TaqI TCGA 4 cut(s) 117, 324, 360, 633
TasI AATT 1 cut(s) 197
TatI WGTACW 1 cut(s) 555
TfiI GAWTC 4 cut(s) 64, 536, 568, 691
Tru1I TTAA 2 cut(s) 644, 816
Tru9I TTAA 2 cut(s) 644, 816
TscAI CASTG 3 cut(s) 494, 522, 622
TspDTI ATGAA 7 cut(s) 423, 459, 549, 712, 797, 804, 821
TspGWI ACGGA 2 cut(s) 293, 906
TspRI CASTG 3 cut(s) 494, 522, 622
XapI RAATTY 1 cut(s) 197
XceI RCATGY 1 cut(s) 673
ZrmI AGTACT 1 cut(s) 557
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.