Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0001948

Physical Location & Seq

Genomic Coordinates Forward (+)

64012588 .. 64015534

Gene Structure 2947 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG440700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 678 bp

ATGACCATCCTCATTGAGCAGCAGGAGCACCAACCTGAGTTTGGAGTTGAAGGTGGAGGAGGGAAGGAGGTTGTTGTGGATGAAAAGGAATTGATCTTGGATGGTGGATTTTTGGTGCTGCATACCAACTCCTTTGGACAAACTTTTAGGGATTATGATGCAGAAGGTGAGAGGCAACCAAGTGTGGAGAAATTCTACAAGATCAATCACATTAACCAGACTTATGACTTCGTCCAGAGAATGAGAAAAGAGTACAGCAAATTGAACAGGGTGGAGATGAGCATATGGGAATGCTGTGAACTTCTCAATGAGGTTGTAGACGAGAGTGATCCAGACTTGGACGAACCTCAAATTGAGCACTTATTGCAAACAGCTGAAGCCATTAGAAAGGACTATCCCAATGAAGATTGGCTACACTTGACTGGCCTTATCCATGATCTTGGGAAGGTGCTTTTTCTTCCTTGCTTTGGAGAGCTTCCTCAATGGGCTGTTGTAGGTGACACTTTCCCAGTTGGTTGTGCTTTTGACGAGTCCATTGTTCACCACAAGTATTTCAAGGAGAATCCCGACTACAACAATCCGGCTTACAACACTAAACATGGAGTTTACTCTGAGAAATGTGGACTCAACAACGTATTGATGTCATGGGGGCATGATGACTACATGTATCTGTTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0008150 GO:0008152 GO:0016491 GO:0016701 GO:0050113 GO:0055114

KEGG Pathways

Metabolic & Signaling

ko00053 ko00562 map00053 map00562

Pfam Domains

Protein Families

MIOX

Protein Analysis

225

Amino Acids

26.08

Weight (kDa)

4.62

Isoelectric Point (pI)

41.86

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MIOX	PF05153	61 - 224	3.4e-84	Myo-inositol oxygenase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0001948)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G14520 AT1G14520 AT1G14520 AT1G14520
fragaria_vesca	FvH4_4g36370 FvH4_4g36370 FvH4_6g32720 FvH4_6g32720 FvH4_6g32720 FvH4_6g32720
malus_domestica	MD16G1007900.v1.1 MD17G1179500.v1.1 MD17G1179700.v1.1
prunus_persica	Prupe.1G343000_v2.0.a1 Prupe.1G343000_v2.0.a1 Prupe.1G343000_v2.0.a1 Prupe.3G055000_v2.0.a1 Prupe.3G055000_v2.0.a1 Prupe.3G055000_v2.0.a1
pyrus_communis	pycom16g00770 pycom17g18890
rosa_chinensis	RchiOBHm_Chr2g0141741 RchiOBHm_Chr4g0446111
rosa_laevigata	RLG00000005691 RLG00000019932
rosa_multiflora	Rmu_co8191254.1_g000001 Rmu_sc0002928.1_g000009 Rmu_sc0030751.1_g000001 Rmu_sc0035578.1_g000001
rosa_roxburghii	Rroxscaffold_2G00103910 Rroxscaffold_5G00386510
rosa_rugosa	Rorug02G0368400 Rorug02G0368500
rosa_samantha	Rh2AG420100 Rh2BG429500 Rh2BG431000 Rh2CG407300 Rh2DG439400 Rh2DG440700 Rh4AG429500 Rh4BG439000 Rh4CG456300 Rh4DG437400
rosa_wichuraiana	Rw2G034450 Rw4G036700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	318
AclWI	GGATC	1 cut(s)	323
AcsI	RAATTY	1 cut(s)	191
AcuI	CTGAAG	1 cut(s)	396
AfaI	GTAC	1 cut(s)	254
AfiI	CCNNNNNNNGG	2 cut(s)	41, 467
AflIII	ACRYGT	1 cut(s)	663
AgsI	TTSAA	3 cut(s)	50, 265, 556
AluBI	AGCT	2 cut(s)	374, 475
AluI	AGCT	2 cut(s)	374, 475
Alw21I	GWGCWC	2 cut(s)	30, 360
AlwI	GGATC	1 cut(s)	323
AoxI	GGCC	1 cut(s)	424
ApeKI	GCWGC	2 cut(s)	19, 118
ApoI	RAATTY	1 cut(s)	191
AsuHPI	GGTGA	3 cut(s)	179, 509, 533
BarI	GAAGNNNNNNTAC	2 cut(s)	396, 428
Bbv12I	GWGCWC	2 cut(s)	30, 360
BbvI	GCAGC	2 cut(s)	31, 105
BccI	CCATC	2 cut(s)	14, 95
BisI	GCNGC	2 cut(s)	20, 119
BlsI	GCNGC	2 cut(s)	21, 120
BmrI	ACTGGG	1 cut(s)	503
BmsI	GCATC	1 cut(s)	148
BmuI	ACTGGG	1 cut(s)	503
Bsc4I	CCNNNNNNNGG	2 cut(s)	41, 467
Bse1I	ACTGG	2 cut(s)	427, 509
BseGI	GGATG	3 cut(s)	6, 85, 106
BseLI	CCNNNNNNNGG	2 cut(s)	41, 467
BseMII	CTCAG	2 cut(s)	27, 603
BseNI	ACTGG	2 cut(s)	427, 509
BseRI	GAGGAG	1 cut(s)	72
BseXI	GCAGC	2 cut(s)	31, 105
BshFI	GGCC	1 cut(s)	426
BsiHKAI	GWGCWC	2 cut(s)	30, 360
BsiSI	CCGG	1 cut(s)	581
BslI	CCNNNNNNNGG	2 cut(s)	41, 467
BsmI	GAATGC	1 cut(s)	296
BsnI	GGCC	1 cut(s)	426
Bsp1286I	GDGCHC	2 cut(s)	30, 360
Bsp143I	GATC	4 cut(s)	93, 201, 328, 436
BspANI	GGCC	1 cut(s)	426
BspCNI	CTCAG	2 cut(s)	28, 604
BspPI	GGATC	1 cut(s)	323
BsrI	ACTGG	2 cut(s)	427, 509
BssMI	GATC	4 cut(s)	93, 201, 328, 436
BstAPI	GCANNNNNTGC	1 cut(s)	364
BstDEI	CTNAG	2 cut(s)	36, 612
BstF5I	GGATG	3 cut(s)	6, 85, 106
BstKTI	GATC	4 cut(s)	96, 204, 331, 439
BstMBI	GATC	4 cut(s)	93, 201, 328, 436
BstMWI	GCNNNNNNNGC	2 cut(s)	25, 364
BstNSI	RCATGY	1 cut(s)	667
BstV1I	GCAGC	2 cut(s)	31, 105
BstXI	CCANNNNNNTGG	1 cut(s)	440
BsuRI	GGCC	1 cut(s)	426
BtsCI	GGATG	3 cut(s)	6, 85, 106
Csp6I	GTAC	1 cut(s)	253
CviAII	CATG	5 cut(s)	434, 599, 645, 653, 664
CviJI	RGCY	7 cut(s)	374, 380, 412, 426, 475, 488, 584
CviKI_1	RGCY	7 cut(s)	374, 380, 412, 426, 475, 488, 584
CviQI	GTAC	1 cut(s)	253
DdeI	CTNAG	2 cut(s)	36, 612
DpnI	GATC	4 cut(s)	95, 203, 330, 438
DpnII	GATC	4 cut(s)	93, 201, 328, 436
Eco57I	CTGAAG	1 cut(s)	396
FaeI	CATG	5 cut(s)	437, 602, 648, 656, 667
FatI	CATG	5 cut(s)	433, 598, 644, 652, 663
FauNDI	CATATG	1 cut(s)	284
FblI	GTMKAC	1 cut(s)	318
Fnu4HI	GCNGC	2 cut(s)	20, 119
FokI	GGATG	2 cut(s)	92, 113
Fsp4HI	GCNGC	2 cut(s)	20, 119
GluI	GCNGC	2 cut(s)	20, 119
HaeIII	GGCC	1 cut(s)	426
HapII	CCGG	1 cut(s)	581
Hin1II	CATG	5 cut(s)	437, 602, 648, 656, 667
HinfI	GANTC	3 cut(s)	530, 562, 624
HpaII	CCGG	1 cut(s)	581
HphI	GGTGA	3 cut(s)	179, 509, 533
Hpy166II	GTNNAC	5 cut(s)	299, 319, 541, 607, 623
Hpy188I	TCNGA	1 cut(s)	613
Hpy188III	TCNNGA	3 cut(s)	235, 332, 566
Hpy8I	GTNNAC	5 cut(s)	299, 319, 541, 607, 623
HpyAV	CCTTC	4 cut(s)	44, 58, 158, 439
HpyCH4IV	ACGT	1 cut(s)	633
HpyCH4V	TGCA	3 cut(s)	121, 161, 367
HpyF10VI	GCNNNNNNNGC	2 cut(s)	25, 364
HpyF3I	CTNAG	2 cut(s)	36, 612
HpySE526I	ACGT	1 cut(s)	633
Hsp92II	CATG	5 cut(s)	437, 602, 648, 656, 667
Kzo9I	GATC	4 cut(s)	93, 201, 328, 436
LmnI	GCTCC	1 cut(s)	25
LpnPI	CCDG	9 cut(s)	8, 48, 230, 248, 253, 345, 408, 522, 594
Lsp1109I	GCAGC	2 cut(s)	31, 105
LweI	GCATC	1 cut(s)	148
MaeII	ACGT	1 cut(s)	633
MaeIII	GTNAC	1 cut(s)	497
MalI	GATC	4 cut(s)	95, 203, 330, 438
MboI	GATC	4 cut(s)	93, 201, 328, 436
MboII	GAAGA	2 cut(s)	416, 449
MhlI	GDGCHC	2 cut(s)	30, 360
MluCI	AATT	4 cut(s)	89, 191, 260, 351
MlyI	GAGTC	2 cut(s)	539, 618
MnlI	CCTC	8 cut(s)	20, 50, 53, 61, 165, 304, 357, 489
MseI	TTAA	1 cut(s)	213
MspA1I	CMGCKG	1 cut(s)	374
MspI	CCGG	1 cut(s)	581
Mva1269I	GAATGC	1 cut(s)	296
MwoI	GCNNNNNNNGC	2 cut(s)	25, 364
NdeI	CATATG	1 cut(s)	284
NdeII	GATC	4 cut(s)	93, 201, 328, 436
NlaIII	CATG	5 cut(s)	437, 602, 648, 656, 667
NmuCI	GTSAC	1 cut(s)	497
NspI	RCATGY	1 cut(s)	667
PciI	ACATGT	1 cut(s)	663
PctI	GAATGC	1 cut(s)	296
PfeI	GAWTC	1 cut(s)	562
PflFI	GACNNNGTC	1 cut(s)	230
PkrI	GCNGC	2 cut(s)	21, 120
PleI	GAGTC	2 cut(s)	538, 618
PpsI	GAGTC	2 cut(s)	538, 618
PscI	ACATGT	1 cut(s)	663
PsyI	GACNNNGTC	1 cut(s)	230
PvuII	CAGCTG	1 cut(s)	374
RsaI	GTAC	1 cut(s)	254
RsaNI	GTAC	1 cut(s)	253
SaqAI	TTAA	1 cut(s)	213
SatI	GCNGC	2 cut(s)	20, 119
Sau3AI	GATC	4 cut(s)	93, 201, 328, 436
SchI	GAGTC	2 cut(s)	539, 618
SduI	GDGCHC	2 cut(s)	30, 360
SfaNI	GCATC	1 cut(s)	148
Sse9I	AATT	4 cut(s)	89, 191, 260, 351
TaiI	ACGT	1 cut(s)	636
TasI	AATT	4 cut(s)	89, 191, 260, 351
TatI	WGTACW	1 cut(s)	252
TfiI	GAWTC	1 cut(s)	562
Tru1I	TTAA	1 cut(s)	213
Tru9I	TTAA	1 cut(s)	213
TseFI	GTSAC	1 cut(s)	497
TseI	GCWGC	2 cut(s)	19, 118
Tsp45I	GTSAC	1 cut(s)	497
TspDTI	ATGAA	2 cut(s)	96, 417
Tth111I	GACNNNGTC	1 cut(s)	230
XapI	RAATTY	1 cut(s)	191
XceI	RCATGY	1 cut(s)	667
XcmI	CCANNNNNNNNNTGG	1 cut(s)	38
XmiI	GTMKAC	1 cut(s)	318

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.