Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

OG0001948

Physical Location & Seq

Genomic Coordinates Forward (+)

3861385 .. 3864679

Gene Structure 3295 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G055000.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 930 bp

ATGACCATCCTCATTGAGCAGCCTGAATTTGGAGTTGAAGTTGGAACTGAGGCAGGGGAGAAAAAGGTGTTTGAAGAGGAGAAGGAATTGGTGTTGGATGATGGATTATTTGTGGTGCCACATACCAACTCATTTGGACAGACATTTAGGGATTATGATGCAGAAGGTGAAAGGCAACCAAGTGTGGAGATTTTCTACCAGATAAATCACATCAACCAGACTTATGACTTTGTTCAGAGAATGAGAAAAGAGTACAGCAAATTGAACAGGGTGGAGATGAGCATATGGGAATGCTGTGAGCTTCTGAATGAGGTTGTGGATGAGAGTGATCCGGACTTGGACGAACCTCAAATCGAGCACTTGTTGCAAACGGCTGAAGCCATTAGAAAGGACTATCCCAATGAAGATTGGCTGCACTTGACTGGCCTCATCCATGATCTTGGGAAGGTGCTTCTTCTTCCTAGCTTTGGGGAGCTTCCTCAATGGGCTGTTGTCGGTGACACATTCCCAGTTGGCTGTTCTTTTGACCAAGCCAATGTTCATCACAAGTATTTCAAGGAAAATCCTGACTACTATAATCCTGCTTACAACACCAAATTTGGAGTTTACTCAGAGGGATGTGGACTCGAAAATGTAATGATGTCGTGGGGGCATGACGACTACATGTATTTGGTGGCCAAGGAGAATAATTGCACTCTACCCTCAGCAGCTCTGTTCATCATTAGATACCACTCATTCTATGCTTTACACAAGGCAGGAGCATATAAGCACTTAATGAACGAAGAGGATGTCAAAAACCTGAACTGGCTCCACGTATTCAACAAGTATGACCTTTACAGCAAGAGCAAGGTACGGATTGATGTTGAGAAGGTGAAGCCATACTATCTCTCTCTCATTGAAAAGTATTTCCCTTCCAAGCTAAGATGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0008150 GO:0008152 GO:0016491 GO:0016701 GO:0050113 GO:0055114

KEGG Pathways

Metabolic & Signaling

ko00053 ko00562 map00053 map00562

Pfam Domains

Protein Families

MIOX

Protein Analysis

310

Amino Acids

36.21

Weight (kDa)

4.93

Isoelectric Point (pI)

47.32

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001948)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G14520 AT1G14520 AT1G14520 AT1G14520
fragaria_vesca	FvH4_4g36370 FvH4_4g36370 FvH4_6g32720 FvH4_6g32720 FvH4_6g32720 FvH4_6g32720
malus_domestica	MD16G1007900.v1.1 MD17G1179500.v1.1 MD17G1179700.v1.1
prunus_persica	Prupe.1G343000_v2.0.a1 Prupe.1G343000_v2.0.a1 Prupe.1G343000_v2.0.a1 Prupe.3G055000_v2.0.a1 Prupe.3G055000_v2.0.a1 Prupe.3G055000_v2.0.a1
pyrus_communis	pycom16g00770 pycom17g18890
rosa_chinensis	RchiOBHm_Chr2g0141741 RchiOBHm_Chr4g0446111
rosa_laevigata	RLG00000005691 RLG00000019932
rosa_multiflora	Rmu_co8191254.1_g000001 Rmu_sc0002928.1_g000009 Rmu_sc0030751.1_g000001 Rmu_sc0035578.1_g000001
rosa_roxburghii	Rroxscaffold_2G00103910 Rroxscaffold_5G00386510
rosa_rugosa	Rorug02G0368400 Rorug02G0368500
rosa_samantha	Rh2AG420100 Rh2BG429500 Rh2BG431000 Rh2CG407300 Rh2DG439400 Rh2DG440700 Rh4AG429500 Rh4BG439000 Rh4CG456300 Rh4DG437400
rosa_wichuraiana	Rw2G034450 Rw4G036700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	115
AccIII	TCCGGA	1 cut(s)	331
AclWI	GGATC	1 cut(s)	323
AcoI	YGGCCR	1 cut(s)	675
AcsI	RAATTY	2 cut(s)	26, 596
AcuI	CTGAAG	1 cut(s)	396
AfaI	GTAC	2 cut(s)	254, 852
AfiI	CCNNNNNNNGG	2 cut(s)	29, 467
AflIII	ACRYGT	1 cut(s)	663
AgsI	TTSAA	6 cut(s)	38, 74, 265, 556, 820, 899
AjuI	GAANNNNNNNTTGG	2 cut(s)	522, 554
AluBI	AGCT	5 cut(s)	301, 465, 475, 710, 919
AluI	AGCT	5 cut(s)	301, 465, 475, 710, 919
Alw21I	GWGCWC	1 cut(s)	360
AlwI	GGATC	1 cut(s)	323
Aor13HI	TCCGGA	1 cut(s)	331
AoxI	GGCC	2 cut(s)	424, 675
ApeKI	GCWGC	3 cut(s)	19, 412, 707
ApoI	RAATTY	2 cut(s)	26, 596
ArsI	GACNNNNNNTTYG	2 cut(s)	774, 806
AsuHPI	GGTGA	3 cut(s)	179, 509, 883
BalI	TGGCCA	1 cut(s)	677
BanI	GGYRCC	1 cut(s)	115
Bbv12I	GWGCWC	1 cut(s)	360
BbvCI	CCTCAGC	1 cut(s)	703
BbvI	GCAGC	3 cut(s)	31, 399, 719
BccI	CCATC	3 cut(s)	14, 95, 918
BceAI	ACGGC	1 cut(s)	387
BfaI	CTAG	1 cut(s)	462
BisI	GCNGC	3 cut(s)	20, 413, 708
BlsI	GCNGC	3 cut(s)	21, 414, 709
BmiI	GGNNCC	2 cut(s)	117, 809
BmrI	ACTGGG	1 cut(s)	503
BmsI	GCATC	1 cut(s)	148
BmuI	ACTGGG	1 cut(s)	503
Bpu10I	CCTNAGC	1 cut(s)	703
BsaAI	YACGTR	1 cut(s)	814
BsaJI	CCNNGG	1 cut(s)	678
BsaWI	WCCGGW	1 cut(s)	331
BsaXI	ACNNNNNCTCC	2 cut(s)	24, 54
Bsc4I	CCNNNNNNNGG	2 cut(s)	29, 467
Bse1I	ACTGG	3 cut(s)	427, 509, 809
BseAI	TCCGGA	1 cut(s)	331
BseDI	CCNNGG	1 cut(s)	678
BseGI	GGATG	6 cut(s)	6, 103, 325, 429, 623, 793
BseLI	CCNNNNNNNGG	2 cut(s)	29, 467
BseMII	CTCAG	3 cut(s)	39, 624, 717
BseNI	ACTGG	3 cut(s)	427, 509, 809
BseRI	GAGGAG	1 cut(s)	92
BseXI	GCAGC	3 cut(s)	31, 399, 719
BsgI	GTGCAG	1 cut(s)	398
BshFI	GGCC	2 cut(s)	426, 677
BshNI	GGYRCC	1 cut(s)	115
BsiHKAI	GWGCWC	1 cut(s)	360
BsiSI	CCGG	1 cut(s)	332
BslI	CCNNNNNNNGG	2 cut(s)	29, 467
BsmI	GAATGC	1 cut(s)	296
BsnI	GGCC	2 cut(s)	426, 677
Bsp1286I	GDGCHC	1 cut(s)	360
Bsp13I	TCCGGA	1 cut(s)	331
Bsp143I	GATC	2 cut(s)	328, 436
BspANI	GGCC	2 cut(s)	426, 677
BspCNI	CTCAG	3 cut(s)	40, 623, 716
BspEI	TCCGGA	1 cut(s)	331
BspLI	GGNNCC	2 cut(s)	117, 809
BspPI	GGATC	1 cut(s)	323
BspT107I	GGYRCC	1 cut(s)	115
BsrI	ACTGG	3 cut(s)	427, 509, 809
BssECI	CCNNGG	1 cut(s)	678
BssMI	GATC	2 cut(s)	328, 436
BssT1I	CCWWGG	1 cut(s)	678
Bst6I	CTCTTC	2 cut(s)	69, 777
BstAPI	GCANNNNNTGC	1 cut(s)	364
BstBAI	YACGTR	1 cut(s)	814
BstDEI	CTNAG	4 cut(s)	48, 610, 703, 920
BstF5I	GGATG	6 cut(s)	6, 103, 325, 429, 623, 793
BstKTI	GATC	2 cut(s)	331, 439
BstMBI	GATC	2 cut(s)	328, 436
BstMWI	GCNNNNNNNGC	1 cut(s)	364
BstNSI	RCATGY	1 cut(s)	667
BstV1I	GCAGC	3 cut(s)	31, 399, 719
BstXI	CCANNNNNNTGG	1 cut(s)	440
BsuRI	GGCC	2 cut(s)	426, 677
BtsCI	GGATG	6 cut(s)	6, 103, 325, 429, 623, 793
Csp6I	GTAC	2 cut(s)	253, 851
CviAII	CATG	3 cut(s)	434, 653, 664
CviQI	GTAC	2 cut(s)	253, 851
DdeI	CTNAG	4 cut(s)	48, 610, 703, 920
DpnI	GATC	2 cut(s)	330, 438
DpnII	GATC	2 cut(s)	328, 436
EaeI	YGGCCR	1 cut(s)	675
Eam1104I	CTCTTC	2 cut(s)	69, 777
EarI	CTCTTC	2 cut(s)	69, 777
Eco130I	CCWWGG	1 cut(s)	678
Eco57I	CTGAAG	1 cut(s)	396
EcoT14I	CCWWGG	1 cut(s)	678
ErhI	CCWWGG	1 cut(s)	678
FaeI	CATG	3 cut(s)	437, 656, 667
FatI	CATG	3 cut(s)	433, 652, 663
FauNDI	CATATG	1 cut(s)	284
Fnu4HI	GCNGC	3 cut(s)	20, 413, 708
FokI	GGATG	5 cut(s)	110, 332, 416, 630, 800
Fsp4HI	GCNGC	3 cut(s)	20, 413, 708
FspBI	CTAG	1 cut(s)	462
GluI	GCNGC	3 cut(s)	20, 413, 708
HaeIII	GGCC	2 cut(s)	426, 677
HapII	CCGG	1 cut(s)	332
Hin1II	CATG	3 cut(s)	437, 656, 667
HinfI	GANTC	1 cut(s)	624
HpaII	CCGG	1 cut(s)	332
HphI	GGTGA	3 cut(s)	179, 509, 883
Hpy166II	GTNNAC	2 cut(s)	607, 623
Hpy188I	TCNGA	3 cut(s)	237, 306, 613
Hpy188III	TCNNGA	2 cut(s)	332, 566
Hpy8I	GTNNAC	2 cut(s)	607, 623
HpyAV	CCTTC	5 cut(s)	76, 158, 439, 862, 921
HpyCH4IV	ACGT	1 cut(s)	813
HpyCH4V	TGCA	4 cut(s)	161, 367, 415, 693
HpyF10VI	GCNNNNNNNGC	1 cut(s)	364
HpyF3I	CTNAG	4 cut(s)	48, 610, 703, 920
HpySE526I	ACGT	1 cut(s)	813
Hsp92II	CATG	3 cut(s)	437, 656, 667
Kpn2I	TCCGGA	1 cut(s)	331
Kzo9I	GATC	2 cut(s)	328, 436
LmnI	GCTCC	3 cut(s)	472, 758, 813
Lsp1109I	GCAGC	3 cut(s)	31, 399, 719
LweI	GCATC	1 cut(s)	148
MaeI	CTAG	1 cut(s)	462
MaeII	ACGT	1 cut(s)	813
MaeIII	GTNAC	1 cut(s)	497
MalI	GATC	2 cut(s)	330, 438
MboI	GATC	2 cut(s)	328, 436
MboII	GAAGA	5 cut(s)	86, 416, 446, 449, 794
MhlI	GDGCHC	1 cut(s)	360
MlsI	TGGCCA	1 cut(s)	677
MluCI	AATT	5 cut(s)	26, 86, 260, 596, 688
MluNI	TGGCCA	1 cut(s)	677
MlyI	GAGTC	1 cut(s)	618
MmeI	TCCRAC	2 cut(s)	22, 75
Mox20I	TGGCCA	1 cut(s)	677
MroI	TCCGGA	1 cut(s)	331
MscI	TGGCCA	1 cut(s)	677
MseI	TTAA	1 cut(s)	773
Msp20I	TGGCCA	1 cut(s)	677
MspI	CCGG	1 cut(s)	332
Mva1269I	GAATGC	1 cut(s)	296
MwoI	GCNNNNNNNGC	1 cut(s)	364
NdeI	CATATG	1 cut(s)	284
NdeII	GATC	2 cut(s)	328, 436
NlaIII	CATG	3 cut(s)	437, 656, 667
NlaIV	GGNNCC	2 cut(s)	117, 809
NmuCI	GTSAC	1 cut(s)	497
NspI	RCATGY	1 cut(s)	667
PciI	ACATGT	1 cut(s)	663
PctI	GAATGC	1 cut(s)	296
PkrI	GCNGC	3 cut(s)	21, 414, 709
PleI	GAGTC	1 cut(s)	618
PpsI	GAGTC	1 cut(s)	618
Ppu21I	YACGTR	1 cut(s)	814
PscI	ACATGT	1 cut(s)	663
PspN4I	GGNNCC	2 cut(s)	117, 809
RsaI	GTAC	2 cut(s)	254, 852
RsaNI	GTAC	2 cut(s)	253, 851
SaqAI	TTAA	1 cut(s)	773
SatI	GCNGC	3 cut(s)	20, 413, 708
Sau3AI	GATC	2 cut(s)	328, 436
SchI	GAGTC	1 cut(s)	618
SduI	GDGCHC	1 cut(s)	360
SfaNI	GCATC	1 cut(s)	148
Sse9I	AATT	5 cut(s)	26, 86, 260, 596, 688
SspMI	CTAG	1 cut(s)	462
StyI	CCWWGG	1 cut(s)	678
TaiI	ACGT	1 cut(s)	816
TaqI	TCGA	2 cut(s)	354, 627
TasI	AATT	5 cut(s)	26, 86, 260, 596, 688
TatI	WGTACW	1 cut(s)	252
Tru1I	TTAA	1 cut(s)	773
Tru9I	TTAA	1 cut(s)	773
TseFI	GTSAC	1 cut(s)	497
TseI	GCWGC	3 cut(s)	19, 412, 707
Tsp45I	GTSAC	1 cut(s)	497
TspDTI	ATGAA	4 cut(s)	417, 530, 706, 791
TspGWI	ACGGA	1 cut(s)	868
XapI	RAATTY	2 cut(s)	26, 596
XceI	RCATGY	1 cut(s)	667
XspI	CTAG	1 cut(s)	462

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.