Rh2DG439400

Inositol oxygenase 1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
OG0001948
Physical Location & Seq
Reverse (-)
63700279 .. 63704319
4041 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG439400.1

Sequence Viewer

Length: 693 bp
ATGAGAAAAGAGTACAGCAAATTGAACAGGGTGGAGATGAGCATATGGGAATGCTGTGAACTTCTCAATGAGGTTGTAGACGAGAGTGATCCAGACTTAGATGAACCTCAAATTGAGCACTTATTGCAAACAGCTGAAGCCATTAGAAAGGACTATCCCAATGAAGATTGGCTACACTTGACTGGCCTTATCCATGATCTTGGGAAGGTGCTTCTTCTTCCTTGCTTTGGGGAGCTTCCTCAATGGGCTGTTGTAGGTGACACTTTCCCAGTTGGTTGTGCTTTTGACGAGTCCATTGTTCACCACAAGTATTTCAAGGAGAATCCCGACTACAACAATCCGGCTTACAAGACTAAACATGGAGTTTACTCTGAGAAATGTGGACTTAACAACGTATTGATGTCATGGGGGCATGATGACTACATGTATCTGGTGGCCAAAGAAAATAAGACCACTCTACCTTCAGCAGCTCTTTTCGTCATTAGATACCACTCATTCTATGCTTTACACAGGGCAGGAGCCTACAAGCACTTGATGAATGAAGAGGATGTCGAAAACTTGAAGTGGCTTCATGTATTCAACAAGTATGACCTTTACAGCAAGAGCAAGGTTCGGGTTGATGTTGAGAAGGTGAAGCCGTACTATCTCTCTCTCATTGAAAAGTACTTCCCAGCTGCCAAGCTAAGATGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003824 GO:0008150 GO:0008152 GO:0016491 GO:0016701 GO:0050113 GO:0055114
KEGG Pathways
Metabolic & Signaling
ko00053 ko00562 map00053 map00562
Pfam Domains
Protein Families
MIOX

Protein Analysis

230

Amino Acids

27.02

Weight (kDa)

5.76

Isoelectric Point (pI)

41.78

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MIOX PF05153 1 - 230 3e-118 Myo-inositol oxygenase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 78
AclWI GGATC 1 cut(s) 83
AcoI YGGCCR 1 cut(s) 435
AcuI CTGAAG 2 cut(s) 156, 447
AfaI GTAC 3 cut(s) 14, 641, 665
AfiI CCNNNNNNNGG 1 cut(s) 227
AflIII ACRYGT 1 cut(s) 423
AgsI TTSAA 5 cut(s) 25, 316, 562, 580, 659
AluBI AGCT 5 cut(s) 134, 235, 470, 674, 682
AluI AGCT 5 cut(s) 134, 235, 470, 674, 682
Alw21I GWGCWC 1 cut(s) 120
AlwI GGATC 1 cut(s) 83
AoxI GGCC 2 cut(s) 184, 435
ApeKI GCWGC 2 cut(s) 467, 674
AsuHPI GGTGA 3 cut(s) 269, 293, 643
BalI TGGCCA 1 cut(s) 437
BarI GAAGNNNNNNTAC 2 cut(s) 156, 188
Bbv12I GWGCWC 1 cut(s) 120
BbvI GCAGC 2 cut(s) 479, 661
BccI CCATC 1 cut(s) 681
BceAI ACGGC 1 cut(s) 622
BisI GCNGC 2 cut(s) 468, 675
BlsI GCNGC 2 cut(s) 469, 676
BmcAI AGTACT 1 cut(s) 665
BmiI GGNNCC 1 cut(s) 520
BmrI ACTGGG 1 cut(s) 263
BmuI ACTGGG 1 cut(s) 263
Bsc4I CCNNNNNNNGG 1 cut(s) 227
Bse1I ACTGG 2 cut(s) 187, 269
BseGI GGATG 1 cut(s) 553
BseLI CCNNNNNNNGG 1 cut(s) 227
BseMII CTCAG 1 cut(s) 363
BseNI ACTGG 2 cut(s) 187, 269
BseXI GCAGC 2 cut(s) 479, 661
BseYI CCCAGC 1 cut(s) 670
BshFI GGCC 2 cut(s) 186, 437
BsiHKAI GWGCWC 1 cut(s) 120
BsiSI CCGG 1 cut(s) 341
BslI CCNNNNNNNGG 1 cut(s) 227
BsmI GAATGC 1 cut(s) 56
BsnI GGCC 2 cut(s) 186, 437
Bsp1286I GDGCHC 1 cut(s) 120
Bsp143I GATC 2 cut(s) 88, 196
BspANI GGCC 2 cut(s) 186, 437
BspCNI CTCAG 1 cut(s) 364
BspLI GGNNCC 1 cut(s) 520
BspPI GGATC 1 cut(s) 83
BsrI ACTGG 2 cut(s) 187, 269
BssMI GATC 2 cut(s) 88, 196
Bst6I CTCTTC 1 cut(s) 537
BstAPI GCANNNNNTGC 1 cut(s) 124
BstDEI CTNAG 3 cut(s) 97, 372, 683
BstF5I GGATG 1 cut(s) 553
BstKTI GATC 2 cut(s) 91, 199
BstMBI GATC 2 cut(s) 88, 196
BstMWI GCNNNNNNNGC 1 cut(s) 124
BstNSI RCATGY 1 cut(s) 427
BstV1I GCAGC 2 cut(s) 479, 661
BstXI CCANNNNNNTGG 1 cut(s) 200
BsuRI GGCC 2 cut(s) 186, 437
BtsCI GGATG 1 cut(s) 553
Csp6I GTAC 3 cut(s) 13, 640, 664
CviAII CATG 6 cut(s) 194, 359, 405, 413, 424, 572
CviQI GTAC 3 cut(s) 13, 640, 664
DdeI CTNAG 3 cut(s) 97, 372, 683
DpnI GATC 2 cut(s) 90, 198
DpnII GATC 2 cut(s) 88, 196
EaeI YGGCCR 1 cut(s) 435
Eam1104I CTCTTC 1 cut(s) 537
EarI CTCTTC 1 cut(s) 537
Eco57I CTGAAG 2 cut(s) 156, 447
FaeI CATG 6 cut(s) 197, 362, 408, 416, 427, 575
FatI CATG 6 cut(s) 193, 358, 404, 412, 423, 571
FauNDI CATATG 1 cut(s) 44
FblI GTMKAC 1 cut(s) 78
Fnu4HI GCNGC 2 cut(s) 468, 675
FokI GGATG 1 cut(s) 560
Fsp4HI GCNGC 2 cut(s) 468, 675
GluI GCNGC 2 cut(s) 468, 675
GsaI CCCAGC 1 cut(s) 674
HaeIII GGCC 2 cut(s) 186, 437
HapII CCGG 1 cut(s) 341
Hin1II CATG 6 cut(s) 197, 362, 408, 416, 427, 575
HinfI GANTC 2 cut(s) 290, 322
HpaII CCGG 1 cut(s) 341
HphI GGTGA 3 cut(s) 269, 293, 643
Hpy166II GTNNAC 5 cut(s) 59, 79, 301, 367, 383
Hpy188I TCNGA 1 cut(s) 373
Hpy188III TCNNGA 2 cut(s) 92, 326
Hpy8I GTNNAC 5 cut(s) 59, 79, 301, 367, 383
HpyAV CCTTC 3 cut(s) 199, 471, 622
HpyCH4IV ACGT 1 cut(s) 393
HpyCH4V TGCA 1 cut(s) 127
HpyF10VI GCNNNNNNNGC 1 cut(s) 124
HpyF3I CTNAG 3 cut(s) 97, 372, 683
HpySE526I ACGT 1 cut(s) 393
Hsp92II CATG 6 cut(s) 197, 362, 408, 416, 427, 575
Kzo9I GATC 2 cut(s) 88, 196
LmnI GCTCC 2 cut(s) 232, 518
LpnPI CCDG 9 cut(s) 13, 105, 168, 282, 354, 416, 496, 501, 684
Lsp1109I GCAGC 2 cut(s) 479, 661
MaeII ACGT 1 cut(s) 393
MaeIII GTNAC 1 cut(s) 257
MalI GATC 2 cut(s) 90, 198
MboI GATC 2 cut(s) 88, 196
MboII GAAGA 4 cut(s) 176, 206, 209, 554
MhlI GDGCHC 1 cut(s) 120
MlsI TGGCCA 1 cut(s) 437
MluCI AATT 2 cut(s) 20, 111
MluNI TGGCCA 1 cut(s) 437
MlyI GAGTC 1 cut(s) 299
MnlI CCTC 4 cut(s) 64, 117, 249, 538
Mox20I TGGCCA 1 cut(s) 437
MscI TGGCCA 1 cut(s) 437
MseI TTAA 1 cut(s) 387
Msp20I TGGCCA 1 cut(s) 437
MspA1I CMGCKG 2 cut(s) 134, 674
MspI CCGG 1 cut(s) 341
Mva1269I GAATGC 1 cut(s) 56
MwoI GCNNNNNNNGC 1 cut(s) 124
NdeI CATATG 1 cut(s) 44
NdeII GATC 2 cut(s) 88, 196
NlaIII CATG 6 cut(s) 197, 362, 408, 416, 427, 575
NlaIV GGNNCC 1 cut(s) 520
NmuCI GTSAC 1 cut(s) 257
NspI RCATGY 1 cut(s) 427
PciI ACATGT 1 cut(s) 423
PctI GAATGC 1 cut(s) 56
PfeI GAWTC 1 cut(s) 322
PkrI GCNGC 2 cut(s) 469, 676
PleI GAGTC 1 cut(s) 298
PpsI GAGTC 1 cut(s) 298
PscI ACATGT 1 cut(s) 423
PspFI CCCAGC 1 cut(s) 670
PspN4I GGNNCC 1 cut(s) 520
PvuII CAGCTG 2 cut(s) 134, 674
RsaI GTAC 3 cut(s) 14, 641, 665
RsaNI GTAC 3 cut(s) 13, 640, 664
SaqAI TTAA 1 cut(s) 387
SatI GCNGC 2 cut(s) 468, 675
Sau3AI GATC 2 cut(s) 88, 196
ScaI AGTACT 1 cut(s) 665
SchI GAGTC 1 cut(s) 299
SduI GDGCHC 1 cut(s) 120
Sse9I AATT 2 cut(s) 20, 111
TaiI ACGT 1 cut(s) 396
TaqI TCGA 1 cut(s) 552
TasI AATT 2 cut(s) 20, 111
TatI WGTACW 2 cut(s) 12, 663
TfiI GAWTC 1 cut(s) 322
Tru1I TTAA 1 cut(s) 387
Tru9I TTAA 1 cut(s) 387
TseFI GTSAC 1 cut(s) 257
TseI GCWGC 2 cut(s) 467, 674
Tsp45I GTSAC 1 cut(s) 257
TspDTI ATGAA 5 cut(s) 117, 177, 551, 555, 560
XceI RCATGY 1 cut(s) 427
XmiI GTMKAC 1 cut(s) 78
ZrmI AGTACT 1 cut(s) 665
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.