Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr17

Orthogroup ID

OG0001948

Physical Location & Seq

Genomic Coordinates Forward (+)

16418904 .. 16421663

Gene Structure 2760 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom17g18890.11

Sequence Viewer

CDS Protein Promoter (2k)

Length: 927 bp

ATGACTATCCGCATTGAGCAGCCCGAGTTTGGAGTTGAAGTTGAAATTGAAGCAGGGGAGAGAAAGGTGTTAAATGATGAAAAGGAATTGGCTTTAGATGCTGGATTTGTGGTGCCACATACCAATTCATTTGGACAAACATTTAGGGATTATGATGCAGAAGGAGAGAGACAACCAAGTGTTGAGAATTTCTACCAGATCAATCACATCAATCAGACTTATGATTTTGTGCAGAGAATGAGAAATGAGTATAGCAAATTGAACAGAGTGGAGATGAGCATTTGGGAATGCTGTGAACTTCTCAACGAGGTTGTCGACGAGAGCGATCCCGACTTGGACGAGCCTCAAATCGAGCACTTGTTGCAAACAGCTGAAGCCCTTAGGAAGGACTATCCTAATGAAGATTGGCTGCACTTGACTGGCCTCATCCATGACCTTGGAAAAGTGCTTCTTCTTCCTAGCTTTGGGGAGCTTCCTCAATGGGCAGTTGTCGGTGATACATTCCCTGTTGGCTGTGCTTTTGACCAATCCAATGTTCATCACAAGTACTTTGCGGAAAATCCTGACTACTATAATCCTACTTACAACACTAAGTATGGAGTTTACTCGGAGGGATGTGGACTCGAAAATGCTACGATGTCATGGGGGCACGATGATTACATGTATTTGGTGGCCAAAGAGAACAAATCAACTCTGCCTTCAGCAGCTCTGTTTATCATTAGATACCACTCATTCTATGCGTTACATAAGGCGGGAGCGTATAAGCACTTAATGAACGAAGAGGATGTCGAAAACCTGAAATGGCTCCGTGTATTCAACAAGTATGACCTTTACAGCAAGAGCAAGGTACGGGTTGACGTTGAGAAGGTGAAGCCATACTATATTTCTCTCATTGAAAAGTACTTTCCTTCGAAGCTAAGATGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0008150 GO:0008152 GO:0016491 GO:0016701 GO:0050113 GO:0055114

KEGG Pathways

Metabolic & Signaling

ko00053 ko00562 map00053 map00562

Pfam Domains

Protein Families

MIOX

Protein Analysis

309

Amino Acids

36.06

Weight (kDa)

4.94

Isoelectric Point (pI)

47.8

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001948)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G14520 AT1G14520 AT1G14520 AT1G14520
fragaria_vesca	FvH4_4g36370 FvH4_4g36370 FvH4_6g32720 FvH4_6g32720 FvH4_6g32720 FvH4_6g32720
malus_domestica	MD16G1007900.v1.1 MD17G1179500.v1.1 MD17G1179700.v1.1
prunus_persica	Prupe.1G343000_v2.0.a1 Prupe.1G343000_v2.0.a1 Prupe.1G343000_v2.0.a1 Prupe.3G055000_v2.0.a1 Prupe.3G055000_v2.0.a1 Prupe.3G055000_v2.0.a1
pyrus_communis	pycom16g00770 pycom17g18890
rosa_chinensis	RchiOBHm_Chr2g0141741 RchiOBHm_Chr4g0446111
rosa_laevigata	RLG00000005691 RLG00000019932
rosa_multiflora	Rmu_co8191254.1_g000001 Rmu_sc0002928.1_g000009 Rmu_sc0030751.1_g000001 Rmu_sc0035578.1_g000001
rosa_roxburghii	Rroxscaffold_2G00103910 Rroxscaffold_5G00386510
rosa_rugosa	Rorug02G0368400 Rorug02G0368500
rosa_samantha	Rh2AG420100 Rh2BG429500 Rh2BG431000 Rh2CG407300 Rh2DG439400 Rh2DG440700 Rh4AG429500 Rh4BG439000 Rh4CG456300 Rh4DG437400
rosa_wichuraiana	Rw2G034450 Rw4G036700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	112
AccI	GTMKAC	1 cut(s)	315
AciI	CCGC	3 cut(s)	10, 554, 752
AclWI	GGATC	1 cut(s)	320
AcoI	YGGCCR	1 cut(s)	672
AcsI	RAATTY	1 cut(s)	187
AcuI	CTGAAG	2 cut(s)	393, 684
AfaI	GTAC	3 cut(s)	548, 849, 902
AfiI	CCNNNNNNNGG	3 cut(s)	29, 385, 464
AflIII	ACRYGT	1 cut(s)	660
AgsI	TTSAA	6 cut(s)	38, 44, 50, 262, 817, 896
AjuI	GAANNNNNNNTTGG	2 cut(s)	519, 551
AluBI	AGCT	5 cut(s)	371, 462, 472, 707, 916
AluI	AGCT	5 cut(s)	371, 462, 472, 707, 916
Alw21I	GWGCWC	1 cut(s)	357
Alw26I	GTCTC	1 cut(s)	163
AlwI	GGATC	1 cut(s)	320
Ama87I	CYCGRG	1 cut(s)	23
AoxI	GGCC	2 cut(s)	421, 672
ApeKI	GCWGC	3 cut(s)	19, 409, 704
ApoI	RAATTY	1 cut(s)	187
ArsI	GACNNNNNNTTYG	2 cut(s)	771, 803
AsuHPI	GGTGA	2 cut(s)	506, 880
AsuII	TTCGAA	1 cut(s)	911
AvaI	CYCGRG	1 cut(s)	23
AxyI	CCTNAGG	1 cut(s)	380
BaeGI	GKGCMC	1 cut(s)	651
BalI	TGGCCA	1 cut(s)	674
BanI	GGYRCC	1 cut(s)	112
Bbv12I	GWGCWC	1 cut(s)	357
BbvI	GCAGC	3 cut(s)	31, 396, 716
BccI	CCATC	1 cut(s)	915
BcoDI	GTCTC	1 cut(s)	163
BfaI	CTAG	1 cut(s)	459
BisI	GCNGC	3 cut(s)	20, 410, 705
BlsI	GCNGC	3 cut(s)	21, 411, 706
BmcAI	AGTACT	2 cut(s)	548, 902
BmeT110I	CYCGRG	1 cut(s)	23
BmiI	GGNNCC	2 cut(s)	114, 806
BmsI	GCATC	2 cut(s)	88, 145
Bpu14I	TTCGAA	1 cut(s)	911
BsaJI	CCNNGG	1 cut(s)	436
BsaXI	ACNNNNNCTCC	2 cut(s)	24, 54
Bsc4I	CCNNNNNNNGG	3 cut(s)	29, 385, 464
Bse1I	ACTGG	1 cut(s)	424
Bse21I	CCTNAGG	1 cut(s)	380
BseDI	CCNNGG	1 cut(s)	436
BseGI	GGATG	3 cut(s)	426, 620, 790
BseLI	CCNNNNNNNGG	3 cut(s)	29, 385, 464
BseNI	ACTGG	1 cut(s)	424
BseSI	GKGCMC	1 cut(s)	651
BseXI	GCAGC	3 cut(s)	31, 396, 716
BsgI	GTGCAG	2 cut(s)	251, 395
BshFI	GGCC	2 cut(s)	423, 674
BshNI	GGYRCC	1 cut(s)	112
BsiHKAI	GWGCWC	1 cut(s)	357
BsiHKCI	CYCGRG	1 cut(s)	23
BslI	CCNNNNNNNGG	3 cut(s)	29, 385, 464
BsmAI	GTCTC	1 cut(s)	163
BsmI	GAATGC	1 cut(s)	293
BsnI	GGCC	2 cut(s)	423, 674
BsoBI	CYCGRG	1 cut(s)	23
Bsp119I	TTCGAA	1 cut(s)	911
Bsp1286I	GDGCHC	2 cut(s)	357, 651
Bsp143I	GATC	2 cut(s)	198, 325
BspACI	CCGC	3 cut(s)	10, 554, 752
BspANI	GGCC	2 cut(s)	423, 674
BspLI	GGNNCC	2 cut(s)	114, 806
BspPI	GGATC	1 cut(s)	320
BspT104I	TTCGAA	1 cut(s)	911
BspT107I	GGYRCC	1 cut(s)	112
BsrI	ACTGG	1 cut(s)	424
BssECI	CCNNGG	1 cut(s)	436
BssMI	GATC	2 cut(s)	198, 325
BssT1I	CCWWGG	1 cut(s)	436
Bst6I	CTCTTC	1 cut(s)	774
BstAPI	GCANNNNNTGC	1 cut(s)	361
BstBI	TTCGAA	1 cut(s)	911
BstDEI	CTNAG	3 cut(s)	380, 591, 917
BstENI	CCTNNNNNAGG	1 cut(s)	383
BstF5I	GGATG	3 cut(s)	426, 620, 790
BstKTI	GATC	2 cut(s)	201, 328
BstMAI	GTCTC	1 cut(s)	163
BstMBI	GATC	2 cut(s)	198, 325
BstMWI	GCNNNNNNNGC	2 cut(s)	98, 361
BstNSI	RCATGY	1 cut(s)	664
BstSLI	GKGCMC	1 cut(s)	651
BstV1I	GCAGC	3 cut(s)	31, 396, 716
BstXI	CCANNNNNNTGG	1 cut(s)	437
Bsu36I	CCTNAGG	1 cut(s)	380
BsuRI	GGCC	2 cut(s)	423, 674
BtsCI	GGATG	3 cut(s)	426, 620, 790
Csp6I	GTAC	3 cut(s)	547, 848, 901
CviAII	CATG	3 cut(s)	431, 642, 661
CviQI	GTAC	3 cut(s)	547, 848, 901
DdeI	CTNAG	3 cut(s)	380, 591, 917
DpnI	GATC	2 cut(s)	200, 327
DpnII	GATC	2 cut(s)	198, 325
EaeI	YGGCCR	1 cut(s)	672
Eam1104I	CTCTTC	1 cut(s)	774
EarI	CTCTTC	1 cut(s)	774
Eco130I	CCWWGG	1 cut(s)	436
Eco57I	CTGAAG	2 cut(s)	393, 684
Eco81I	CCTNAGG	1 cut(s)	380
Eco88I	CYCGRG	1 cut(s)	23
EcoNI	CCTNNNNNAGG	1 cut(s)	383
EcoT14I	CCWWGG	1 cut(s)	436
ErhI	CCWWGG	1 cut(s)	436
FaeI	CATG	3 cut(s)	434, 645, 664
FalI	AAGNNNNNCTT	2 cut(s)	435, 467
FatI	CATG	3 cut(s)	430, 641, 660
FauI	CCCGC	1 cut(s)	745
FblI	GTMKAC	1 cut(s)	315
Fnu4HI	GCNGC	3 cut(s)	20, 410, 705
FokI	GGATG	3 cut(s)	413, 627, 797
Fsp4HI	GCNGC	3 cut(s)	20, 410, 705
FspBI	CTAG	1 cut(s)	459
GluI	GCNGC	3 cut(s)	20, 410, 705
HaeIII	GGCC	2 cut(s)	423, 674
Hin1II	CATG	3 cut(s)	434, 645, 664
HincII	GTYRAC	2 cut(s)	316, 856
HindII	GTYRAC	2 cut(s)	316, 856
HinfI	GANTC	1 cut(s)	621
HphI	GGTGA	2 cut(s)	506, 880
Hpy166II	GTNNAC	5 cut(s)	296, 316, 604, 620, 856
Hpy188I	TCNGA	2 cut(s)	216, 610
Hpy188III	TCNNGA	2 cut(s)	329, 563
Hpy8I	GTNNAC	5 cut(s)	296, 316, 604, 620, 856
Hpy99I	CGWCG	1 cut(s)	320
HpyAV	CCTTC	5 cut(s)	155, 379, 708, 859, 918
HpyCH4IV	ACGT	1 cut(s)	858
HpyCH4V	TGCA	4 cut(s)	158, 232, 364, 412
HpyF10VI	GCNNNNNNNGC	2 cut(s)	98, 361
HpyF3I	CTNAG	3 cut(s)	380, 591, 917
HpySE526I	ACGT	1 cut(s)	858
Hsp92II	CATG	3 cut(s)	434, 645, 664
Kzo9I	GATC	2 cut(s)	198, 325
LmnI	GCTCC	3 cut(s)	469, 755, 810
LpnPI	CCDG	7 cut(s)	39, 87, 209, 405, 519, 576, 809
Lsp1109I	GCAGC	3 cut(s)	31, 396, 716
LweI	GCATC	2 cut(s)	88, 145
MaeI	CTAG	1 cut(s)	459
MaeII	ACGT	1 cut(s)	858
MaeIII	GTNAC	1 cut(s)	741
MalI	GATC	2 cut(s)	200, 327
MboI	GATC	2 cut(s)	198, 325
MboII	GAAGA	4 cut(s)	413, 443, 446, 791
MhlI	GDGCHC	2 cut(s)	357, 651
MlsI	TGGCCA	1 cut(s)	674
MluCI	AATT	5 cut(s)	45, 86, 124, 187, 257
MluNI	TGGCCA	1 cut(s)	674
MlyI	GAGTC	1 cut(s)	615
MnlI	CCTC	6 cut(s)	301, 354, 434, 486, 604, 775
Mox20I	TGGCCA	1 cut(s)	674
MscI	TGGCCA	1 cut(s)	674
MseI	TTAA	2 cut(s)	71, 770
Msp20I	TGGCCA	1 cut(s)	674
MspA1I	CMGCKG	1 cut(s)	371
Mva1269I	GAATGC	1 cut(s)	293
MwoI	GCNNNNNNNGC	2 cut(s)	98, 361
NdeII	GATC	2 cut(s)	198, 325
NlaIII	CATG	3 cut(s)	434, 645, 664
NlaIV	GGNNCC	2 cut(s)	114, 806
NspI	RCATGY	1 cut(s)	664
NspV	TTCGAA	1 cut(s)	911
PciI	ACATGT	1 cut(s)	660
PcsI	WCGNNNNNNNCGW	2 cut(s)	312, 321
PctI	GAATGC	1 cut(s)	293
PkrI	GCNGC	3 cut(s)	21, 411, 706
PleI	GAGTC	1 cut(s)	615
PpsI	GAGTC	1 cut(s)	615
PscI	ACATGT	1 cut(s)	660
PspN4I	GGNNCC	2 cut(s)	114, 806
PvuII	CAGCTG	1 cut(s)	371
RsaI	GTAC	3 cut(s)	548, 849, 902
RsaNI	GTAC	3 cut(s)	547, 848, 901
SalI	GTCGAC	1 cut(s)	314
SaqAI	TTAA	2 cut(s)	71, 770
SatI	GCNGC	3 cut(s)	20, 410, 705
Sau3AI	GATC	2 cut(s)	198, 325
ScaI	AGTACT	2 cut(s)	548, 902
SchI	GAGTC	1 cut(s)	615
SduI	GDGCHC	2 cut(s)	357, 651
SfaNI	GCATC	2 cut(s)	88, 145
SfuI	TTCGAA	1 cut(s)	911
Sse9I	AATT	5 cut(s)	45, 86, 124, 187, 257
SsiI	CCGC	3 cut(s)	10, 554, 752
SspMI	CTAG	1 cut(s)	459
StyI	CCWWGG	1 cut(s)	436
TaiI	ACGT	1 cut(s)	861
TaqI	TCGA	5 cut(s)	315, 351, 624, 789, 911
TasI	AATT	5 cut(s)	45, 86, 124, 187, 257
TatI	WGTACW	2 cut(s)	546, 900
Tru1I	TTAA	2 cut(s)	71, 770
Tru9I	TTAA	2 cut(s)	71, 770
TseI	GCWGC	3 cut(s)	19, 409, 704
TspDTI	ATGAA	5 cut(s)	93, 117, 414, 527, 788
TspGWI	ACGGA	1 cut(s)	797
XagI	CCTNNNNNAGG	1 cut(s)	383
XapI	RAATTY	1 cut(s)	187
XceI	RCATGY	1 cut(s)	664
XmiI	GTMKAC	1 cut(s)	315
XspI	CTAG	1 cut(s)	459
ZrmI	AGTACT	2 cut(s)	548, 902

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.