Rorug02G0368500

Inositol oxygenase 1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0001948
Physical Location & Seq
Forward (+)
47014217 .. 47016534
2318 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0368500.1

Sequence Viewer

Length: 513 bp
ATGGATATCCACACTCTTTCTAATGGTGCTGCTGATCTCGACAGCCTTAAGTGCTCTCTGGTGGAATCTTTGTTGGCGGAGACAGCGATTCTTGCTCACAAGTCTTTTCTTTTACTACTCTTGCTGGTTTGGTCTTCACCTAACAAAAAAAATGTGCTTCTGAATTCAGTGAGAACAGATCAGAGGTTTCCAATGTCCGAACTTAGTAAAGTGAAAGAGCCTGATGCTGAAAACAACGATGCAGGTGAAGCAGAGGATGACGATGACGATGACGAGGAGGACGAGGATAGTGATGATGATGATGAAGATGATGGTAATGACTCAGAAGAAGACAGTGATGATGATGAAGAGGATTCTGATGATGAGGTTGAGGCTACTGGTTACGGAGAAAGTGATGACGATGATGAGGATGAGGATGACGACAGTGACGAGGATGATGATAGTGACGAGGATGACGATGAAGATGAAGATGACGAAGAGCAATTCAAGTTACCTTCACAAAGAAAGAAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003824 GO:0008150 GO:0008152 GO:0016491 GO:0016701 GO:0050113 GO:0055114
KEGG Pathways
Metabolic & Signaling
ko00053 ko00562 map00053 map00562
Pfam Domains
Protein Families
MIOX

Protein Analysis

170

Amino Acids

19.05

Weight (kDa)

4.05

Isoelectric Point (pI)

51.82

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 233
Acc36I ACCTGC 1 cut(s) 233
AciI CCGC 1 cut(s) 77
AcsI RAATTY 1 cut(s) 163
AflII CTTAAG 1 cut(s) 47
AgsI TTSAA 1 cut(s) 487
Alw21I GWGCWC 1 cut(s) 56
Alw26I GTCTC 1 cut(s) 74
ApeKI GCWGC 1 cut(s) 29
ApoI RAATTY 1 cut(s) 163
AsuHPI GGTGA 2 cut(s) 129, 257
BbsI GAAGAC 2 cut(s) 126, 336
Bbv12I GWGCWC 1 cut(s) 56
BbvI GCAGC 1 cut(s) 16
BccI CCATC 1 cut(s) 305
BcoDI GTCTC 1 cut(s) 74
BfrI CTTAAG 1 cut(s) 47
BfuAI ACCTGC 1 cut(s) 233
BisI GCNGC 1 cut(s) 30
BlsI GCNGC 1 cut(s) 31
BmsI GCATC 2 cut(s) 214, 229
BpiI GAAGAC 2 cut(s) 126, 336
Bse1I ACTGG 1 cut(s) 382
BseGI GGATG 5 cut(s) 262, 415, 421, 439, 457
BseMII CTCAG 1 cut(s) 336
BseNI ACTGG 1 cut(s) 382
BseRI GAGGAG 1 cut(s) 290
BseXI GCAGC 1 cut(s) 16
BsiHKAI GWGCWC 1 cut(s) 56
BsmAI GTCTC 1 cut(s) 74
Bsp1286I GDGCHC 1 cut(s) 56
Bsp143I GATC 2 cut(s) 34, 178
BspACI CCGC 1 cut(s) 77
BspCNI CTCAG 1 cut(s) 335
BspMI ACCTGC 1 cut(s) 233
BspQI GCTCTTC 1 cut(s) 471
BspTI CTTAAG 1 cut(s) 47
BsrI ACTGG 1 cut(s) 382
BssMI GATC 2 cut(s) 34, 178
Bst4CI ACNGT 2 cut(s) 335, 425
Bst6I CTCTTC 2 cut(s) 342, 471
BstAFI CTTAAG 1 cut(s) 47
BstDEI CTNAG 2 cut(s) 203, 322
BstF5I GGATG 5 cut(s) 262, 415, 421, 439, 457
BstKTI GATC 2 cut(s) 37, 181
BstMAI GTCTC 1 cut(s) 74
BstMBI GATC 2 cut(s) 34, 178
BstMWI GCNNNNNNNGC 4 cut(s) 51, 83, 92, 248
BstV1I GCAGC 1 cut(s) 16
BstV2I GAAGAC 2 cut(s) 126, 336
BtsCI GGATG 5 cut(s) 262, 415, 421, 439, 457
BtsIMutI CAGTG 3 cut(s) 174, 340, 430
BveI ACCTGC 1 cut(s) 233
CviJI RGCY 3 cut(s) 45, 220, 374
CviKI_1 RGCY 3 cut(s) 45, 220, 374
DdeI CTNAG 2 cut(s) 203, 322
DpnI GATC 2 cut(s) 36, 180
DpnII GATC 2 cut(s) 34, 178
Eam1104I CTCTTC 2 cut(s) 342, 471
EarI CTCTTC 2 cut(s) 342, 471
EciI GGCGGA 1 cut(s) 92
Eco32I GATATC 1 cut(s) 7
EcoRI GAATTC 1 cut(s) 163
EcoRV GATATC 1 cut(s) 7
Fnu4HI GCNGC 1 cut(s) 30
FokI GGATG 5 cut(s) 269, 422, 428, 446, 464
Fsp4HI GCNGC 1 cut(s) 30
GluI GCNGC 1 cut(s) 30
HinfI GANTC 4 cut(s) 65, 88, 320, 353
HphI GGTGA 2 cut(s) 129, 257
Hpy188I TCNGA 5 cut(s) 162, 183, 199, 325, 358
Hpy188III TCNNGA 1 cut(s) 38
HpyAV CCTTC 1 cut(s) 504
HpyCH4III ACNGT 2 cut(s) 335, 425
HpyCH4V TGCA 1 cut(s) 242
HpyF10VI GCNNNNNNNGC 4 cut(s) 51, 83, 92, 248
HpyF3I CTNAG 2 cut(s) 203, 322
Kzo9I GATC 2 cut(s) 34, 178
LguI GCTCTTC 1 cut(s) 471
LpnPI CCDG 5 cut(s) 44, 110, 228, 234, 363
Lsp1109I GCAGC 1 cut(s) 16
LweI GCATC 2 cut(s) 214, 229
MaeIII GTNAC 4 cut(s) 380, 425, 443, 489
MalI GATC 2 cut(s) 36, 180
MboI GATC 2 cut(s) 34, 178
MboII GAAGA 8 cut(s) 126, 317, 338, 341, 359, 473, 479, 488
MhlI GDGCHC 1 cut(s) 56
MluCI AATT 2 cut(s) 163, 482
MlyI GAGTC 1 cut(s) 314
MseI TTAA 1 cut(s) 48
MspCI CTTAAG 1 cut(s) 47
MwoI GCNNNNNNNGC 4 cut(s) 51, 83, 92, 248
NdeII GATC 2 cut(s) 34, 178
NmuCI GTSAC 2 cut(s) 425, 443
PaqCI CACCTGC 1 cut(s) 233
PciSI GCTCTTC 1 cut(s) 471
PcsI WCGNNNNNNNCGW 3 cut(s) 279, 426, 453
PfeI GAWTC 3 cut(s) 65, 88, 353
PkrI GCNGC 1 cut(s) 31
PleI GAGTC 1 cut(s) 314
PpsI GAGTC 1 cut(s) 314
SapI GCTCTTC 1 cut(s) 471
SaqAI TTAA 1 cut(s) 48
SatI GCNGC 1 cut(s) 30
Sau3AI GATC 2 cut(s) 34, 178
SchI GAGTC 1 cut(s) 314
SduI GDGCHC 1 cut(s) 56
SetI ASST 5 cut(s) 142, 188, 247, 369, 496
SfaNI GCATC 2 cut(s) 214, 229
SmlI CTYRAG 1 cut(s) 47
SmoI CTYRAG 1 cut(s) 47
Sse9I AATT 2 cut(s) 163, 482
SsiI CCGC 1 cut(s) 77
TaaI ACNGT 2 cut(s) 335, 425
TaqI TCGA 1 cut(s) 39
TasI AATT 2 cut(s) 163, 482
TfiI GAWTC 3 cut(s) 65, 88, 353
Tru1I TTAA 1 cut(s) 48
Tru9I TTAA 1 cut(s) 48
TscAI CASTG 3 cut(s) 174, 340, 430
TseFI GTSAC 2 cut(s) 425, 443
TseI GCWGC 1 cut(s) 29
Tsp45I GTSAC 2 cut(s) 425, 443
TspDTI ATGAA 4 cut(s) 318, 360, 474, 480
TspGWI ACGGA 1 cut(s) 399
TspRI CASTG 3 cut(s) 174, 340, 430
Vha464I CTTAAG 1 cut(s) 47
XapI RAATTY 1 cut(s) 163
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.