Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0035578.1

Orthogroup ID

OG0001948

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 1283

Gene Structure 1283 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0035578.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 570 bp

ggattatgatgttaatagtgagcggagagatggggttggggaattctaccgaatccagcacatcaaccaaagtgttgattttgtgaagcggatgagagaagaatatggaaaattggacaaggtggaaatgagcatatgggaatgctgtgaacttttgaatgaagttgtggatgagagtgatcctgatttggatgagcctcagattgagcatctgctgcagactgctgaagctatcagaaaagactaccctaaagaaggctggctacatttgactgccctaatccatgatcttggaaaggtgcttcatcttcctgcttttggtgagcttcctcagtgggctgtcgtaggagacacatttcctgttgggtgtgcctttgatgagtcaattgttcaccacaagcatttccaggaaaatcctgactacagcaatcctgcttataacaccaaatatggaatttactctgaaggctgtggacttaacaatgtgctgatgtcatggggacacgacgactacatgttcttggtatacatattagccaaacctccctatttctccattgtgcatacact

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00053 ko00562 map00053 map00562

Pfam Domains

Protein Families

MIOX

Protein Analysis

190

Amino Acids

22.02

Weight (kDa)

4.74

Isoelectric Point (pI)

41.95

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001948)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G14520 AT1G14520 AT1G14520 AT1G14520
fragaria_vesca	FvH4_4g36370 FvH4_4g36370 FvH4_6g32720 FvH4_6g32720 FvH4_6g32720 FvH4_6g32720
malus_domestica	MD16G1007900.v1.1 MD17G1179500.v1.1 MD17G1179700.v1.1
prunus_persica	Prupe.1G343000_v2.0.a1 Prupe.1G343000_v2.0.a1 Prupe.1G343000_v2.0.a1 Prupe.3G055000_v2.0.a1 Prupe.3G055000_v2.0.a1 Prupe.3G055000_v2.0.a1
pyrus_communis	pycom16g00770 pycom17g18890
rosa_chinensis	RchiOBHm_Chr2g0141741 RchiOBHm_Chr4g0446111
rosa_laevigata	RLG00000005691 RLG00000019932
rosa_multiflora	Rmu_co8191254.1_g000001 Rmu_sc0002928.1_g000009 Rmu_sc0030751.1_g000001 Rmu_sc0035578.1_g000001
rosa_roxburghii	Rroxscaffold_2G00103910 Rroxscaffold_5G00386510
rosa_rugosa	Rorug02G0368400 Rorug02G0368500
rosa_samantha	Rh2AG420100 Rh2BG429500 Rh2BG431000 Rh2CG407300 Rh2DG439400 Rh2DG440700 Rh4AG429500 Rh4BG439000 Rh4CG456300 Rh4DG437400
rosa_wichuraiana	Rw2G034450 Rw4G036700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	439
AccBSI	CCGCTC	1 cut(s)	23
AccI	GTMKAC	1 cut(s)	526
AciI	CCGC	2 cut(s)	23, 89
AclWI	GGATC	1 cut(s)	174
AcsI	RAATTY	2 cut(s)	42, 454
AcuI	CTGAAG	2 cut(s)	247, 484
AfiI	CCNNNNNNNGG	2 cut(s)	255, 318
AflIII	ACRYGT	1 cut(s)	514
AgsI	TTSAA	1 cut(s)	158
AjnI	CCWGG	1 cut(s)	406
AluBI	AGCT	2 cut(s)	231, 326
AluI	AGCT	2 cut(s)	231, 326
Alw26I	GTCTC	1 cut(s)	343
AlwI	GGATC	1 cut(s)	174
ApeKI	GCWGC	1 cut(s)	215
ApoI	RAATTY	2 cut(s)	42, 454
AsuHPI	GGTGA	2 cut(s)	333, 384
BarI	GAAGNNNNNNTAC	2 cut(s)	247, 279
BbvI	GCAGC	1 cut(s)	202
BccI	CCATC	1 cut(s)	24
BciT130I	CCWGG	1 cut(s)	408
BcoDI	GTCTC	1 cut(s)	343
BfmI	CTRYAG	2 cut(s)	216, 422
BisI	GCNGC	1 cut(s)	216
BlsI	GCNGC	1 cut(s)	217
Bme1390I	CCNGG	1 cut(s)	408
BmrFI	CCNGG	1 cut(s)	408
BmsI	GCATC	1 cut(s)	218
Bsc4I	CCNNNNNNNGG	2 cut(s)	255, 318
BseBI	CCWGG	1 cut(s)	408
BseGI	GGATG	3 cut(s)	97, 176, 197
BseLI	CCNNNNNNNGG	2 cut(s)	255, 318
BseMII	CTCAG	2 cut(s)	213, 345
BseXI	GCAGC	1 cut(s)	202
BslFI	GGGAC	1 cut(s)	514
BslI	CCNNNNNNNGG	2 cut(s)	255, 318
BsmAI	GTCTC	1 cut(s)	343
BsmFI	GGGAC	1 cut(s)	514
BsmI	GAATGC	1 cut(s)	147
Bsp143I	GATC	2 cut(s)	179, 287
BspACI	CCGC	2 cut(s)	23, 89
BspCNI	CTCAG	2 cut(s)	212, 344
BspMAI	CTGCAG	1 cut(s)	220
BspPI	GGATC	1 cut(s)	174
BsrBI	CCGCTC	1 cut(s)	23
BssMI	GATC	2 cut(s)	179, 287
BssNAI	GTATAC	1 cut(s)	527
Bst1107I	GTATAC	1 cut(s)	527
Bst2UI	CCWGG	1 cut(s)	408
BstAPI	GCANNNNNTGC	1 cut(s)	215
BstC8I	GCNNGC	1 cut(s)	261
BstDEI	CTNAG	2 cut(s)	199, 331
BstENI	CCTNNNNNAGG	1 cut(s)	253
BstF5I	GGATG	3 cut(s)	97, 176, 197
BstKTI	GATC	2 cut(s)	182, 290
BstMAI	GTCTC	1 cut(s)	343
BstMBI	GATC	2 cut(s)	179, 287
BstMWI	GCNNNNNNNGC	1 cut(s)	215
BstNI	CCWGG	1 cut(s)	408
BstNSI	RCATGY	1 cut(s)	518
BstSCI	CCNGG	1 cut(s)	406
BstSFI	CTRYAG	2 cut(s)	216, 422
BstV1I	GCAGC	1 cut(s)	202
BstXI	CCANNNNNNTGG	1 cut(s)	291
BstZ17I	GTATAC	1 cut(s)	527
BtsCI	GGATG	3 cut(s)	97, 176, 197
BtsIMutI	CAGTG	1 cut(s)	339
Cac8I	GCNNGC	1 cut(s)	261
CviAII	CATG	3 cut(s)	285, 496, 515
CviJI	RGCY	8 cut(s)	197, 231, 259, 263, 326, 339, 469, 537
CviKI_1	RGCY	8 cut(s)	197, 231, 259, 263, 326, 339, 469, 537
DdeI	CTNAG	2 cut(s)	199, 331
DpnI	GATC	2 cut(s)	181, 289
DpnII	GATC	2 cut(s)	179, 287
Eco57I	CTGAAG	2 cut(s)	247, 484
EcoNI	CCTNNNNNAGG	1 cut(s)	253
EcoRI	GAATTC	1 cut(s)	42
EcoRII	CCWGG	1 cut(s)	406
FaeI	CATG	3 cut(s)	288, 499, 518
FaqI	GGGAC	1 cut(s)	514
FatI	CATG	3 cut(s)	284, 495, 514
FauNDI	CATATG	1 cut(s)	135
FblI	GTMKAC	1 cut(s)	526
Fnu4HI	GCNGC	1 cut(s)	216
FokI	GGATG	3 cut(s)	104, 183, 204
Fsp4HI	GCNGC	1 cut(s)	216
GluI	GCNGC	1 cut(s)	216
Hin1II	CATG	3 cut(s)	288, 499, 518
HinfI	GANTC	2 cut(s)	52, 381
HphI	GGTGA	2 cut(s)	333, 384
Hpy166II	GTNNAC	4 cut(s)	150, 392, 474, 527
Hpy188I	TCNGA	3 cut(s)	202, 237, 464
Hpy188III	TCNNGA	2 cut(s)	183, 417
Hpy8I	GTNNAC	4 cut(s)	150, 392, 474, 527
Hpy99I	CGWCG	1 cut(s)	510
HpyAV	CCTTC	2 cut(s)	249, 459
HpyCH4V	TGCA	2 cut(s)	218, 563
HpyF10VI	GCNNNNNNNGC	1 cut(s)	215
HpyF3I	CTNAG	2 cut(s)	199, 331
Hsp92II	CATG	3 cut(s)	288, 499, 518
Kzo9I	GATC	2 cut(s)	179, 287
LpnPI	CCDG	9 cut(s)	69, 196, 245, 325, 373, 393, 420, 430, 445
Lsp1109I	GCAGC	1 cut(s)	202
LweI	GCATC	1 cut(s)	218
MalI	GATC	2 cut(s)	181, 289
MbiI	CCGCTC	1 cut(s)	23
MboI	GATC	2 cut(s)	179, 287
MboII	GAAGA	2 cut(s)	111, 300
MfeI	CAATTG	1 cut(s)	385
MluCI	AATT	4 cut(s)	42, 111, 385, 454
MlyI	GAGTC	1 cut(s)	390
MnlI	CCTC	3 cut(s)	208, 340, 553
MseI	TTAA	2 cut(s)	13, 478
MspR9I	CCNGG	1 cut(s)	408
MunI	CAATTG	1 cut(s)	385
Mva1269I	GAATGC	1 cut(s)	147
MvaI	CCWGG	1 cut(s)	408
MwoI	GCNNNNNNNGC	1 cut(s)	215
NdeI	CATATG	1 cut(s)	135
NdeII	GATC	2 cut(s)	179, 287
NlaIII	CATG	3 cut(s)	288, 499, 518
NspI	RCATGY	1 cut(s)	518
PciI	ACATGT	1 cut(s)	514
PctI	GAATGC	1 cut(s)	147
PfeI	GAWTC	1 cut(s)	52
PfoI	TCCNGGA	1 cut(s)	406
PkrI	GCNGC	1 cut(s)	217
PleI	GAGTC	1 cut(s)	389
PpsI	GAGTC	1 cut(s)	389
PscI	ACATGT	1 cut(s)	514
PsiI	TTATAA	1 cut(s)	439
Psp6I	CCWGG	1 cut(s)	406
PspGI	CCWGG	1 cut(s)	406
PstI	CTGCAG	1 cut(s)	220
SaqAI	TTAA	2 cut(s)	13, 478
SatI	GCNGC	1 cut(s)	216
Sau3AI	GATC	2 cut(s)	179, 287
SchI	GAGTC	1 cut(s)	390
ScrFI	CCNGG	1 cut(s)	408
SetI	ASST	5 cut(s)	124, 233, 301, 328, 545
SfaNI	GCATC	1 cut(s)	218
SfcI	CTRYAG	2 cut(s)	216, 422
Sse9I	AATT	4 cut(s)	42, 111, 385, 454
SsiI	CCGC	2 cut(s)	23, 89
StyD4I	CCNGG	1 cut(s)	406
TasI	AATT	4 cut(s)	42, 111, 385, 454
TfiI	GAWTC	1 cut(s)	52
Tru1I	TTAA	2 cut(s)	13, 478
Tru9I	TTAA	2 cut(s)	13, 478
TscAI	CASTG	1 cut(s)	339
TseI	GCWGC	1 cut(s)	215
TspDTI	ATGAA	2 cut(s)	175, 294
TspRI	CASTG	1 cut(s)	339
XagI	CCTNNNNNAGG	1 cut(s)	253
XapI	RAATTY	2 cut(s)	42, 454
XceI	RCATGY	1 cut(s)	518
XmiI	GTMKAC	1 cut(s)	526

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.