Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002928.1

Orthogroup ID

OG0001948

Physical Location & Seq

Genomic Coordinates Reverse (-)

64654 .. 69838

Gene Structure 5185 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002928.1_g000009.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1179 bp

atgaccatcctcattgagcagcaggagcaccaacctgagtttggagttgaaggtggaggagggaaggaggttgttgtggatgaaaaagaattggtcttggatggtggatttttggtgccacataccaactcctttggacaaacttttagggattatgatgcagaaggtgagaggcaaccaagtgtggagaaattctacaagatcaatcacattaaccagacttatgacttcgtccagagaatgagaaaagagtacagcaaattgaacagggtggagatgagcatatgggaatgctgtgaacttctcaatgaggttgtagacgagagtgatccagacttagatgaacctcaaattgagcacttattgcaaacagctgaagccattagaaaggactatcccaatgaagattggctacacttgactggccttatccatgatcttgggaaggtgcttcttcttccttgctttggggagcttcctcaatgggctgttgtaggtgacactttcccagttggttgtgcttttgacgagtccattgttcaccacaagtatttcaaggagaatcccgactacaacaatccggcttacaagactaaacatggagtttactctgagaaatgtggacttaacaacgtattgatgtcatgggggcatgatgactacatgtatctggtggccaaagaaaataagaccactctaccttcagcagctcttttcgtcattagataccactcattctatgctttacacagggcgggagcctacaagcacttgatgaatgaagaggatgtcgaaaacttgaagtggcttcatgtattcaacaagtatgacctttacagcaagagcaaggttcgggttgatgttgagaaggtgaagccgtactatctctctctcattgaaaagtacttcccagctgccaagctaagatgcaagtttgctagcaagaattttgttagacaagaaatgtcagggggttctatgaggtttgctctggtgactctgttcatcttcgcaatggttctgtctccgattacaacatccgaggctgcacggttcacgtttctaaatacaactcccatatgtcctgcttgtgtttgctgcgtacctgcaccacggggctcttgctgcgattgttgtgccacaccgattgaacctcagtccgagcaaggggctccctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0008150 GO:0008152 GO:0016491 GO:0016701 GO:0050113 GO:0055114

KEGG Pathways

Metabolic & Signaling

ko00053 ko00562 map00053 map00562

Pfam Domains

Protein Families

MIOX

Protein Analysis

392

Amino Acids

44.83

Weight (kDa)

5.43

Isoelectric Point (pI)

47.6

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001948)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G14520 AT1G14520 AT1G14520 AT1G14520
fragaria_vesca	FvH4_4g36370 FvH4_4g36370 FvH4_6g32720 FvH4_6g32720 FvH4_6g32720 FvH4_6g32720
malus_domestica	MD16G1007900.v1.1 MD17G1179500.v1.1 MD17G1179700.v1.1
prunus_persica	Prupe.1G343000_v2.0.a1 Prupe.1G343000_v2.0.a1 Prupe.1G343000_v2.0.a1 Prupe.3G055000_v2.0.a1 Prupe.3G055000_v2.0.a1 Prupe.3G055000_v2.0.a1
pyrus_communis	pycom16g00770 pycom17g18890
rosa_chinensis	RchiOBHm_Chr2g0141741 RchiOBHm_Chr4g0446111
rosa_laevigata	RLG00000005691 RLG00000019932
rosa_multiflora	Rmu_co8191254.1_g000001 Rmu_sc0002928.1_g000009 Rmu_sc0030751.1_g000001 Rmu_sc0035578.1_g000001
rosa_roxburghii	Rroxscaffold_2G00103910 Rroxscaffold_5G00386510
rosa_rugosa	Rorug02G0368400 Rorug02G0368500
rosa_samantha	Rh2AG420100 Rh2BG429500 Rh2BG431000 Rh2CG407300 Rh2DG439400 Rh2DG440700 Rh4AG429500 Rh4BG439000 Rh4CG456300 Rh4DG437400
rosa_wichuraiana	Rw2G034450 Rw4G036700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	1114
AccB1I	GGYRCC	1 cut(s)	115
AccI	GTMKAC	1 cut(s)	318
AciI	CCGC	1 cut(s)	755
AclWI	GGATC	1 cut(s)	323
AcoI	YGGCCR	1 cut(s)	675
AcsI	RAATTY	2 cut(s)	191, 946
AcuI	CTGAAG	2 cut(s)	396, 687
AfaI	GTAC	4 cut(s)	254, 881, 905, 1104
AfiI	CCNNNNNNNGG	3 cut(s)	41, 467, 1167
AflIII	ACRYGT	1 cut(s)	663
AgsI	TTSAA	7 cut(s)	50, 265, 556, 802, 820, 899, 1151
AluBI	AGCT	5 cut(s)	374, 475, 710, 914, 922
AluI	AGCT	5 cut(s)	374, 475, 710, 914, 922
Alw21I	GWGCWC	2 cut(s)	30, 360
Alw26I	GTCTC	1 cut(s)	1029
AlwI	GGATC	1 cut(s)	323
AoxI	GGCC	2 cut(s)	424, 675
ApeKI	GCWGC	6 cut(s)	19, 707, 914, 1046, 1098, 1125
ApoI	RAATTY	2 cut(s)	191, 946
AsuHPI	GGTGA	5 cut(s)	179, 509, 533, 883, 1006
AsuNHI	GCTAGC	1 cut(s)	938
BalI	TGGCCA	1 cut(s)	677
BanI	GGYRCC	1 cut(s)	115
BanII	GRGCYC	2 cut(s)	1121, 1174
BarI	GAAGNNNNNNTAC	2 cut(s)	396, 428
Bbv12I	GWGCWC	2 cut(s)	30, 360
BbvI	GCAGC	6 cut(s)	31, 719, 901, 1033, 1085, 1112
BccI	CCATC	2 cut(s)	14, 95
BceAI	ACGGC	1 cut(s)	862
BcgI	CGANNNNNNTGC	2 cut(s)	1118, 1152
BcoDI	GTCTC	1 cut(s)	1029
BfaI	CTAG	1 cut(s)	939
BfuAI	ACCTGC	1 cut(s)	1114
BisI	GCNGC	6 cut(s)	20, 708, 915, 1047, 1099, 1126
BlsI	GCNGC	6 cut(s)	21, 709, 916, 1048, 1100, 1127
BmcAI	AGTACT	1 cut(s)	905
BmiI	GGNNCC	3 cut(s)	117, 760, 1173
BmrI	ACTGGG	1 cut(s)	503
BmsI	GCATC	2 cut(s)	148, 917
BmtI	GCTAGC	1 cut(s)	942
BmuI	ACTGGG	1 cut(s)	503
BplI	GAGNNNNNCTC	2 cut(s)	973, 1005
BsaJI	CCNNGG	2 cut(s)	1041, 1112
Bsc4I	CCNNNNNNNGG	3 cut(s)	41, 467, 1167
Bse1I	ACTGG	2 cut(s)	427, 509
Bse3DI	GCAATG	1 cut(s)	1020
BseDI	CCNNGG	2 cut(s)	1041, 1112
BseGI	GGATG	5 cut(s)	6, 85, 106, 793, 1037
BseLI	CCNNNNNNNGG	3 cut(s)	41, 467, 1167
BseMI	GCAATG	1 cut(s)	1020
BseMII	CTCAG	3 cut(s)	27, 603, 1169
BseNI	ACTGG	2 cut(s)	427, 509
BseRI	GAGGAG	1 cut(s)	72
BseXI	GCAGC	6 cut(s)	31, 719, 901, 1033, 1085, 1112
BseYI	CCCAGC	1 cut(s)	910
BsgI	GTGCAG	2 cut(s)	1032, 1092
BshFI	GGCC	2 cut(s)	426, 677
BshNI	GGYRCC	1 cut(s)	115
BsiHKAI	GWGCWC	2 cut(s)	30, 360
BsiSI	CCGG	1 cut(s)	581
BslI	CCNNNNNNNGG	3 cut(s)	41, 467, 1167
BsmAI	GTCTC	1 cut(s)	1029
BsmI	GAATGC	1 cut(s)	296
BsnI	GGCC	2 cut(s)	426, 677
Bsp1286I	GDGCHC	4 cut(s)	30, 360, 1121, 1174
Bsp143I	GATC	3 cut(s)	201, 328, 436
BspACI	CCGC	1 cut(s)	755
BspANI	GGCC	2 cut(s)	426, 677
BspCNI	CTCAG	3 cut(s)	28, 604, 1168
BspLI	GGNNCC	3 cut(s)	117, 760, 1173
BspMI	ACCTGC	1 cut(s)	1114
BspOI	GCTAGC	1 cut(s)	942
BspPI	GGATC	1 cut(s)	323
BspT107I	GGYRCC	1 cut(s)	115
BsrDI	GCAATG	1 cut(s)	1020
BsrI	ACTGG	2 cut(s)	427, 509
BssECI	CCNNGG	2 cut(s)	1041, 1112
BssMI	GATC	3 cut(s)	201, 328, 436
Bst4CI	ACNGT	1 cut(s)	1053
Bst6I	CTCTTC	1 cut(s)	777
BstAPI	GCANNNNNTGC	1 cut(s)	364
BstC8I	GCNNGC	1 cut(s)	940
BstDEI	CTNAG	5 cut(s)	36, 337, 612, 923, 1155
BstDSI	CCRYGG	1 cut(s)	1112
BstF5I	GGATG	5 cut(s)	6, 85, 106, 793, 1037
BstKTI	GATC	3 cut(s)	204, 331, 439
BstMAI	GTCTC	1 cut(s)	1029
BstMBI	GATC	3 cut(s)	201, 328, 436
BstMWI	GCNNNNNNNGC	3 cut(s)	25, 364, 1125
BstNSI	RCATGY	1 cut(s)	667
BstV1I	GCAGC	6 cut(s)	31, 719, 901, 1033, 1085, 1112
BstXI	CCANNNNNNTGG	1 cut(s)	440
BsuRI	GGCC	2 cut(s)	426, 677
BtgI	CCRYGG	1 cut(s)	1112
BtsCI	GGATG	5 cut(s)	6, 85, 106, 793, 1037
BveI	ACCTGC	1 cut(s)	1114
Cac8I	GCNNGC	1 cut(s)	940
Csp6I	GTAC	4 cut(s)	253, 880, 904, 1103
CspCI	CAANNNNNGTGG	2 cut(s)	1129, 1164
CviAII	CATG	6 cut(s)	434, 599, 645, 653, 664, 812
CviQI	GTAC	4 cut(s)	253, 880, 904, 1103
DdeI	CTNAG	5 cut(s)	36, 337, 612, 923, 1155
DpnI	GATC	3 cut(s)	203, 330, 438
DpnII	GATC	3 cut(s)	201, 328, 436
EaeI	YGGCCR	1 cut(s)	675
Eam1104I	CTCTTC	1 cut(s)	777
EarI	CTCTTC	1 cut(s)	777
Eco24I	GRGCYC	2 cut(s)	1121, 1174
Eco57I	CTGAAG	2 cut(s)	396, 687
EcoT38I	GRGCYC	2 cut(s)	1121, 1174
FaeI	CATG	6 cut(s)	437, 602, 648, 656, 667, 815
FatI	CATG	6 cut(s)	433, 598, 644, 652, 663, 811
FauI	CCCGC	1 cut(s)	748
FauNDI	CATATG	2 cut(s)	284, 1079
FblI	GTMKAC	1 cut(s)	318
Fnu4HI	GCNGC	6 cut(s)	20, 708, 915, 1047, 1099, 1126
FokI	GGATG	4 cut(s)	92, 113, 800, 1024
FriOI	GRGCYC	2 cut(s)	1121, 1174
Fsp4HI	GCNGC	6 cut(s)	20, 708, 915, 1047, 1099, 1126
FspBI	CTAG	1 cut(s)	939
GluI	GCNGC	6 cut(s)	20, 708, 915, 1047, 1099, 1126
GsaI	CCCAGC	1 cut(s)	914
HaeIII	GGCC	2 cut(s)	426, 677
HapII	CCGG	1 cut(s)	581
Hin1II	CATG	6 cut(s)	437, 602, 648, 656, 667, 815
HinfI	GANTC	3 cut(s)	530, 562, 997
HpaII	CCGG	1 cut(s)	581
HphI	GGTGA	5 cut(s)	179, 509, 533, 883, 1006
Hpy166II	GTNNAC	6 cut(s)	299, 319, 541, 607, 623, 1056
Hpy188I	TCNGA	4 cut(s)	613, 1029, 1042, 1162
Hpy188III	TCNNGA	3 cut(s)	235, 332, 566
Hpy8I	GTNNAC	6 cut(s)	299, 319, 541, 607, 623, 1056
HpyAV	CCTTC	6 cut(s)	44, 58, 158, 439, 711, 862
HpyCH4III	ACNGT	1 cut(s)	1053
HpyCH4IV	ACGT	2 cut(s)	633, 1058
HpyCH4V	TGCA	5 cut(s)	161, 367, 930, 1049, 1109
HpyF10VI	GCNNNNNNNGC	3 cut(s)	25, 364, 1125
HpyF3I	CTNAG	5 cut(s)	36, 337, 612, 923, 1155
HpySE526I	ACGT	2 cut(s)	633, 1058
Hsp92II	CATG	6 cut(s)	437, 602, 648, 656, 667, 815
Kzo9I	GATC	3 cut(s)	201, 328, 436
LmnI	GCTCC	4 cut(s)	25, 472, 758, 1177
Lsp1109I	GCAGC	6 cut(s)	31, 719, 901, 1033, 1085, 1112
LweI	GCATC	2 cut(s)	148, 917
MaeI	CTAG	1 cut(s)	939
MaeII	ACGT	2 cut(s)	633, 1058
MaeIII	GTNAC	2 cut(s)	497, 994
MalI	GATC	3 cut(s)	203, 330, 438
MboI	GATC	3 cut(s)	201, 328, 436
MboII	GAAGA	5 cut(s)	416, 446, 449, 794, 1000
MhlI	GDGCHC	4 cut(s)	30, 360, 1121, 1174
MlsI	TGGCCA	1 cut(s)	677
MluCI	AATT	5 cut(s)	89, 191, 260, 351, 946
MluNI	TGGCCA	1 cut(s)	677
MlyI	GAGTC	2 cut(s)	539, 991
Mox20I	TGGCCA	1 cut(s)	677
MscI	TGGCCA	1 cut(s)	677
MseI	TTAA	2 cut(s)	213, 627
Msp20I	TGGCCA	1 cut(s)	677
MspA1I	CMGCKG	2 cut(s)	374, 914
MspI	CCGG	1 cut(s)	581
Mva1269I	GAATGC	1 cut(s)	296
MwoI	GCNNNNNNNGC	3 cut(s)	25, 364, 1125
NdeI	CATATG	2 cut(s)	284, 1079
NdeII	GATC	3 cut(s)	201, 328, 436
NheI	GCTAGC	1 cut(s)	938
NlaIII	CATG	6 cut(s)	437, 602, 648, 656, 667, 815
NlaIV	GGNNCC	3 cut(s)	117, 760, 1173
NmuCI	GTSAC	2 cut(s)	497, 994
NspI	RCATGY	1 cut(s)	667
PciI	ACATGT	1 cut(s)	663
PctI	GAATGC	1 cut(s)	296
PfeI	GAWTC	1 cut(s)	562
PflFI	GACNNNGTC	1 cut(s)	230
PkrI	GCNGC	6 cut(s)	21, 709, 916, 1048, 1100, 1127
PleI	GAGTC	2 cut(s)	538, 991
PpsI	GAGTC	2 cut(s)	538, 991
PscI	ACATGT	1 cut(s)	663
PspFI	CCCAGC	1 cut(s)	910
PspN4I	GGNNCC	3 cut(s)	117, 760, 1173
PsyI	GACNNNGTC	1 cut(s)	230
PvuII	CAGCTG	2 cut(s)	374, 914
RsaI	GTAC	4 cut(s)	254, 881, 905, 1104
RsaNI	GTAC	4 cut(s)	253, 880, 904, 1103
SaqAI	TTAA	2 cut(s)	213, 627
SatI	GCNGC	6 cut(s)	20, 708, 915, 1047, 1099, 1126
Sau3AI	GATC	3 cut(s)	201, 328, 436
ScaI	AGTACT	1 cut(s)	905
SchI	GAGTC	2 cut(s)	539, 991
SduI	GDGCHC	4 cut(s)	30, 360, 1121, 1174
SfaNI	GCATC	2 cut(s)	148, 917
Sse9I	AATT	5 cut(s)	89, 191, 260, 351, 946
SsiI	CCGC	1 cut(s)	755
SspMI	CTAG	1 cut(s)	939
TaaI	ACNGT	1 cut(s)	1053
TaiI	ACGT	2 cut(s)	636, 1061
TaqI	TCGA	1 cut(s)	792
TasI	AATT	5 cut(s)	89, 191, 260, 351, 946
TatI	WGTACW	2 cut(s)	252, 903
TfiI	GAWTC	1 cut(s)	562
Tru1I	TTAA	2 cut(s)	213, 627
Tru9I	TTAA	2 cut(s)	213, 627
TseFI	GTSAC	2 cut(s)	497, 994
TseI	GCWGC	6 cut(s)	19, 707, 914, 1046, 1098, 1125
Tsp45I	GTSAC	2 cut(s)	497, 994
TspDTI	ATGAA	7 cut(s)	96, 357, 417, 791, 795, 800, 994
Tth111I	GACNNNGTC	1 cut(s)	230
XapI	RAATTY	2 cut(s)	191, 946
XceI	RCATGY	1 cut(s)	667
XcmI	CCANNNNNNNNNTGG	1 cut(s)	38
XmiI	GTMKAC	1 cut(s)	318
XspI	CTAG	1 cut(s)	939
ZrmI	AGTACT	1 cut(s)	905

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.