RchiOBHm_Chr2g0141741

Inositol oxygenase 1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0001948
Physical Location & Seq
Reverse (-)
59284129 .. 59288264
4136 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ51199

Sequence Viewer

Length: 933 bp
ATGACCATCCTCATTGAGCAGCAGGAGCACCAACCTGAGTTTGGAGTTGAAGGTGGAGGAGGGAAGGAGGTTGTTGTGGATGAAAAAGAATTGGTCTTGGATGGTGGATTTTTGGTGCCACATACCAACTCCTTTGGACAAACTTTTAGGGATTATGATGCAGAAGGTGAGAGGCAACCAAGTGTGGAGAAATTCTACAAGATCAATCACATTAACCAGACTTATGACTTCGTCCAGAGAATGAGAAAAGAGTACAGCAAATTGAACAGGGTGGAGATGAGCATATGGGAATGCTGTGAACTTCTCAATGAGGTTGTAGACGAGAGTGATCCAGACTTAGATGAACCTCAAATTGAGCACTTATTGCAAACAGCTGAAGCCATTAGAAAGGACTATCCCAATGAAGATTGGCTACACTTGACTGGCCTTATCCATGATCTTGGGAAGGTGCTTCTTCTTCCTTGCTTTGGGGAGCTTCCTCAATGGGCTGTTGTAGGTGACACTTTCCCAGTTGGTTGTGCTTTTGACGAGTCCATTGTTCACCACAAGTATTTCAAGGAGAATCCCGACTACAACAATCCGGCTTACAAGACTAAACATGGAGTTTACTCTGAGAAATGTGGACTTAACAACGTATTGATGTCATGGGGGCATGATGACTACATGTATCTGGTGGCCAAAGAAAATAAGACCACTCTACCTTCAGCAGCTCTTTTCGTCATTAGATACCACTCATTCTATGCTTTACACAGGGCAGGAGCCTACAAGCACTTGATGAATGAAGAGGATGTCGAAAACTTGAAGTGGCTTCATGTATTCAACAAGTATGACCTTTACAGCAAGAGCAAGGTTCGGGTTGATGTTGAGAAGGTGAAGCCGTACTATCTCTCTCTCATTGAAAAGTACTTCCCAGCTGCCAAGCTAAGATGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003824 GO:0008150 GO:0008152 GO:0016491 GO:0016701 GO:0050113 GO:0055114
KEGG Pathways
Metabolic & Signaling
ko00053 ko00562 map00053 map00562
Pfam Domains
Protein Families
MIOX

Protein Analysis

310

Amino Acids

36.18

Weight (kDa)

5.32

Isoelectric Point (pI)

44.31

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MIOX PF05153 61 - 310 1.4e-126 Myo-inositol oxygenase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 115
AccI GTMKAC 1 cut(s) 318
AclWI GGATC 1 cut(s) 323
AcoI YGGCCR 1 cut(s) 675
AcsI RAATTY 1 cut(s) 191
AcuI CTGAAG 2 cut(s) 396, 687
AfaI GTAC 3 cut(s) 254, 881, 905
AfiI CCNNNNNNNGG 2 cut(s) 41, 467
AflIII ACRYGT 1 cut(s) 663
AgsI TTSAA 6 cut(s) 50, 265, 556, 802, 820, 899
AluBI AGCT 5 cut(s) 374, 475, 710, 914, 922
AluI AGCT 5 cut(s) 374, 475, 710, 914, 922
Alw21I GWGCWC 2 cut(s) 30, 360
AlwI GGATC 1 cut(s) 323
AoxI GGCC 2 cut(s) 424, 675
ApeKI GCWGC 3 cut(s) 19, 707, 914
ApoI RAATTY 1 cut(s) 191
AsuHPI GGTGA 4 cut(s) 179, 509, 533, 883
BalI TGGCCA 1 cut(s) 677
BanI GGYRCC 1 cut(s) 115
BarI GAAGNNNNNNTAC 2 cut(s) 396, 428
Bbv12I GWGCWC 2 cut(s) 30, 360
BbvI GCAGC 3 cut(s) 31, 719, 901
BccI CCATC 3 cut(s) 14, 95, 921
BceAI ACGGC 1 cut(s) 862
BisI GCNGC 3 cut(s) 20, 708, 915
BlsI GCNGC 3 cut(s) 21, 709, 916
BmcAI AGTACT 1 cut(s) 905
BmiI GGNNCC 2 cut(s) 117, 760
BmrI ACTGGG 1 cut(s) 503
BmsI GCATC 1 cut(s) 148
BmuI ACTGGG 1 cut(s) 503
Bsc4I CCNNNNNNNGG 2 cut(s) 41, 467
Bse1I ACTGG 2 cut(s) 427, 509
BseGI GGATG 4 cut(s) 6, 85, 106, 793
BseLI CCNNNNNNNGG 2 cut(s) 41, 467
BseMII CTCAG 2 cut(s) 27, 603
BseNI ACTGG 2 cut(s) 427, 509
BseRI GAGGAG 1 cut(s) 72
BseXI GCAGC 3 cut(s) 31, 719, 901
BseYI CCCAGC 1 cut(s) 910
BshFI GGCC 2 cut(s) 426, 677
BshNI GGYRCC 1 cut(s) 115
BsiHKAI GWGCWC 2 cut(s) 30, 360
BsiSI CCGG 1 cut(s) 581
BslI CCNNNNNNNGG 2 cut(s) 41, 467
BsmI GAATGC 1 cut(s) 296
BsnI GGCC 2 cut(s) 426, 677
Bsp1286I GDGCHC 2 cut(s) 30, 360
Bsp143I GATC 3 cut(s) 201, 328, 436
BspANI GGCC 2 cut(s) 426, 677
BspCNI CTCAG 2 cut(s) 28, 604
BspLI GGNNCC 2 cut(s) 117, 760
BspPI GGATC 1 cut(s) 323
BspT107I GGYRCC 1 cut(s) 115
BsrI ACTGG 2 cut(s) 427, 509
BssMI GATC 3 cut(s) 201, 328, 436
Bst6I CTCTTC 1 cut(s) 777
BstAPI GCANNNNNTGC 1 cut(s) 364
BstDEI CTNAG 4 cut(s) 36, 337, 612, 923
BstF5I GGATG 4 cut(s) 6, 85, 106, 793
BstKTI GATC 3 cut(s) 204, 331, 439
BstMBI GATC 3 cut(s) 201, 328, 436
BstMWI GCNNNNNNNGC 2 cut(s) 25, 364
BstNSI RCATGY 1 cut(s) 667
BstV1I GCAGC 3 cut(s) 31, 719, 901
BstXI CCANNNNNNTGG 1 cut(s) 440
BsuRI GGCC 2 cut(s) 426, 677
BtsCI GGATG 4 cut(s) 6, 85, 106, 793
Csp6I GTAC 3 cut(s) 253, 880, 904
CviAII CATG 6 cut(s) 434, 599, 645, 653, 664, 812
CviQI GTAC 3 cut(s) 253, 880, 904
DdeI CTNAG 4 cut(s) 36, 337, 612, 923
DpnI GATC 3 cut(s) 203, 330, 438
DpnII GATC 3 cut(s) 201, 328, 436
EaeI YGGCCR 1 cut(s) 675
Eam1104I CTCTTC 1 cut(s) 777
EarI CTCTTC 1 cut(s) 777
Eco57I CTGAAG 2 cut(s) 396, 687
FaeI CATG 6 cut(s) 437, 602, 648, 656, 667, 815
FatI CATG 6 cut(s) 433, 598, 644, 652, 663, 811
FauNDI CATATG 1 cut(s) 284
FblI GTMKAC 1 cut(s) 318
Fnu4HI GCNGC 3 cut(s) 20, 708, 915
FokI GGATG 3 cut(s) 92, 113, 800
Fsp4HI GCNGC 3 cut(s) 20, 708, 915
GluI GCNGC 3 cut(s) 20, 708, 915
GsaI CCCAGC 1 cut(s) 914
HaeIII GGCC 2 cut(s) 426, 677
HapII CCGG 1 cut(s) 581
Hin1II CATG 6 cut(s) 437, 602, 648, 656, 667, 815
HinfI GANTC 2 cut(s) 530, 562
HpaII CCGG 1 cut(s) 581
HphI GGTGA 4 cut(s) 179, 509, 533, 883
Hpy166II GTNNAC 5 cut(s) 299, 319, 541, 607, 623
Hpy188I TCNGA 1 cut(s) 613
Hpy188III TCNNGA 3 cut(s) 235, 332, 566
Hpy8I GTNNAC 5 cut(s) 299, 319, 541, 607, 623
HpyAV CCTTC 6 cut(s) 44, 58, 158, 439, 711, 862
HpyCH4IV ACGT 1 cut(s) 633
HpyCH4V TGCA 2 cut(s) 161, 367
HpyF10VI GCNNNNNNNGC 2 cut(s) 25, 364
HpyF3I CTNAG 4 cut(s) 36, 337, 612, 923
HpySE526I ACGT 1 cut(s) 633
Hsp92II CATG 6 cut(s) 437, 602, 648, 656, 667, 815
Kzo9I GATC 3 cut(s) 201, 328, 436
LmnI GCTCC 3 cut(s) 25, 472, 758
Lsp1109I GCAGC 3 cut(s) 31, 719, 901
LweI GCATC 1 cut(s) 148
MaeII ACGT 1 cut(s) 633
MaeIII GTNAC 1 cut(s) 497
MalI GATC 3 cut(s) 203, 330, 438
MboI GATC 3 cut(s) 201, 328, 436
MboII GAAGA 4 cut(s) 416, 446, 449, 794
MhlI GDGCHC 2 cut(s) 30, 360
MlsI TGGCCA 1 cut(s) 677
MluCI AATT 4 cut(s) 89, 191, 260, 351
MluNI TGGCCA 1 cut(s) 677
MlyI GAGTC 1 cut(s) 539
MnlI CCTC 9 cut(s) 20, 50, 53, 61, 165, 304, 357, 489, 778
Mox20I TGGCCA 1 cut(s) 677
MscI TGGCCA 1 cut(s) 677
MseI TTAA 2 cut(s) 213, 627
Msp20I TGGCCA 1 cut(s) 677
MspA1I CMGCKG 2 cut(s) 374, 914
MspI CCGG 1 cut(s) 581
Mva1269I GAATGC 1 cut(s) 296
MwoI GCNNNNNNNGC 2 cut(s) 25, 364
NdeI CATATG 1 cut(s) 284
NdeII GATC 3 cut(s) 201, 328, 436
NlaIII CATG 6 cut(s) 437, 602, 648, 656, 667, 815
NlaIV GGNNCC 2 cut(s) 117, 760
NmuCI GTSAC 1 cut(s) 497
NspI RCATGY 1 cut(s) 667
PciI ACATGT 1 cut(s) 663
PctI GAATGC 1 cut(s) 296
PfeI GAWTC 1 cut(s) 562
PflFI GACNNNGTC 1 cut(s) 230
PkrI GCNGC 3 cut(s) 21, 709, 916
PleI GAGTC 1 cut(s) 538
PpsI GAGTC 1 cut(s) 538
PscI ACATGT 1 cut(s) 663
PspFI CCCAGC 1 cut(s) 910
PspN4I GGNNCC 2 cut(s) 117, 760
PsyI GACNNNGTC 1 cut(s) 230
PvuII CAGCTG 2 cut(s) 374, 914
RsaI GTAC 3 cut(s) 254, 881, 905
RsaNI GTAC 3 cut(s) 253, 880, 904
SaqAI TTAA 2 cut(s) 213, 627
SatI GCNGC 3 cut(s) 20, 708, 915
Sau3AI GATC 3 cut(s) 201, 328, 436
ScaI AGTACT 1 cut(s) 905
SchI GAGTC 1 cut(s) 539
SduI GDGCHC 2 cut(s) 30, 360
SfaNI GCATC 1 cut(s) 148
Sse9I AATT 4 cut(s) 89, 191, 260, 351
TaiI ACGT 1 cut(s) 636
TaqI TCGA 1 cut(s) 792
TasI AATT 4 cut(s) 89, 191, 260, 351
TatI WGTACW 2 cut(s) 252, 903
TfiI GAWTC 1 cut(s) 562
Tru1I TTAA 2 cut(s) 213, 627
Tru9I TTAA 2 cut(s) 213, 627
TseFI GTSAC 1 cut(s) 497
TseI GCWGC 3 cut(s) 19, 707, 914
Tsp45I GTSAC 1 cut(s) 497
TspDTI ATGAA 6 cut(s) 96, 357, 417, 791, 795, 800
Tth111I GACNNNGTC 1 cut(s) 230
XapI RAATTY 1 cut(s) 191
XceI RCATGY 1 cut(s) 667
XcmI CCANNNNNNNNNTGG 1 cut(s) 38
XmiI GTMKAC 1 cut(s) 318
ZrmI AGTACT 1 cut(s) 905
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.