Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0030751.1

Orthogroup ID

OG0001948

Physical Location & Seq

Genomic Coordinates Forward (+)

143 .. 2090

Gene Structure 1948 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0030751.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 741 bp

atgacgatcctcatcgagcagccggaatttgttgaggtggaggaggagaaggtttgttccgaagagaatgagaatgaactggtgttggatggtggatttgtggtgccgacgaccaacgcatttggccacacttttagggattatgatgttaatagtgagcggagagatggggttggggaattctaccgaatccagcacatcaaccaaagtgttgattttgtgaagcggatgagagaagaatatggaaaattggacaaggtggaaatgagcatatgggaatgctgtgaacttttgaatgaagttgtggatgagagtgatcctgatttggatgagcctcagattgagcatctgctgcagactgctgaagctatcagaaaagactaccctaaagaaggctggttacatttgactgccctaatccatgatcttggaaaggtgcttcatcttcctgcttttggtgagcttcctcagtgggctgtcgtaggagacacatttcctgttgggtgtgcctttgatgagtcaattgttcaccacaagcatttccaggaaaatcctgactacagcaatcctgcttataacaccaaatatggaatttactctgaaggctgtggacttaacaatgtgctgatgtcatggggacacgacgactacatgttcttggtatacatattagccaaacctccctatttctccattgtgcatacacttccatccacctacttagaaagtagaaggaaatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00053 ko00562 map00053 map00562

Pfam Domains

Protein Families

MIOX

Protein Analysis

246

Amino Acids

28.45

Weight (kDa)

4.64

Isoelectric Point (pI)

50.15

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001948)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G14520 AT1G14520 AT1G14520 AT1G14520
fragaria_vesca	FvH4_4g36370 FvH4_4g36370 FvH4_6g32720 FvH4_6g32720 FvH4_6g32720 FvH4_6g32720
malus_domestica	MD16G1007900.v1.1 MD17G1179500.v1.1 MD17G1179700.v1.1
prunus_persica	Prupe.1G343000_v2.0.a1 Prupe.1G343000_v2.0.a1 Prupe.1G343000_v2.0.a1 Prupe.3G055000_v2.0.a1 Prupe.3G055000_v2.0.a1 Prupe.3G055000_v2.0.a1
pyrus_communis	pycom16g00770 pycom17g18890
rosa_chinensis	RchiOBHm_Chr2g0141741 RchiOBHm_Chr4g0446111
rosa_laevigata	RLG00000005691 RLG00000019932
rosa_multiflora	Rmu_co8191254.1_g000001 Rmu_sc0002928.1_g000009 Rmu_sc0030751.1_g000001 Rmu_sc0035578.1_g000001
rosa_roxburghii	Rroxscaffold_2G00103910 Rroxscaffold_5G00386510
rosa_rugosa	Rorug02G0368400 Rorug02G0368500
rosa_samantha	Rh2AG420100 Rh2BG429500 Rh2BG431000 Rh2CG407300 Rh2DG439400 Rh2DG440700 Rh4AG429500 Rh4BG439000 Rh4CG456300 Rh4DG437400
rosa_wichuraiana	Rw2G034450 Rw4G036700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	576
AccB1I	GGYRCC	1 cut(s)	103
AccBSI	CCGCTC	1 cut(s)	160
AccI	GTMKAC	1 cut(s)	663
AciI	CCGC	2 cut(s)	160, 226
AclWI	GGATC	1 cut(s)	311
AcoI	YGGCCR	1 cut(s)	124
AcsI	RAATTY	3 cut(s)	26, 179, 591
AcuI	CTGAAG	2 cut(s)	384, 621
AfiI	CCNNNNNNNGG	2 cut(s)	392, 455
AflIII	ACRYGT	1 cut(s)	651
AgsI	TTSAA	1 cut(s)	295
AjnI	CCWGG	1 cut(s)	543
AluBI	AGCT	2 cut(s)	368, 463
AluI	AGCT	2 cut(s)	368, 463
Alw26I	GTCTC	1 cut(s)	480
AlwI	GGATC	1 cut(s)	311
AoxI	GGCC	1 cut(s)	124
ApeKI	GCWGC	2 cut(s)	19, 352
ApoI	RAATTY	3 cut(s)	26, 179, 591
AsuHPI	GGTGA	2 cut(s)	470, 521
BalI	TGGCCA	1 cut(s)	126
BanI	GGYRCC	1 cut(s)	103
BarI	GAAGNNNNNNTAC	2 cut(s)	384, 416
BbvI	GCAGC	2 cut(s)	31, 339
BccI	CCATC	3 cut(s)	83, 161, 718
BciT130I	CCWGG	1 cut(s)	545
BcoDI	GTCTC	1 cut(s)	480
BfmI	CTRYAG	2 cut(s)	353, 559
BisI	GCNGC	2 cut(s)	20, 353
BlsI	GCNGC	2 cut(s)	21, 354
Bme1390I	CCNGG	1 cut(s)	545
BmiI	GGNNCC	1 cut(s)	105
BmrFI	CCNGG	1 cut(s)	545
BmsI	GCATC	1 cut(s)	355
BsaBI	GATNNNNATC	1 cut(s)	11
Bsc4I	CCNNNNNNNGG	2 cut(s)	392, 455
Bse1I	ACTGG	1 cut(s)	84
Bse8I	GATNNNNATC	1 cut(s)	11
BseBI	CCWGG	1 cut(s)	545
BseGI	GGATG	5 cut(s)	94, 234, 313, 334, 710
BseJI	GATNNNNATC	1 cut(s)	11
BseLI	CCNNNNNNNGG	2 cut(s)	392, 455
BseMII	CTCAG	2 cut(s)	350, 482
BseNI	ACTGG	1 cut(s)	84
BseRI	GAGGAG	2 cut(s)	56, 59
BseXI	GCAGC	2 cut(s)	31, 339
BshFI	GGCC	1 cut(s)	126
BshNI	GGYRCC	1 cut(s)	103
BsiSI	CCGG	1 cut(s)	23
BslFI	GGGAC	1 cut(s)	651
BslI	CCNNNNNNNGG	2 cut(s)	392, 455
BsmAI	GTCTC	1 cut(s)	480
BsmFI	GGGAC	1 cut(s)	651
BsmI	GAATGC	1 cut(s)	284
BsnI	GGCC	1 cut(s)	126
Bsp143I	GATC	3 cut(s)	6, 316, 424
BspACI	CCGC	2 cut(s)	160, 226
BspANI	GGCC	1 cut(s)	126
BspCNI	CTCAG	2 cut(s)	349, 481
BspLI	GGNNCC	1 cut(s)	105
BspMAI	CTGCAG	1 cut(s)	357
BspPI	GGATC	1 cut(s)	311
BspT107I	GGYRCC	1 cut(s)	103
BsrBI	CCGCTC	1 cut(s)	160
BsrI	ACTGG	1 cut(s)	84
BssMI	GATC	3 cut(s)	6, 316, 424
BssNAI	GTATAC	1 cut(s)	664
Bst1107I	GTATAC	1 cut(s)	664
Bst2UI	CCWGG	1 cut(s)	545
Bst6I	CTCTTC	1 cut(s)	57
BstAPI	GCANNNNNTGC	1 cut(s)	352
BstDEI	CTNAG	3 cut(s)	336, 468, 721
BstENI	CCTNNNNNAGG	1 cut(s)	390
BstF5I	GGATG	5 cut(s)	94, 234, 313, 334, 710
BstKTI	GATC	3 cut(s)	9, 319, 427
BstMAI	GTCTC	1 cut(s)	480
BstMBI	GATC	3 cut(s)	6, 316, 424
BstMWI	GCNNNNNNNGC	1 cut(s)	352
BstNI	CCWGG	1 cut(s)	545
BstNSI	RCATGY	1 cut(s)	655
BstSCI	CCNGG	1 cut(s)	543
BstSFI	CTRYAG	2 cut(s)	353, 559
BstV1I	GCAGC	2 cut(s)	31, 339
BstXI	CCANNNNNNTGG	1 cut(s)	428
BstZ17I	GTATAC	1 cut(s)	664
BsuRI	GGCC	1 cut(s)	126
BtsCI	GGATG	5 cut(s)	94, 234, 313, 334, 710
BtsIMutI	CAGTG	1 cut(s)	476
CviAII	CATG	3 cut(s)	422, 633, 652
CviJI	RGCY	9 cut(s)	22, 126, 334, 368, 396, 463, 476, 606, 674
CviKI_1	RGCY	9 cut(s)	22, 126, 334, 368, 396, 463, 476, 606, 674
DdeI	CTNAG	3 cut(s)	336, 468, 721
DpnI	GATC	3 cut(s)	8, 318, 426
DpnII	GATC	3 cut(s)	6, 316, 424
EaeI	YGGCCR	1 cut(s)	124
Eam1104I	CTCTTC	1 cut(s)	57
EarI	CTCTTC	1 cut(s)	57
Eco57I	CTGAAG	2 cut(s)	384, 621
EcoNI	CCTNNNNNAGG	1 cut(s)	390
EcoRI	GAATTC	1 cut(s)	179
EcoRII	CCWGG	1 cut(s)	543
FaeI	CATG	3 cut(s)	425, 636, 655
FaqI	GGGAC	1 cut(s)	651
FatI	CATG	3 cut(s)	421, 632, 651
FauNDI	CATATG	1 cut(s)	272
FblI	GTMKAC	1 cut(s)	663
Fnu4HI	GCNGC	2 cut(s)	20, 353
FokI	GGATG	5 cut(s)	101, 241, 320, 341, 697
Fsp4HI	GCNGC	2 cut(s)	20, 353
GluI	GCNGC	2 cut(s)	20, 353
HaeIII	GGCC	1 cut(s)	126
HapII	CCGG	1 cut(s)	23
Hin1II	CATG	3 cut(s)	425, 636, 655
HinfI	GANTC	2 cut(s)	189, 518
HpaII	CCGG	1 cut(s)	23
HphI	GGTGA	2 cut(s)	470, 521
Hpy166II	GTNNAC	4 cut(s)	287, 529, 611, 664
Hpy188I	TCNGA	4 cut(s)	61, 339, 374, 601
Hpy188III	TCNNGA	2 cut(s)	320, 554
Hpy8I	GTNNAC	4 cut(s)	287, 529, 611, 664
Hpy99I	CGWCG	2 cut(s)	112, 647
HpyAV	CCTTC	4 cut(s)	43, 386, 596, 726
HpyCH4V	TGCA	2 cut(s)	355, 700
HpyF10VI	GCNNNNNNNGC	1 cut(s)	352
HpyF3I	CTNAG	3 cut(s)	336, 468, 721
Hsp92II	CATG	3 cut(s)	425, 636, 655
Kzo9I	GATC	3 cut(s)	6, 316, 424
Lsp1109I	GCAGC	2 cut(s)	31, 339
LweI	GCATC	1 cut(s)	355
MaeIII	GTNAC	1 cut(s)	399
MalI	GATC	3 cut(s)	8, 318, 426
MbiI	CCGCTC	1 cut(s)	160
MboI	GATC	3 cut(s)	6, 316, 424
MboII	GAAGA	3 cut(s)	74, 248, 437
MfeI	CAATTG	1 cut(s)	522
MlsI	TGGCCA	1 cut(s)	126
MluCI	AATT	5 cut(s)	26, 179, 248, 522, 591
MluNI	TGGCCA	1 cut(s)	126
MlyI	GAGTC	1 cut(s)	527
MmeI	TCCRAC	1 cut(s)	66
MnlI	CCTC	7 cut(s)	20, 28, 34, 37, 345, 477, 690
Mox20I	TGGCCA	1 cut(s)	126
MscI	TGGCCA	1 cut(s)	126
MseI	TTAA	2 cut(s)	150, 615
Msp20I	TGGCCA	1 cut(s)	126
MspI	CCGG	1 cut(s)	23
MspR9I	CCNGG	1 cut(s)	545
MunI	CAATTG	1 cut(s)	522
Mva1269I	GAATGC	1 cut(s)	284
MvaI	CCWGG	1 cut(s)	545
MwoI	GCNNNNNNNGC	1 cut(s)	352
NdeI	CATATG	1 cut(s)	272
NdeII	GATC	3 cut(s)	6, 316, 424
NlaIII	CATG	3 cut(s)	425, 636, 655
NlaIV	GGNNCC	1 cut(s)	105
NspI	RCATGY	1 cut(s)	655
PciI	ACATGT	1 cut(s)	651
PctI	GAATGC	1 cut(s)	284
PfeI	GAWTC	1 cut(s)	189
PfoI	TCCNGGA	1 cut(s)	543
PkrI	GCNGC	2 cut(s)	21, 354
PleI	GAGTC	1 cut(s)	526
PpsI	GAGTC	1 cut(s)	526
PscI	ACATGT	1 cut(s)	651
PsiI	TTATAA	1 cut(s)	576
Psp6I	CCWGG	1 cut(s)	543
PspGI	CCWGG	1 cut(s)	543
PspN4I	GGNNCC	1 cut(s)	105
PstI	CTGCAG	1 cut(s)	357
SaqAI	TTAA	2 cut(s)	150, 615
SatI	GCNGC	2 cut(s)	20, 353
Sau3AI	GATC	3 cut(s)	6, 316, 424
SchI	GAGTC	1 cut(s)	527
ScrFI	CCNGG	1 cut(s)	545
SetI	ASST	8 cut(s)	39, 54, 261, 370, 438, 465, 682, 719
SfaNI	GCATC	1 cut(s)	355
SfcI	CTRYAG	2 cut(s)	353, 559
Sse9I	AATT	5 cut(s)	26, 179, 248, 522, 591
SsiI	CCGC	2 cut(s)	160, 226
StyD4I	CCNGG	1 cut(s)	543
TaqI	TCGA	1 cut(s)	15
TasI	AATT	5 cut(s)	26, 179, 248, 522, 591
TfiI	GAWTC	1 cut(s)	189
Tru1I	TTAA	2 cut(s)	150, 615
Tru9I	TTAA	2 cut(s)	150, 615
TscAI	CASTG	1 cut(s)	476
TseI	GCWGC	2 cut(s)	19, 352
TspDTI	ATGAA	3 cut(s)	90, 312, 431
TspRI	CASTG	1 cut(s)	476
XagI	CCTNNNNNAGG	1 cut(s)	390
XapI	RAATTY	3 cut(s)	26, 179, 591
XceI	RCATGY	1 cut(s)	655
XmiI	GTMKAC	1 cut(s)	663

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.