Rh4BG439000

Myo-inositol oxygenase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4B
OG0001948
Physical Location & Seq
Forward (+)
57990040 .. 57993156
3117 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4BG439000.1

Sequence Viewer

Length: 690 bp
ATGAGACAAGAATATGGAAAATTGGGAAAGGTGGAAATGAGCATATGGGAGTGCTGTGAACTTTTGAATGAAGTTGTGGATGAGAGTGATCCTGATTTGGATGAGCCTCAGATTGAGCATCTGCTGCAGACTGCTGAAGCTATCCGAAAAGACTACCCTAAAGAAGGCTGGCTACATTTGACTGCCCTAATCCATGATCTTGGAAAGGTGCTTCATCTTCCTGCTTTTGGTGAGCTTCCTCAGTGGGCTGTCGTAGGAGACACATTTCCTGTTGGGTGTGCCTTTGATGAGTCAATTGTTCACCACAAGCATTTCCAGGAAAATCCTGACTACAGCAATCCTGCTTATAACACCAAATATGGAATTTACTCTGAAGGCTGTGGACTTAACAATGTTCTGATGTCATGGGGACACGATGACTACATGTACTTGGTGGCCAAAGGGAATAACTCTACTCTTCCTTCAGCTGGTCTTTTCATCATCAGATACCATTCATTTTATGCTTTACACAGGGCAGGGGCATATAAGCACTTGATGAATGAAGATGACATTGAGAATTTGAAGTGGCTCAAAGTGTTCAACAAGTATGACCTTTACAGTAAGAGCAAAGTTCGCATTGATGTTGAGAAAGTCAAGCCCTACTATCTCTCTTTAATTGAGAAGTACTTTCCTGCAAAGTTGAGATGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00053 ko00562 map00053 map00562
Pfam Domains
Protein Families
MIOX

Protein Analysis

229

Amino Acids

26.61

Weight (kDa)

5.64

Isoelectric Point (pI)

42.71

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MIOX PF05153 1 - 229 5.5e-117 Myo-inositol oxygenase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 348
AclWI GGATC 1 cut(s) 83
AcoI YGGCCR 1 cut(s) 435
AcsI RAATTY 2 cut(s) 363, 556
AcuI CTGAAG 3 cut(s) 156, 393, 447
AfaI GTAC 2 cut(s) 428, 665
AfiI CCNNNNNNNGG 3 cut(s) 164, 227, 467
AflIII ACRYGT 1 cut(s) 423
AgsI TTSAA 3 cut(s) 67, 562, 580
AjnI CCWGG 1 cut(s) 315
AluBI AGCT 3 cut(s) 140, 235, 467
AluI AGCT 3 cut(s) 140, 235, 467
Alw26I GTCTC 1 cut(s) 252
AlwI GGATC 1 cut(s) 83
AoxI GGCC 1 cut(s) 435
ApeKI GCWGC 1 cut(s) 124
ApoI RAATTY 2 cut(s) 363, 556
AsuHPI GGTGA 2 cut(s) 242, 293
BalI TGGCCA 1 cut(s) 437
BarI GAAGNNNNNNTAC 2 cut(s) 156, 188
BbvI GCAGC 1 cut(s) 111
BccI CCATC 1 cut(s) 678
BciT130I CCWGG 1 cut(s) 317
BcoDI GTCTC 1 cut(s) 252
BfmI CTRYAG 2 cut(s) 125, 331
BisI GCNGC 1 cut(s) 125
BlsI GCNGC 1 cut(s) 126
BmcAI AGTACT 1 cut(s) 665
Bme1390I CCNGG 1 cut(s) 317
BmrFI CCNGG 1 cut(s) 317
BmsI GCATC 1 cut(s) 127
Bsc4I CCNNNNNNNGG 3 cut(s) 164, 227, 467
BseBI CCWGG 1 cut(s) 317
BseGI GGATG 2 cut(s) 85, 106
BseLI CCNNNNNNNGG 3 cut(s) 164, 227, 467
BseMII CTCAG 2 cut(s) 122, 254
BseXI GCAGC 1 cut(s) 111
BshFI GGCC 1 cut(s) 437
BslFI GGGAC 1 cut(s) 423
BslI CCNNNNNNNGG 3 cut(s) 164, 227, 467
BsmAI GTCTC 1 cut(s) 252
BsmFI GGGAC 1 cut(s) 423
BsnI GGCC 1 cut(s) 437
Bsp143I GATC 2 cut(s) 88, 196
BspANI GGCC 1 cut(s) 437
BspCNI CTCAG 2 cut(s) 121, 253
BspMAI CTGCAG 1 cut(s) 129
BspPI GGATC 1 cut(s) 83
BssMI GATC 2 cut(s) 88, 196
Bst2UI CCWGG 1 cut(s) 317
Bst4CI ACNGT 1 cut(s) 599
Bst6I CTCTTC 1 cut(s) 462
BstAPI GCANNNNNTGC 1 cut(s) 124
BstC8I GCNNGC 1 cut(s) 170
BstDEI CTNAG 2 cut(s) 108, 240
BstENI CCTNNNNNAGG 1 cut(s) 162
BstF5I GGATG 2 cut(s) 85, 106
BstKTI GATC 2 cut(s) 91, 199
BstMAI GTCTC 1 cut(s) 252
BstMBI GATC 2 cut(s) 88, 196
BstMWI GCNNNNNNNGC 2 cut(s) 124, 612
BstNI CCWGG 1 cut(s) 317
BstNSI RCATGY 1 cut(s) 427
BstSCI CCNGG 1 cut(s) 315
BstSFI CTRYAG 2 cut(s) 125, 331
BstV1I GCAGC 1 cut(s) 111
BstXI CCANNNNNNTGG 1 cut(s) 200
BsuRI GGCC 1 cut(s) 437
BtsCI GGATG 2 cut(s) 85, 106
BtsIMutI CAGTG 1 cut(s) 248
Cac8I GCNNGC 1 cut(s) 170
Csp6I GTAC 2 cut(s) 427, 664
CviAII CATG 3 cut(s) 194, 405, 424
CviQI GTAC 2 cut(s) 427, 664
DdeI CTNAG 2 cut(s) 108, 240
DpnI GATC 2 cut(s) 90, 198
DpnII GATC 2 cut(s) 88, 196
EaeI YGGCCR 1 cut(s) 435
Eam1104I CTCTTC 1 cut(s) 462
EarI CTCTTC 1 cut(s) 462
Eco57I CTGAAG 3 cut(s) 156, 393, 447
EcoNI CCTNNNNNAGG 1 cut(s) 162
EcoRII CCWGG 1 cut(s) 315
FaeI CATG 3 cut(s) 197, 408, 427
FaqI GGGAC 1 cut(s) 423
FatI CATG 3 cut(s) 193, 404, 423
FauNDI CATATG 1 cut(s) 44
Fnu4HI GCNGC 1 cut(s) 125
FokI GGATG 2 cut(s) 92, 113
Fsp4HI GCNGC 1 cut(s) 125
GluI GCNGC 1 cut(s) 125
HaeIII GGCC 1 cut(s) 437
Hin1II CATG 3 cut(s) 197, 408, 427
HinfI GANTC 1 cut(s) 290
HphI GGTGA 2 cut(s) 242, 293
Hpy166II GTNNAC 3 cut(s) 59, 301, 383
Hpy188I TCNGA 5 cut(s) 111, 146, 373, 399, 485
Hpy188III TCNNGA 2 cut(s) 92, 326
Hpy8I GTNNAC 3 cut(s) 59, 301, 383
HpyAV CCTTC 3 cut(s) 158, 368, 471
HpyCH4III ACNGT 1 cut(s) 599
HpyCH4V TGCA 2 cut(s) 127, 674
HpyF10VI GCNNNNNNNGC 2 cut(s) 124, 612
HpyF3I CTNAG 2 cut(s) 108, 240
Hsp92II CATG 3 cut(s) 197, 408, 427
Kzo9I GATC 2 cut(s) 88, 196
Lsp1109I GCAGC 1 cut(s) 111
LweI GCATC 1 cut(s) 127
MalI GATC 2 cut(s) 90, 198
MboI GATC 2 cut(s) 88, 196
MboII GAAGA 3 cut(s) 209, 449, 554
MfeI CAATTG 1 cut(s) 294
MlsI TGGCCA 1 cut(s) 437
MluCI AATT 5 cut(s) 20, 294, 363, 556, 654
MluNI TGGCCA 1 cut(s) 437
MlyI GAGTC 1 cut(s) 299
MnlI CCTC 2 cut(s) 117, 249
Mox20I TGGCCA 1 cut(s) 437
MscI TGGCCA 1 cut(s) 437
MseI TTAA 2 cut(s) 387, 653
Msp20I TGGCCA 1 cut(s) 437
MspA1I CMGCKG 1 cut(s) 467
MspR9I CCNGG 1 cut(s) 317
MunI CAATTG 1 cut(s) 294
MvaI CCWGG 1 cut(s) 317
MwoI GCNNNNNNNGC 2 cut(s) 124, 612
NdeI CATATG 1 cut(s) 44
NdeII GATC 2 cut(s) 88, 196
NlaIII CATG 3 cut(s) 197, 408, 427
NspI RCATGY 1 cut(s) 427
PciI ACATGT 1 cut(s) 423
PfoI TCCNGGA 1 cut(s) 315
PkrI GCNGC 1 cut(s) 126
PleI GAGTC 1 cut(s) 298
PpsI GAGTC 1 cut(s) 298
PscI ACATGT 1 cut(s) 423
PsiI TTATAA 1 cut(s) 348
Psp6I CCWGG 1 cut(s) 315
PspGI CCWGG 1 cut(s) 315
PstI CTGCAG 1 cut(s) 129
PvuII CAGCTG 1 cut(s) 467
RsaI GTAC 2 cut(s) 428, 665
RsaNI GTAC 2 cut(s) 427, 664
SaqAI TTAA 2 cut(s) 387, 653
SatI GCNGC 1 cut(s) 125
Sau3AI GATC 2 cut(s) 88, 196
ScaI AGTACT 1 cut(s) 665
SchI GAGTC 1 cut(s) 299
ScrFI CCNGG 1 cut(s) 317
SetI ASST 6 cut(s) 33, 142, 210, 237, 469, 594
SfaNI GCATC 1 cut(s) 127
SfcI CTRYAG 2 cut(s) 125, 331
Sse9I AATT 5 cut(s) 20, 294, 363, 556, 654
StyD4I CCNGG 1 cut(s) 315
TaaI ACNGT 1 cut(s) 599
TasI AATT 5 cut(s) 20, 294, 363, 556, 654
TatI WGTACW 2 cut(s) 426, 663
Tru1I TTAA 2 cut(s) 387, 653
Tru9I TTAA 2 cut(s) 387, 653
TscAI CASTG 1 cut(s) 248
TseI GCWGC 1 cut(s) 124
TspDTI ATGAA 6 cut(s) 84, 203, 466, 483, 551, 555
TspRI CASTG 1 cut(s) 248
XagI CCTNNNNNAGG 1 cut(s) 162
XapI RAATTY 2 cut(s) 363, 556
XceI RCATGY 1 cut(s) 427
ZrmI AGTACT 1 cut(s) 665
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.