Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0001948

Physical Location & Seq

Genomic Coordinates Forward (+)

61053575 .. 61143846

Gene Structure 90272 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG431000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 951 bp

ATGACCATCCTCATTGAGCAGCAGGAGCACCAACCTGAGTTTGGAGTTGAAGGTGGAGGAGGGAAGGAGGTTGTTGTGGATGAAAAGGAATTGATCTTGGATGGTGGATTTTTGGTGCTGCATACCAACTCCTTTGGACAAACTTTTAGGGATTATGATGCAGAAGGTGAGAGGCAACCAAGTGTGGAGAAATTCTACAAGATCAATCACATTAACCAGACTTATGACTTCGTCCAGAGAATGAGAAAAGAGTACAGCAAATTGAACAGGGTGGAGATGAGCATATGGGAATGCTGTGAACTTCTCAATGAGGTTGTAGACGAGAGTGATCCAGACTTGGACGAACCTCAAATTGAGCACTTATTGCAAACAGCTGAAGCCATTAGAAAGGACTATCCCAATGAAGATTGGCTACACTTGACTGGCCTTATCCATGCTAAAACGTTGCCGGTGCTTCTCTTCTACTTCACTAGCAGTCGATTCCCCACTACCCAAAAGTCTGGTCTTGATGTGGCTGACACGCAAGCTGTTCGTCTTCCCACTACTATGCTCTCTGGAATTCCGTTTATATCAGCAATAGAGTTGAGGCCTCTTTACGACCCAAGTTATTCAGCTGAAGAGGGGTCAATGGCACTTGTCTCACGGTTCGACACCGGTCAATCAGCACCTTTAGCAGGATACAGGTATAACGACGACGTTCATGATCGCTGGTGGTACCCTTATTCTATTGTCATGAGCACTGCTGCAACACCGAAAAATGAAAATGCTTCCTTGTATATTGGGTGGACTCCCCCTGATAGCAGTACCGAATACTATGTCTACATGCACGTCGCTGAAGTTGAAAATCTCCTAGCCAACCAATCTAGAATCTTGAGCATTACTTGGAATGGAAAGCCCTTCTATGGTCCTTTTACTCTAGCATACTTATCCTCATTTTCCGTATTCACCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0008150 GO:0008152 GO:0016491 GO:0016701 GO:0050113 GO:0055114

KEGG Pathways

Metabolic & Signaling

ko00053 ko00562 map00053 map00562

Pfam Domains

Protein Families

MIOX

Protein Analysis

316

Amino Acids

36.12

Weight (kDa)

4.65

Isoelectric Point (pI)

50.35

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MIOX	PF05153	61 - 155	4e-38	Myo-inositol oxygenase
Malectin_like	PF12819	185 - 242	4e-13	Malectin-like domain
Malectin_like	PF12819	242 - 314	2.8e-15	Malectin-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001948)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G14520 AT1G14520 AT1G14520 AT1G14520
fragaria_vesca	FvH4_4g36370 FvH4_4g36370 FvH4_6g32720 FvH4_6g32720 FvH4_6g32720 FvH4_6g32720
malus_domestica	MD16G1007900.v1.1 MD17G1179500.v1.1 MD17G1179700.v1.1
prunus_persica	Prupe.1G343000_v2.0.a1 Prupe.1G343000_v2.0.a1 Prupe.1G343000_v2.0.a1 Prupe.3G055000_v2.0.a1 Prupe.3G055000_v2.0.a1 Prupe.3G055000_v2.0.a1
pyrus_communis	pycom16g00770 pycom17g18890
rosa_chinensis	RchiOBHm_Chr2g0141741 RchiOBHm_Chr4g0446111
rosa_laevigata	RLG00000005691 RLG00000019932
rosa_multiflora	Rmu_co8191254.1_g000001 Rmu_sc0002928.1_g000009 Rmu_sc0030751.1_g000001 Rmu_sc0035578.1_g000001
rosa_roxburghii	Rroxscaffold_2G00103910 Rroxscaffold_5G00386510
rosa_rugosa	Rorug02G0368400 Rorug02G0368500
rosa_samantha	Rh2AG420100 Rh2BG429500 Rh2BG431000 Rh2CG407300 Rh2DG439400 Rh2DG440700 Rh4AG429500 Rh4BG439000 Rh4CG456300 Rh4DG437400
rosa_wichuraiana	Rw2G034450 Rw4G036700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	714
AccB1I	GGYRCC	1 cut(s)	714
AccI	GTMKAC	2 cut(s)	318, 819
AclI	AACGTT	1 cut(s)	443
AclWI	GGATC	1 cut(s)	323
AcsI	RAATTY	2 cut(s)	191, 558
AcuI	CTGAAG	3 cut(s)	396, 636, 855
AfaI	GTAC	3 cut(s)	254, 716, 805
AfiI	CCNNNNNNNGG	3 cut(s)	41, 674, 902
AgeI	ACCGGT	1 cut(s)	653
AgsI	TTSAA	3 cut(s)	50, 265, 842
AjiI	CACGTC	1 cut(s)	829
AluBI	AGCT	3 cut(s)	374, 527, 614
AluI	AGCT	3 cut(s)	374, 527, 614
Alw21I	GWGCWC	3 cut(s)	30, 360, 740
Alw26I	GTCTC	1 cut(s)	643
AlwI	GGATC	1 cut(s)	323
AoxI	GGCC	2 cut(s)	424, 587
ApeKI	GCWGC	3 cut(s)	19, 118, 743
ApoI	RAATTY	2 cut(s)	191, 558
ArsI	GACNNNNNNTTYG	4 cut(s)	487, 519, 801, 833
AsiGI	ACCGGT	1 cut(s)	653
Asp718I	GGTACC	1 cut(s)	714
AspS9I	GGNCC	1 cut(s)	905
AsuHPI	GGTGA	2 cut(s)	179, 937
AvaII	GGWCC	1 cut(s)	905
BanI	GGYRCC	1 cut(s)	714
BarI	GAAGNNNNNNTAC	2 cut(s)	396, 428
BbsI	GAAGAC	1 cut(s)	527
Bbv12I	GWGCWC	3 cut(s)	30, 360, 740
BbvI	GCAGC	3 cut(s)	31, 105, 730
BccI	CCATC	2 cut(s)	14, 95
BcgI	CGANNNNNNTGC	2 cut(s)	512, 546
BciVI	GTATCC	1 cut(s)	671
BcoDI	GTCTC	1 cut(s)	643
BfaI	CTAG	4 cut(s)	471, 851, 864, 917
BfuI	GTATCC	1 cut(s)	671
BisI	GCNGC	3 cut(s)	20, 119, 744
BlsI	GCNGC	3 cut(s)	21, 120, 745
Bme18I	GGWCC	1 cut(s)	905
BmgBI	CACGTC	1 cut(s)	829
BmgT120I	GGNCC	1 cut(s)	905
BmiI	GGNNCC	1 cut(s)	716
BmsI	GCATC	1 cut(s)	148
BoxI	GACNNNNGTC	1 cut(s)	654
BpiI	GAAGAC	1 cut(s)	527
BpuEI	CTTGAG	1 cut(s)	892
BsaWI	WCCGGW	1 cut(s)	653
Bsc4I	CCNNNNNNNGG	3 cut(s)	41, 674, 902
Bse118I	RCCGGY	2 cut(s)	448, 653
Bse1I	ACTGG	1 cut(s)	427
BseGI	GGATG	3 cut(s)	6, 85, 106
BseLI	CCNNNNNNNGG	3 cut(s)	41, 674, 902
BseMII	CTCAG	1 cut(s)	27
BseNI	ACTGG	1 cut(s)	427
BseRI	GAGGAG	1 cut(s)	72
BseXI	GCAGC	3 cut(s)	31, 105, 730
BshFI	GGCC	2 cut(s)	426, 589
BshNI	GGYRCC	1 cut(s)	714
BshTI	ACCGGT	1 cut(s)	653
BsiHKAI	GWGCWC	3 cut(s)	30, 360, 740
BsiSI	CCGG	2 cut(s)	449, 654
BslI	CCNNNNNNNGG	3 cut(s)	41, 674, 902
BsmAI	GTCTC	1 cut(s)	643
BsmI	GAATGC	1 cut(s)	296
BsnI	GGCC	2 cut(s)	426, 589
Bsp1286I	GDGCHC	3 cut(s)	30, 360, 740
Bsp143I	GATC	4 cut(s)	93, 201, 328, 703
BspANI	GGCC	2 cut(s)	426, 589
BspCNI	CTCAG	1 cut(s)	28
BspHI	TCATGA	2 cut(s)	700, 732
BspLI	GGNNCC	1 cut(s)	716
BspPI	GGATC	1 cut(s)	323
BspT107I	GGYRCC	1 cut(s)	714
BsrFI	RCCGGY	2 cut(s)	448, 653
BsrI	ACTGG	1 cut(s)	427
BssAI	RCCGGY	2 cut(s)	448, 653
BssMI	GATC	4 cut(s)	93, 201, 328, 703
Bst4CI	ACNGT	1 cut(s)	645
Bst6I	CTCTTC	2 cut(s)	464, 612
BstAPI	GCANNNNNTGC	1 cut(s)	364
BstC8I	GCNNGC	1 cut(s)	525
BstDEI	CTNAG	1 cut(s)	36
BstENI	CCTNNNNNAGG	1 cut(s)	672
BstF5I	GGATG	3 cut(s)	6, 85, 106
BstKTI	GATC	4 cut(s)	96, 204, 331, 706
BstMAI	GTCTC	1 cut(s)	643
BstMBI	GATC	4 cut(s)	93, 201, 328, 703
BstMWI	GCNNNNNNNGC	3 cut(s)	25, 364, 671
BstNSI	RCATGY	1 cut(s)	826
BstPAI	GACNNNNGTC	1 cut(s)	654
BstV1I	GCAGC	3 cut(s)	31, 105, 730
BstV2I	GAAGAC	1 cut(s)	527
BstXI	CCANNNNNNTGG	1 cut(s)	500
BsuI	GTATCC	1 cut(s)	671
BsuRI	GGCC	2 cut(s)	426, 589
BtrI	CACGTC	1 cut(s)	829
BtsCI	GGATG	3 cut(s)	6, 85, 106
BtsI	GCAGTG	1 cut(s)	738
BtsIMutI	CAGTG	1 cut(s)	738
Cac8I	GCNNGC	1 cut(s)	525
CciI	TCATGA	2 cut(s)	700, 732
Cfr10I	RCCGGY	2 cut(s)	448, 653
Cfr13I	GGNCC	1 cut(s)	905
Csp6I	GTAC	3 cut(s)	253, 715, 804
CspAI	ACCGGT	1 cut(s)	653
CviAII	CATG	4 cut(s)	434, 701, 733, 823
CviQI	GTAC	3 cut(s)	253, 715, 804
DdeI	CTNAG	1 cut(s)	36
DpnI	GATC	4 cut(s)	95, 203, 330, 705
DpnII	GATC	4 cut(s)	93, 201, 328, 703
Eam1104I	CTCTTC	2 cut(s)	464, 612
EarI	CTCTTC	2 cut(s)	464, 612
Eco147I	AGGCCT	1 cut(s)	589
Eco47I	GGWCC	1 cut(s)	905
Eco57I	CTGAAG	3 cut(s)	396, 636, 855
EcoNI	CCTNNNNNAGG	1 cut(s)	672
EcoRI	GAATTC	1 cut(s)	558
FaeI	CATG	4 cut(s)	437, 704, 736, 826
FatI	CATG	4 cut(s)	433, 700, 732, 822
FauNDI	CATATG	1 cut(s)	284
FblI	GTMKAC	2 cut(s)	318, 819
Fnu4HI	GCNGC	3 cut(s)	20, 119, 744
FokI	GGATG	2 cut(s)	92, 113
Fsp4HI	GCNGC	3 cut(s)	20, 119, 744
FspBI	CTAG	4 cut(s)	471, 851, 864, 917
GluI	GCNGC	3 cut(s)	20, 119, 744
HaeIII	GGCC	2 cut(s)	426, 589
HapII	CCGG	2 cut(s)	449, 654
Hin1II	CATG	4 cut(s)	437, 704, 736, 826
HinfI	GANTC	3 cut(s)	480, 787, 867
HpaII	CCGG	2 cut(s)	449, 654
HphI	GGTGA	2 cut(s)	179, 937
Hpy166II	GTNNAC	4 cut(s)	299, 319, 786, 820
Hpy188III	TCNNGA	8 cut(s)	235, 332, 506, 555, 701, 733, 864, 871
Hpy8I	GTNNAC	4 cut(s)	299, 319, 786, 820
Hpy99I	CGWCG	3 cut(s)	695, 698, 833
HpyAV	CCTTC	4 cut(s)	44, 58, 158, 907
HpyCH4III	ACNGT	1 cut(s)	645
HpyCH4IV	ACGT	3 cut(s)	443, 696, 828
HpyCH4V	TGCA	5 cut(s)	121, 161, 367, 746, 826
HpyF10VI	GCNNNNNNNGC	3 cut(s)	25, 364, 671
HpyF3I	CTNAG	1 cut(s)	36
HpySE526I	ACGT	3 cut(s)	443, 696, 828
Hsp92II	CATG	4 cut(s)	437, 704, 736, 826
KpnI	GGTACC	1 cut(s)	718
Kzo9I	GATC	4 cut(s)	93, 201, 328, 703
LmnI	GCTCC	1 cut(s)	25
Lsp1109I	GCAGC	3 cut(s)	31, 105, 730
LweI	GCATC	1 cut(s)	148
MaeI	CTAG	4 cut(s)	471, 851, 864, 917
MaeII	ACGT	3 cut(s)	443, 696, 828
MalI	GATC	4 cut(s)	95, 203, 330, 705
MboI	GATC	4 cut(s)	93, 201, 328, 703
MboII	GAAGA	4 cut(s)	416, 451, 527, 629
MhlI	GDGCHC	3 cut(s)	30, 360, 740
MluCI	AATT	5 cut(s)	89, 191, 260, 351, 558
MlyI	GAGTC	1 cut(s)	781
MseI	TTAA	1 cut(s)	213
MslI	CAYNNNNRTG	1 cut(s)	545
MspA1I	CMGCKG	2 cut(s)	374, 614
MspI	CCGG	2 cut(s)	449, 654
Mva1269I	GAATGC	1 cut(s)	296
MwoI	GCNNNNNNNGC	3 cut(s)	25, 364, 671
NdeI	CATATG	1 cut(s)	284
NdeII	GATC	4 cut(s)	93, 201, 328, 703
NlaIII	CATG	4 cut(s)	437, 704, 736, 826
NlaIV	GGNNCC	1 cut(s)	716
NspI	RCATGY	1 cut(s)	826
PagI	TCATGA	2 cut(s)	700, 732
PceI	AGGCCT	1 cut(s)	589
PctI	GAATGC	1 cut(s)	296
PfeI	GAWTC	2 cut(s)	480, 867
PflFI	GACNNNGTC	1 cut(s)	230
PinAI	ACCGGT	1 cut(s)	653
PkrI	GCNGC	3 cut(s)	21, 120, 745
PleI	GAGTC	1 cut(s)	781
PpsI	GAGTC	1 cut(s)	781
PshAI	GACNNNNGTC	1 cut(s)	654
Psp1406I	AACGTT	1 cut(s)	443
PspN4I	GGNNCC	1 cut(s)	716
PspPI	GGNCC	1 cut(s)	905
PsyI	GACNNNGTC	1 cut(s)	230
PvuII	CAGCTG	2 cut(s)	374, 614
RsaI	GTAC	3 cut(s)	254, 716, 805
RsaNI	GTAC	3 cut(s)	253, 715, 804
RseI	CAYNNNNRTG	1 cut(s)	545
SaqAI	TTAA	1 cut(s)	213
SatI	GCNGC	3 cut(s)	20, 119, 744
Sau3AI	GATC	4 cut(s)	93, 201, 328, 703
Sau96I	GGNCC	1 cut(s)	905
SchI	GAGTC	1 cut(s)	781
SduI	GDGCHC	3 cut(s)	30, 360, 740
SfaNI	GCATC	1 cut(s)	148
SinI	GGWCC	1 cut(s)	905
SmiMI	CAYNNNNRTG	1 cut(s)	545
SmlI	CTYRAG	1 cut(s)	871
SmoI	CTYRAG	1 cut(s)	871
Sse9I	AATT	5 cut(s)	89, 191, 260, 351, 558
SseBI	AGGCCT	1 cut(s)	589
SspMI	CTAG	4 cut(s)	471, 851, 864, 917
StuI	AGGCCT	1 cut(s)	589
TaaI	ACNGT	1 cut(s)	645
TaiI	ACGT	3 cut(s)	446, 699, 831
TaqI	TCGA	2 cut(s)	478, 648
TasI	AATT	5 cut(s)	89, 191, 260, 351, 558
TatI	WGTACW	1 cut(s)	252
TfiI	GAWTC	2 cut(s)	480, 867
Tru1I	TTAA	1 cut(s)	213
Tru9I	TTAA	1 cut(s)	213
TscAI	CASTG	1 cut(s)	745
TseI	GCWGC	3 cut(s)	19, 118, 743
TspDTI	ATGAA	4 cut(s)	96, 417, 689, 774
TspGWI	ACGGA	2 cut(s)	552, 928
TspRI	CASTG	1 cut(s)	745
Tth111I	GACNNNGTC	1 cut(s)	230
VpaK11BI	GGWCC	1 cut(s)	905
XagI	CCTNNNNNAGG	1 cut(s)	672
XapI	RAATTY	2 cut(s)	191, 558
XbaI	TCTAGA	1 cut(s)	863
XceI	RCATGY	1 cut(s)	826
XcmI	CCANNNNNNNNNTGG	1 cut(s)	38
XmiI	GTMKAC	2 cut(s)	318, 819
XspI	CTAG	4 cut(s)	471, 851, 864, 917

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.