AT1G15550

Belongs to the iron ascorbate-dependent oxidoreductase family

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
Physical Location & Seq
Reverse (-)
5344388 .. 5346342
1955 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G15550.1

Sequence Viewer

Length: 1077 bp
ATGCCTGCTATGTTAACAGATGTGTTTAGAGGCCATCCCATTCACCTCCCACACTCTCACATACCTGACTTCACATCTCTCCGGGAGCTCCCGGATTCTTACAAGTGGACCCCTAAAGACGATCTCCTCTTCTCCGCTGCTCCTTCTCCTCCGGCCACCGGTGAAAACATCCCTCTCATCGACCTCGACCACCCGGACGCGACTAACCAAATCGGTCATGCATGTAGAACTTGGGGTGCCTTCCAAATCTCAAACCACGGCGTGCCTTTGGGACTTCTCCAAGACATTGAGTTTCTCACCGGTAGTCTCTTCGGGCTACCTGTCCAACGCAAGCTTAAGTCTGCTCGGTCGGAGACAGGTGTGTCCGGCTACGGCGTCGCTCGTATCGCATCTTTCTTCAATAAGCAAATGTGGTCCGAAGGTTTCACCATCACTGGCTCGCCTCTCAACGATTTCCGTAAACTTTGGCCCCAACATCACCTCAACTACTGCGATATCGTTGAAGAGTACGAGGAACATATGAAAAAGTTGGCATCGAAATTGATGTGGTTAGCACTAAATTCACTTGGGGTCAGCGAAGAAGACATTGAATGGGCCAGTCTCAGTTCAGATTTAAACTGGGCCCAAGCTGCTCTCCAGCTAAATCACTACCCGGTTTGTCCTGAACCGGACCGAGCCATGGGTCTAGCAGCTCATACCGACTCCACCCTCCTAACCATTCTGTACCAGAACAATACCGCCGGTCTACAAGTATTTCGCGATGATCTTGGTTGGGTCACCGTGCCACCGTTTCCTGGCTCGCTCGTGGTTAACGTTGGTGACCTCTTCCACATCCTATCCAATGGATTGTTTAAAAGCGTGTTGCACCGCGCTCGGGTTAACCAAACCAGAGCCCGGTTATCTGTAGCATTCCTTTGGGGTCCGCAATCTGATATCAAGATATCACCTGTACCGAAGCTGGTTAGTCCCGTTGAATCGCCTCTATACCAATCGGTGACATGGAAAGAGTATCTTCGAACAAAAGCAACTCACTTCAACAAAGCTCTTTCAATGATTAGAAATCACAGAGAAGAATGA

Protein Analysis

358

Amino Acids

40.16

Weight (kDa)

6.34

Isoelectric Point (pI)

46.92

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DIOX_N PF14226 57 - 158 1.7e-17 non-haem dioxygenase in morphine synthesis N-terminal
2OG-FeII_Oxy PF03171 210 - 307 1.5e-32 2OG-Fe(II) oxygenase superfamily
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 361
AccB1I GGYRCC 1 cut(s) 236
AccI GTMKAC 1 cut(s) 745
AccII CGCG 3 cut(s) 200, 759, 870
AciI CCGC 4 cut(s) 135, 738, 868, 923
AclI AACGTT 1 cut(s) 813
AcoI YGGCCR 1 cut(s) 153
AcsI RAATTY 1 cut(s) 559
AcyI GRCGYC 1 cut(s) 375
AdeI CACNNNGTG 1 cut(s) 262
AfaI GTAC 3 cut(s) 509, 725, 951
AfiI CCNNNNNNNGG 5 cut(s) 158, 679, 794, 874, 894
AflII CTTAAG 1 cut(s) 335
AgeI ACCGGT 2 cut(s) 158, 299
AgsI TTSAA 6 cut(s) 400, 503, 590, 974, 1036, 1050
AjnI CCWGG 1 cut(s) 793
AluBI AGCT 7 cut(s) 88, 334, 629, 640, 692, 958, 1043
AluI AGCT 7 cut(s) 88, 334, 629, 640, 692, 958, 1043
Alw21I GWGCWC 1 cut(s) 90
Alw26I GTCTC 3 cut(s) 311, 347, 605
Ama87I CYCGRG 1 cut(s) 873
AoxI GGCC 5 cut(s) 31, 153, 467, 594, 621
ApaI GGGCCC 1 cut(s) 625
ApeKI GCWGC 3 cut(s) 137, 629, 689
ApoI RAATTY 1 cut(s) 559
AsiGI ACCGGT 2 cut(s) 158, 299
AspLEI GCGC 1 cut(s) 872
AspS9I GGNCC 8 cut(s) 108, 414, 468, 594, 621, 622, 670, 920
AsuC2I CCSGG 5 cut(s) 83, 92, 194, 653, 895
AsuHPI GGTGA 9 cut(s) 35, 173, 289, 418, 470, 769, 830, 936, 1006
AsuII TTCGAA 1 cut(s) 1015
AvaI CYCGRG 1 cut(s) 873
AvaII GGWCC 4 cut(s) 108, 414, 670, 920
BaeGI GKGCMC 1 cut(s) 625
BanI GGYRCC 1 cut(s) 236
BanII GRGCYC 3 cut(s) 90, 625, 895
BauI CACGAG 1 cut(s) 803
BbsI GAAGAC 1 cut(s) 588
Bbv12I GWGCWC 1 cut(s) 90
BbvI GCAGC 3 cut(s) 124, 616, 701
BccI CCATC 2 cut(s) 42, 437
BceAI ACGGC 2 cut(s) 274, 388
BcgI CGANNNNNNTGC 2 cut(s) 854, 888
BciT130I CCWGG 1 cut(s) 795
BcnI CCSGG 5 cut(s) 83, 92, 194, 653, 895
BcoDI GTCTC 3 cut(s) 311, 347, 605
BfaI CTAG 1 cut(s) 686
BfmI CTRYAG 1 cut(s) 903
BfrI CTTAAG 1 cut(s) 335
BisI GCNGC 3 cut(s) 138, 630, 690
BlsI GCNGC 3 cut(s) 139, 631, 691
Bme1390I CCNGG 6 cut(s) 83, 92, 194, 653, 795, 895
Bme18I GGWCC 4 cut(s) 108, 414, 670, 920
BmeT110I CYCGRG 1 cut(s) 873
BmgT120I GGNCC 8 cut(s) 108, 414, 468, 594, 621, 622, 670, 920
BmiI GGNNCC 5 cut(s) 110, 238, 470, 623, 921
BmrFI CCNGG 6 cut(s) 83, 92, 194, 653, 795, 895
BmrI ACTGGG 1 cut(s) 628
BmsI GCATC 2 cut(s) 398, 542
BmuI ACTGGG 1 cut(s) 628
BpiI GAAGAC 1 cut(s) 588
BpmI CTGGAG 1 cut(s) 620
Bpu14I TTCGAA 1 cut(s) 1015
BpuMI CCSGG 5 cut(s) 83, 92, 194, 653, 895
BsaHI GRCGYC 1 cut(s) 375
BsaJI CCNNGG 2 cut(s) 256, 678
BsaWI WCCGGW 3 cut(s) 158, 299, 667
Bsc4I CCNNNNNNNGG 5 cut(s) 158, 679, 794, 874, 894
Bse118I RCCGGY 3 cut(s) 158, 299, 740
Bse1I ACTGG 3 cut(s) 439, 597, 623
BseBI CCWGG 1 cut(s) 795
BseDI CCNNGG 2 cut(s) 256, 678
BseGI GGATG 3 cut(s) 34, 168, 831
BseLI CCNNNNNNNGG 5 cut(s) 158, 679, 794, 874, 894
BseMII CTCAG 1 cut(s) 616
BseNI ACTGG 3 cut(s) 439, 597, 623
BseRI GAGGAG 2 cut(s) 116, 138
BseSI GKGCMC 1 cut(s) 625
BseXI GCAGC 3 cut(s) 124, 616, 701
Bsh1236I CGCG 3 cut(s) 200, 759, 870
Bsh1285I CGRYCG 1 cut(s) 350
BshFI GGCC 5 cut(s) 33, 155, 469, 596, 623
BshNI GGYRCC 1 cut(s) 236
BshTI ACCGGT 2 cut(s) 158, 299
BsiEI CGRYCG 1 cut(s) 350
BsiHKAI GWGCWC 1 cut(s) 90
BsiHKCI CYCGRG 1 cut(s) 873
BslFI GGGAC 2 cut(s) 285, 951
BslI CCNNNNNNNGG 5 cut(s) 158, 679, 794, 874, 894
BsmAI GTCTC 3 cut(s) 311, 347, 605
BsmFI GGGAC 2 cut(s) 285, 951
BsmI GAATGC 1 cut(s) 908
BsnI GGCC 5 cut(s) 33, 155, 469, 596, 623
BsoBI CYCGRG 1 cut(s) 873
Bsp119I TTCGAA 1 cut(s) 1015
Bsp120I GGGCCC 1 cut(s) 621
Bsp1286I GDGCHC 3 cut(s) 90, 625, 895
Bsp143I GATC 2 cut(s) 121, 763
Bsp19I CCATGG 1 cut(s) 678
Bsp68I TCGCGA 1 cut(s) 759
BspACI CCGC 4 cut(s) 135, 738, 868, 923
BspANI GGCC 5 cut(s) 33, 155, 469, 596, 623
BspCNI CTCAG 1 cut(s) 615
BspFNI CGCG 3 cut(s) 200, 759, 870
BspLI GGNNCC 5 cut(s) 110, 238, 470, 623, 921
BspT104I TTCGAA 1 cut(s) 1015
BspT107I GGYRCC 1 cut(s) 236
BspTI CTTAAG 1 cut(s) 335
BsrFI RCCGGY 3 cut(s) 158, 299, 740
BsrI ACTGG 3 cut(s) 439, 597, 623
BssAI RCCGGY 3 cut(s) 158, 299, 740
BssECI CCNNGG 2 cut(s) 256, 678
BssMI GATC 2 cut(s) 121, 763
BssNI GRCGYC 1 cut(s) 375
BssSI CACGAG 1 cut(s) 803
BssT1I CCWWGG 1 cut(s) 678
Bst2BI CACGAG 1 cut(s) 803
Bst2UI CCWGG 1 cut(s) 795
Bst4CI ACNGT 2 cut(s) 781, 789
Bst6I CTCTTC 4 cut(s) 134, 314, 498, 830
BstACI GRCGYC 1 cut(s) 375
BstAFI CTTAAG 1 cut(s) 335
BstBI TTCGAA 1 cut(s) 1015
BstC8I GCNNGC 5 cut(s) 6, 263, 332, 440, 800
BstDEI CTNAG 1 cut(s) 602
BstDSI CCRYGG 2 cut(s) 256, 678
BstEII GGTNACC 2 cut(s) 775, 818
BstF5I GGATG 3 cut(s) 34, 168, 831
BstFNI CGCG 3 cut(s) 200, 759, 870
BstHHI GCGC 1 cut(s) 872
BstKTI GATC 2 cut(s) 124, 766
BstMAI GTCTC 3 cut(s) 311, 347, 605
BstMBI GATC 2 cut(s) 121, 763
BstMCI CGRYCG 1 cut(s) 350
BstMWI GCNNNNNNNGC 2 cut(s) 386, 629
BstNI CCWGG 1 cut(s) 795
BstNSI RCATGY 1 cut(s) 225
BstPI GGTNACC 2 cut(s) 775, 818
BstSCI CCNGG 6 cut(s) 81, 90, 192, 651, 793, 893
BstSFI CTRYAG 1 cut(s) 903
BstSLI GKGCMC 1 cut(s) 625
BstUI CGCG 3 cut(s) 200, 759, 870
BstV1I GCAGC 3 cut(s) 124, 616, 701
BstV2I GAAGAC 1 cut(s) 588
BsuRI GGCC 5 cut(s) 33, 155, 469, 596, 623
BtgI CCRYGG 2 cut(s) 256, 678
BtgZI GCGATG 1 cut(s) 774
BtsCI GGATG 3 cut(s) 34, 168, 831
BtsIMutI CAGTG 1 cut(s) 432
BtuMI TCGCGA 1 cut(s) 759
Cac8I GCNNGC 5 cut(s) 6, 263, 332, 440, 800
CfoI GCGC 1 cut(s) 872
Cfr10I RCCGGY 3 cut(s) 158, 299, 740
Cfr13I GGNCC 8 cut(s) 108, 414, 468, 594, 621, 622, 670, 920
CpoI CGGWCCG 1 cut(s) 670
CseI GACGC 2 cut(s) 206, 364
Csp6I GTAC 3 cut(s) 508, 724, 950
CspAI ACCGGT 2 cut(s) 158, 299
CspI CGGWCCG 1 cut(s) 670
CviAII CATG 4 cut(s) 218, 222, 679, 999
CviQI GTAC 3 cut(s) 508, 724, 950
DdeI CTNAG 1 cut(s) 602
DpnI GATC 2 cut(s) 123, 765
DpnII GATC 2 cut(s) 121, 763
DraI TTTAAA 2 cut(s) 615, 853
DraIII CACNNNGTG 1 cut(s) 262
DrdI GACNNNNNNGTC 1 cut(s) 361
DseDI GACNNNNNNGTC 1 cut(s) 361
EaeI YGGCCR 1 cut(s) 153
Eam1104I CTCTTC 4 cut(s) 134, 314, 498, 830
EarI CTCTTC 4 cut(s) 134, 314, 498, 830
Ecl136II GAGCTC 1 cut(s) 88
Eco130I CCWWGG 1 cut(s) 678
Eco24I GRGCYC 3 cut(s) 90, 625, 895
Eco32I GATATC 3 cut(s) 496, 934, 942
Eco47I GGWCC 4 cut(s) 108, 414, 670, 920
Eco53kI GAGCTC 1 cut(s) 88
Eco88I CYCGRG 1 cut(s) 873
Eco91I GGTNACC 2 cut(s) 775, 818
EcoICRI GAGCTC 1 cut(s) 88
EcoO65I GGTNACC 2 cut(s) 775, 818
EcoRII CCWGG 1 cut(s) 793
EcoRV GATATC 3 cut(s) 496, 934, 942
EcoT14I CCWWGG 1 cut(s) 678
EcoT22I ATGCAT 1 cut(s) 223
EcoT38I GRGCYC 3 cut(s) 90, 625, 895
ErhI CCWWGG 1 cut(s) 678
FaeI CATG 4 cut(s) 221, 225, 682, 1002
FalI AAGNNNNNCTT 2 cut(s) 996, 1028
FaqI GGGAC 2 cut(s) 285, 951
FatI CATG 4 cut(s) 217, 221, 678, 998
FauNDI CATATG 1 cut(s) 519
FblI GTMKAC 1 cut(s) 745
Fnu4HI GCNGC 3 cut(s) 138, 630, 690
FokI GGATG 3 cut(s) 21, 155, 818
FriOI GRGCYC 3 cut(s) 90, 625, 895
Fsp4HI GCNGC 3 cut(s) 138, 630, 690
FspBI CTAG 1 cut(s) 686
GlaI GCGC 1 cut(s) 871
GluI GCNGC 3 cut(s) 138, 630, 690
GsuI CTGGAG 1 cut(s) 620
HaeIII GGCC 5 cut(s) 33, 155, 469, 596, 623
HgaI GACGC 2 cut(s) 206, 364
HhaI GCGC 1 cut(s) 872
Hin1I GRCGYC 1 cut(s) 375
Hin1II CATG 4 cut(s) 221, 225, 682, 1002
Hin6I GCGC 1 cut(s) 870
HinP1I GCGC 1 cut(s) 870
HincII GTYRAC 3 cut(s) 15, 811, 880
HindII GTYRAC 3 cut(s) 15, 811, 880
HindIII AAGCTT 1 cut(s) 332
HinfI GANTC 3 cut(s) 95, 701, 974
HpaI GTTAAC 3 cut(s) 15, 811, 880
HphI GGTGA 9 cut(s) 35, 173, 289, 418, 470, 769, 830, 936, 1006
Hpy166II GTNNAC 6 cut(s) 15, 108, 461, 746, 811, 880
Hpy188I TCNGA 4 cut(s) 352, 418, 610, 931
Hpy188III TCNNGA 3 cut(s) 662, 758, 937
Hpy8I GTNNAC 6 cut(s) 15, 108, 461, 746, 811, 880
Hpy99I CGWCG 1 cut(s) 380
HpyAV CCTTC 3 cut(s) 153, 250, 413
HpyCH4III ACNGT 2 cut(s) 781, 789
HpyCH4IV ACGT 1 cut(s) 813
HpyCH4V TGCA 2 cut(s) 221, 865
HpyF10VI GCNNNNNNNGC 2 cut(s) 386, 629
HpyF3I CTNAG 1 cut(s) 602
HpySE526I ACGT 1 cut(s) 813
Hsp92I GRCGYC 1 cut(s) 375
Hsp92II CATG 4 cut(s) 221, 225, 682, 1002
HspAI GCGC 1 cut(s) 870
KspAI GTTAAC 3 cut(s) 15, 811, 880
Kzo9I GATC 2 cut(s) 121, 763
LmnI GCTCC 3 cut(s) 85, 93, 145
Lsp1109I GCAGC 3 cut(s) 124, 616, 701
LweI GCATC 2 cut(s) 398, 542
MaeI CTAG 1 cut(s) 686
MaeII ACGT 1 cut(s) 813
MaeIII GTNAC 3 cut(s) 775, 818, 994
MalI GATC 2 cut(s) 123, 765
MboI GATC 2 cut(s) 121, 763
MboII GAAGA 8 cut(s) 121, 301, 388, 515, 590, 593, 817, 1004
MhlI GDGCHC 3 cut(s) 90, 625, 895
MluCI AATT 2 cut(s) 539, 559
MlyI GAGTC 1 cut(s) 695
MmeI TCCRAC 2 cut(s) 330, 349
Mph1103I ATGCAT 1 cut(s) 223
MseI TTAA 6 cut(s) 14, 336, 614, 810, 852, 879
MspA1I CMGCKG 1 cut(s) 137
MspCI CTTAAG 1 cut(s) 335
MspR9I CCNGG 6 cut(s) 83, 92, 194, 653, 795, 895
Mva1269I GAATGC 1 cut(s) 908
MvaI CCWGG 1 cut(s) 795
MvnI CGCG 3 cut(s) 200, 759, 870
MwoI GCNNNNNNNGC 2 cut(s) 386, 629
NciI CCSGG 5 cut(s) 83, 92, 194, 653, 895
NcoI CCATGG 1 cut(s) 678
NdeI CATATG 1 cut(s) 519
NdeII GATC 2 cut(s) 121, 763
NlaIII CATG 4 cut(s) 221, 225, 682, 1002
NlaIV GGNNCC 5 cut(s) 110, 238, 470, 623, 921
NmuCI GTSAC 3 cut(s) 775, 818, 994
NruI TCGCGA 1 cut(s) 759
NsiI ATGCAT 1 cut(s) 223
NspI RCATGY 1 cut(s) 225
NspV TTCGAA 1 cut(s) 1015
PcsI WCGNNNNNNNCGW 1 cut(s) 810
PctI GAATGC 1 cut(s) 908
PfeI GAWTC 2 cut(s) 95, 974
PfoI TCCNGGA 2 cut(s) 81, 90
PinAI ACCGGT 2 cut(s) 158, 299
PkrI GCNGC 3 cut(s) 139, 631, 691
PleI GAGTC 1 cut(s) 695
PpsI GAGTC 1 cut(s) 695
Psp124BI GAGCTC 1 cut(s) 90
Psp1406I AACGTT 1 cut(s) 813
Psp6I CCWGG 1 cut(s) 793
PspEI GGTNACC 2 cut(s) 775, 818
PspGI CCWGG 1 cut(s) 793
PspN4I GGNNCC 5 cut(s) 110, 238, 470, 623, 921
PspOMI GGGCCC 1 cut(s) 621
PspPI GGNCC 8 cut(s) 108, 414, 468, 594, 621, 622, 670, 920
RruI TCGCGA 1 cut(s) 759
RsaI GTAC 3 cut(s) 509, 725, 951
RsaNI GTAC 3 cut(s) 508, 724, 950
Rsr2I CGGWCCG 1 cut(s) 670
RsrII CGGWCCG 1 cut(s) 670
SacI GAGCTC 1 cut(s) 90
SaqAI TTAA 6 cut(s) 14, 336, 614, 810, 852, 879
SatI GCNGC 3 cut(s) 138, 630, 690
Sau3AI GATC 2 cut(s) 121, 763
Sau96I GGNCC 8 cut(s) 108, 414, 468, 594, 621, 622, 670, 920
SchI GAGTC 1 cut(s) 695
ScrFI CCNGG 6 cut(s) 83, 92, 194, 653, 795, 895
SduI GDGCHC 3 cut(s) 90, 625, 895
SfaNI GCATC 2 cut(s) 398, 542
SfcI CTRYAG 1 cut(s) 903
SfuI TTCGAA 1 cut(s) 1015
SgrAI CRCCGGYG 1 cut(s) 158
SinI GGWCC 4 cut(s) 108, 414, 670, 920
SmlI CTYRAG 1 cut(s) 335
SmoI CTYRAG 1 cut(s) 335
Sse9I AATT 2 cut(s) 539, 559
SsiI CCGC 4 cut(s) 135, 738, 868, 923
SspMI CTAG 1 cut(s) 686
SstI GAGCTC 1 cut(s) 90
StyD4I CCNGG 6 cut(s) 81, 90, 192, 651, 793, 893
StyI CCWWGG 1 cut(s) 678
TaaI ACNGT 2 cut(s) 781, 789
TaiI ACGT 1 cut(s) 816
TaqI TCGA 4 cut(s) 180, 186, 536, 1015
TaqII GACCGA 3 cut(s) 203, 336, 687
TasI AATT 2 cut(s) 539, 559
TfiI GAWTC 2 cut(s) 95, 974
Tru1I TTAA 6 cut(s) 14, 336, 614, 810, 852, 879
Tru9I TTAA 6 cut(s) 14, 336, 614, 810, 852, 879
TscAI CASTG 1 cut(s) 439
TseFI GTSAC 3 cut(s) 775, 818, 994
TseI GCWGC 3 cut(s) 137, 629, 689
Tsp45I GTSAC 3 cut(s) 775, 818, 994
TspDTI ATGAA 1 cut(s) 536
TspGWI ACGGA 1 cut(s) 446
TspRI CASTG 1 cut(s) 439
Vha464I CTTAAG 1 cut(s) 335
VpaK11BI GGWCC 4 cut(s) 108, 414, 670, 920
XapI RAATTY 1 cut(s) 559
XceI RCATGY 1 cut(s) 225
XmiI GTMKAC 1 cut(s) 745
XspI CTAG 1 cut(s) 686
Zsp2I ATGCAT 1 cut(s) 223
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.