Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr17

Orthogroup ID

OG0002967

Physical Location & Seq

Genomic Coordinates Forward (+)

18641686 .. 18643406

Gene Structure 1721 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom17g20380.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1047 bp

ATGCCTGCAAGACTCTCTGATGCCTTCAAATCCCACCCTGTCAACCTCCAACTCAAACACCCAGATTTCAACTCATTACATGAATTGCCAGACTCCTATGCATGGACAAACAATGATGATCACTACCCATCTTCCCTAAGCTCATTTGGGGTAGACGATTCTGTTCCGGTCATCGATCTCTCCGAACCCAATGCTCTTAAGCTCACAGGCCATGCATGTAAGACTTGGGGAGTCTTCCAAGTCACTAACCATGGCATCCCACAGAAGCTTCTTGATGACATTGAGTCCGCAGGCAAAAGCCTTTTCTCTCTGCCAGTCGAGCAGAAGCTCAAAGCCGCCCGACCGCCGGACGGCATTTCAGGCTATGGTTTTGCTCGGATATCTTCGTTTTTTAGGAAGCTCATGTGGTCTGAGGGCAATATCATTGAGGAATATGAGAAGGAAATGAAAAGGCTTGCTGGGAGGTTGATGTGGCTTATGCTTGGCTCACTAGGCATATCCCCGGAAGATGTAAAGTGGGCTGGCTCGAAAGGTGAATTCAAAGGTGCATCAGCTGCCTTACAATTGAATTCTTACCCGGCTTGCCCAGAGCCAGATCGGGCCATGGGTTTGGCTGCACATACGGATTCTACCCTCCTCACAATCCTCTACCAAAACAATACTAGTGGTTTGCAAGTGCTTCGAGACGGCACCGGATGGGTCACGGTTCCACCAATGCCCGGTGCTTTGGTGGTCAATGTTGGTGATCTCATCCATATATTATCTAACGGGGTGTACCCAAGTGTCCTTCATCGGGCTGTAGTTAATCGCACCCAACATCGTCTATCCATCGCTTACTTATTCGGTCCCCCGGCTAGTGTCCAAATCTCACCCCTATCAAAATTAGTTGGTCCAAGTCATCCTCCTCTCTACCGGCCAATTACTTGGAATGAGTACCTTGGCACCAAAGCAAAACATTTCAATAAGGCACTTTCATCGGTCAGACTTTGTGCTCCTCTAAGTTCATTAGCAGATGTAAATGATCATAACAGCGTAAAAGTCGTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006629 GO:0006720 GO:0006721 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0008299 GO:0008610 GO:0009058 GO:0009314 GO:0009416 GO:0009628 GO:0009639 GO:0009685 GO:0009686 GO:0009719 GO:0009725 GO:0009739 GO:0009740 GO:0009755 GO:0009987 GO:0010033 GO:0010114 GO:0010476 GO:0010817 GO:0016053 GO:0016101 GO:0016102 GO:0016114 GO:0016491 GO:0016705 GO:0016706 GO:0016707 GO:0019752 GO:0023052 GO:0032870 GO:0033993 GO:0042221 GO:0042445 GO:0042446 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044283 GO:0044424 GO:0044464 GO:0046394 GO:0050789 GO:0050794 GO:0050896 GO:0051213 GO:0051716 GO:0055114 GO:0065007 GO:0065008 GO:0070887 GO:0071229 GO:0071310 GO:0071370 GO:0071396 GO:0071495 GO:0071704 GO:1901576 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

ko00904 ko01110 map00904 map01110

Pfam Domains

Protein Families

2OG-FeII_Oxy DIOX_N

Protein Analysis

349

Amino Acids

38.05

Weight (kDa)

7.79

Isoelectric Point (pI)

39.17

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DIOX_N	PF14226	55 - 146	2.7e-20	non-haem dioxygenase in morphine synthesis N-terminal
2OG-FeII_Oxy	PF03171	185 - 283	4.5e-34	2OG-Fe(II) oxygenase superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002967)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G15550 AT1G80340
fragaria_vesca	FvH4_6g30780
malus_domestica	MD02G1263100.v1.1 MD02G1263200.v1.1 MD07G1054800.v1.1 MD09G1217400.v1.1 MD17G1199100.v1.1
prunus_persica	Prupe.2G061700_v2.0.a1 Prupe.3G075600_v2.0.a1
pyrus_communis	pycom07g04260 pycom09g13440 pycom17g20380
rosa_chinensis	RchiOBHm_Chr2g0137231 RchiOBHm_Chr7g0236321
rosa_laevigata	RLG00000001086 RLG00000019636
rosa_multiflora	Rmu_co8273963.1_g000001 Rmu_sc0000894.1_g000034 Rmu_sc0001441.1_g000006 Rmu_sc0009898.1_g000005 Rmu_sc0029248.1_g000002
rosa_roxburghii	Rroxscaffold_2G00107310 Rroxscaffold_3G00225230
rosa_rugosa	Rorug02G0339700 Rorug07G0295900 Rorug07G0296000
rosa_samantha	Rh2AG388500 Rh2BG396100 Rh2CG375900 Rh2DG411200 Rh7AG450800 Rh7BG422300 Rh7CG470400 Rh7CG470500 Rh7DG439800
rosa_wichuraiana	Rw2G031830 Rw7G037480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	689, 941
AccI	GTMKAC	1 cut(s)	153
AciI	CCGC	3 cut(s)	288, 336, 344
AcoI	YGGCCR	1 cut(s)	914
AcsI	RAATTY	2 cut(s)	536, 568
AfaI	GTAC	2 cut(s)	776, 935
AfiI	CCNNNNNNNGG	5 cut(s)	102, 346, 350, 719, 793
AflII	CTTAAG	1 cut(s)	197
AgsI	TTSAA	5 cut(s)	28, 70, 541, 568, 961
AhdI	GACNNNNNGTC	1 cut(s)	283
AhlI	ACTAGT	1 cut(s)	662
AluBI	AGCT	6 cut(s)	141, 202, 268, 328, 400, 554
AluI	AGCT	6 cut(s)	141, 202, 268, 328, 400, 554
Alw21I	GWGCWC	1 cut(s)	994
Alw26I	GTCTC	1 cut(s)	678
AoxI	GGCC	3 cut(s)	208, 600, 914
ApeKI	GCWGC	2 cut(s)	554, 614
ApoI	RAATTY	2 cut(s)	536, 568
AspS9I	GGNCC	3 cut(s)	600, 845, 890
AsuC2I	CCSGG	4 cut(s)	503, 578, 720, 851
AsuHPI	GGTGA	3 cut(s)	545, 755, 861
AvaII	GGWCC	2 cut(s)	845, 890
BanI	GGYRCC	2 cut(s)	689, 941
BbsI	GAAGAC	1 cut(s)	226
Bbv12I	GWGCWC	1 cut(s)	994
BbvI	GCAGC	2 cut(s)	541, 601
BccI	CCATC	3 cut(s)	136, 690, 836
BceAI	ACGGC	2 cut(s)	367, 703
BcgI	CGANNNNNNTGC	6 cut(s)	173, 207, 662, 696, 957, 991
BclI	TGATCA	2 cut(s)	118, 1021
BcnI	CCSGG	4 cut(s)	503, 578, 720, 851
BcoDI	GTCTC	1 cut(s)	678
BcuI	ACTAGT	1 cut(s)	662
BfaI	CTAG	4 cut(s)	491, 663, 855, 1045
BfmI	CTRYAG	1 cut(s)	798
BfrI	CTTAAG	1 cut(s)	197
BisI	GCNGC	3 cut(s)	336, 555, 615
BlsI	GCNGC	3 cut(s)	337, 556, 616
Bme1390I	CCNGG	4 cut(s)	503, 578, 720, 851
Bme18I	GGWCC	2 cut(s)	845, 890
BmeRI	GACNNNNNGTC	1 cut(s)	283
BmgT120I	GGNCC	3 cut(s)	600, 845, 890
BmiI	GGNNCC	4 cut(s)	691, 708, 847, 943
BmrFI	CCNGG	4 cut(s)	503, 578, 720, 851
BmsI	GCATC	3 cut(s)	10, 264, 557
BpiI	GAAGAC	1 cut(s)	226
Bpu10I	CCTNAGC	1 cut(s)	137
BpuMI	CCSGG	4 cut(s)	503, 578, 720, 851
Bsa29I	ATCGAT	1 cut(s)	174
BsaJI	CCNNGG	5 cut(s)	250, 501, 603, 849, 937
BsaWI	WCCGGW	2 cut(s)	166, 692
Bsc4I	CCNNNNNNNGG	5 cut(s)	102, 346, 350, 719, 793
Bse118I	RCCGGY	1 cut(s)	912
Bse1I	ACTGG	1 cut(s)	314
BseCI	ATCGAT	1 cut(s)	174
BseDI	CCNNGG	5 cut(s)	250, 501, 603, 849, 937
BseGI	GGATG	4 cut(s)	255, 701, 750, 898
BseLI	CCNNNNNNNGG	5 cut(s)	102, 346, 350, 719, 793
BseMII	CTCAG	1 cut(s)	402
BseNI	ACTGG	1 cut(s)	314
BseRI	GAGGAG	3 cut(s)	626, 894, 984
BseXI	GCAGC	2 cut(s)	541, 601
BseYI	CCCAGC	1 cut(s)	458
BsgI	GTGCAG	1 cut(s)	600
Bsh1285I	CGRYCG	1 cut(s)	344
BshFI	GGCC	3 cut(s)	210, 602, 916
BshNI	GGYRCC	2 cut(s)	689, 941
BshVI	ATCGAT	1 cut(s)	174
BsiEI	CGRYCG	1 cut(s)	344
BsiHKAI	GWGCWC	1 cut(s)	994
BsiSI	CCGG	8 cut(s)	167, 347, 503, 578, 693, 720, 851, 913
BslFI	GGGAC	1 cut(s)	831
BslI	CCNNNNNNNGG	5 cut(s)	102, 346, 350, 719, 793
BsmAI	GTCTC	1 cut(s)	678
BsmBI	CGTCTC	1 cut(s)	678
BsmFI	GGGAC	1 cut(s)	831
BsnI	GGCC	3 cut(s)	210, 602, 916
Bsp1286I	GDGCHC	1 cut(s)	994
Bsp143I	GATC	5 cut(s)	118, 175, 595, 745, 1021
Bsp19I	CCATGG	2 cut(s)	250, 603
BspACI	CCGC	3 cut(s)	288, 336, 344
BspANI	GGCC	3 cut(s)	210, 602, 916
BspCNI	CTCAG	1 cut(s)	403
BspDI	ATCGAT	1 cut(s)	174
BspLI	GGNNCC	4 cut(s)	691, 708, 847, 943
BspT107I	GGYRCC	2 cut(s)	689, 941
BspTI	CTTAAG	1 cut(s)	197
BsrFI	RCCGGY	1 cut(s)	912
BsrI	ACTGG	1 cut(s)	314
BssAI	RCCGGY	1 cut(s)	912
BssECI	CCNNGG	5 cut(s)	250, 501, 603, 849, 937
BssMI	GATC	5 cut(s)	118, 175, 595, 745, 1021
BssT1I	CCWWGG	3 cut(s)	250, 603, 937
Bst4CI	ACNGT	1 cut(s)	706
BstAFI	CTTAAG	1 cut(s)	197
BstAPI	GCANNNNNTGC	1 cut(s)	554
BstC8I	GCNNGC	5 cut(s)	6, 292, 456, 523, 583
BstDEI	CTNAG	3 cut(s)	137, 411, 998
BstDSI	CCRYGG	2 cut(s)	250, 603
BstF5I	GGATG	4 cut(s)	255, 701, 750, 898
BstKTI	GATC	5 cut(s)	121, 178, 598, 748, 1024
BstMAI	GTCTC	1 cut(s)	678
BstMBI	GATC	5 cut(s)	118, 175, 595, 745, 1021
BstMCI	CGRYCG	1 cut(s)	344
BstMWI	GCNNNNNNNGC	4 cut(s)	319, 360, 492, 554
BstNSI	RCATGY	1 cut(s)	219
BstSCI	CCNGG	4 cut(s)	501, 576, 718, 849
BstSFI	CTRYAG	1 cut(s)	798
BstV1I	GCAGC	2 cut(s)	541, 601
BstV2I	GAAGAC	1 cut(s)	226
BstXI	CCANNNNNNTGG	2 cut(s)	610, 924
Bsu15I	ATCGAT	1 cut(s)	174
BsuRI	GGCC	3 cut(s)	210, 602, 916
BsuTUI	ATCGAT	1 cut(s)	174
BtgI	CCRYGG	2 cut(s)	250, 603
BtgZI	GCGATG	1 cut(s)	814
BtsCI	GGATG	4 cut(s)	255, 701, 750, 898
Cac8I	GCNNGC	5 cut(s)	6, 292, 456, 523, 583
Cfr10I	RCCGGY	1 cut(s)	912
Cfr13I	GGNCC	3 cut(s)	600, 845, 890
ClaI	ATCGAT	1 cut(s)	174
Csp6I	GTAC	2 cut(s)	775, 934
CspCI	CAANNNNNGTGG	2 cut(s)	646, 681
CviAII	CATG	7 cut(s)	80, 102, 212, 216, 251, 403, 604
CviQI	GTAC	2 cut(s)	775, 934
DdeI	CTNAG	3 cut(s)	137, 411, 998
DpnI	GATC	5 cut(s)	120, 177, 597, 747, 1023
DpnII	GATC	5 cut(s)	118, 175, 595, 745, 1021
DriI	GACNNNNNGTC	1 cut(s)	283
EaeI	YGGCCR	1 cut(s)	914
Eam1105I	GACNNNNNGTC	1 cut(s)	283
Eco130I	CCWWGG	3 cut(s)	250, 603, 937
Eco32I	GATATC	1 cut(s)	381
Eco47I	GGWCC	2 cut(s)	845, 890
EcoRI	GAATTC	2 cut(s)	536, 568
EcoRV	GATATC	1 cut(s)	381
EcoT14I	CCWWGG	3 cut(s)	250, 603, 937
EcoT22I	ATGCAT	2 cut(s)	103, 217
ErhI	CCWWGG	3 cut(s)	250, 603, 937
Esp3I	CGTCTC	1 cut(s)	678
FaeI	CATG	7 cut(s)	83, 105, 215, 219, 254, 406, 607
FaqI	GGGAC	1 cut(s)	831
FatI	CATG	7 cut(s)	79, 101, 211, 215, 250, 402, 603
FbaI	TGATCA	2 cut(s)	118, 1021
FblI	GTMKAC	1 cut(s)	153
Fnu4HI	GCNGC	3 cut(s)	336, 555, 615
FokI	GGATG	4 cut(s)	242, 708, 737, 885
Fsp4HI	GCNGC	3 cut(s)	336, 555, 615
FspBI	CTAG	4 cut(s)	491, 663, 855, 1045
GluI	GCNGC	3 cut(s)	336, 555, 615
GsaI	CCCAGC	1 cut(s)	462
HaeIII	GGCC	3 cut(s)	210, 602, 916
HapII	CCGG	8 cut(s)	167, 347, 503, 578, 693, 720, 851, 913
Hin1II	CATG	7 cut(s)	83, 105, 215, 219, 254, 406, 607
HincII	GTYRAC	1 cut(s)	43
HindII	GTYRAC	1 cut(s)	43
HindIII	AAGCTT	1 cut(s)	266
HinfI	GANTC	6 cut(s)	12, 92, 158, 231, 284, 626
HpaII	CCGG	8 cut(s)	167, 347, 503, 578, 693, 720, 851, 913
HphI	GGTGA	3 cut(s)	545, 755, 861
Hpy166II	GTNNAC	3 cut(s)	43, 154, 775
Hpy188I	TCNGA	5 cut(s)	19, 184, 378, 412, 983
Hpy188III	TCNNGA	2 cut(s)	272, 683
Hpy8I	GTNNAC	3 cut(s)	43, 154, 775
HpyAV	CCTTC	3 cut(s)	34, 433, 797
HpyCH4III	ACNGT	1 cut(s)	706
HpyCH4V	TGCA	6 cut(s)	8, 101, 215, 548, 617, 673
HpyF10VI	GCNNNNNNNGC	4 cut(s)	319, 360, 492, 554
HpyF3I	CTNAG	3 cut(s)	137, 411, 998
Hsp92II	CATG	7 cut(s)	83, 105, 215, 219, 254, 406, 607
Ksp22I	TGATCA	2 cut(s)	118, 1021
Kzo9I	GATC	5 cut(s)	118, 175, 595, 745, 1021
LmnI	GCTCC	1 cut(s)	997
Lsp1109I	GCAGC	2 cut(s)	541, 601
LweI	GCATC	3 cut(s)	10, 264, 557
MaeI	CTAG	4 cut(s)	491, 663, 855, 1045
MaeIII	GTNAC	2 cut(s)	241, 700
MalI	GATC	5 cut(s)	120, 177, 597, 747, 1023
MboI	GATC	5 cut(s)	118, 175, 595, 745, 1021
MboII	GAAGA	4 cut(s)	123, 226, 375, 518
MfeI	CAATTG	1 cut(s)	563
MhlI	GDGCHC	1 cut(s)	994
MluCI	AATT	6 cut(s)	83, 536, 563, 568, 881, 918
MlyI	GAGTC	4 cut(s)	6, 86, 240, 293
MmeI	TCCRAC	1 cut(s)	73
Mph1103I	ATGCAT	2 cut(s)	103, 217
MseI	TTAA	2 cut(s)	198, 804
MspA1I	CMGCKG	1 cut(s)	554
MspCI	CTTAAG	1 cut(s)	197
MspI	CCGG	8 cut(s)	167, 347, 503, 578, 693, 720, 851, 913
MspR9I	CCNGG	4 cut(s)	503, 578, 720, 851
MunI	CAATTG	1 cut(s)	563
MwoI	GCNNNNNNNGC	4 cut(s)	319, 360, 492, 554
NciI	CCSGG	4 cut(s)	503, 578, 720, 851
NcoI	CCATGG	2 cut(s)	250, 603
NdeII	GATC	5 cut(s)	118, 175, 595, 745, 1021
NlaIII	CATG	7 cut(s)	83, 105, 215, 219, 254, 406, 607
NlaIV	GGNNCC	4 cut(s)	691, 708, 847, 943
NmuCI	GTSAC	2 cut(s)	241, 700
NsiI	ATGCAT	2 cut(s)	103, 217
NspI	RCATGY	1 cut(s)	219
PcsI	WCGNNNNNNNCGW	1 cut(s)	180
PfeI	GAWTC	2 cut(s)	158, 626
PkrI	GCNGC	3 cut(s)	337, 556, 616
PleI	GAGTC	4 cut(s)	6, 86, 239, 292
PpsI	GAGTC	4 cut(s)	6, 86, 239, 292
PspFI	CCCAGC	1 cut(s)	458
PspN4I	GGNNCC	4 cut(s)	691, 708, 847, 943
PspPI	GGNCC	3 cut(s)	600, 845, 890
PvuII	CAGCTG	1 cut(s)	554
RsaI	GTAC	2 cut(s)	776, 935
RsaNI	GTAC	2 cut(s)	775, 934
SaqAI	TTAA	2 cut(s)	198, 804
SatI	GCNGC	3 cut(s)	336, 555, 615
Sau3AI	GATC	5 cut(s)	118, 175, 595, 745, 1021
Sau96I	GGNCC	3 cut(s)	600, 845, 890
SchI	GAGTC	4 cut(s)	6, 86, 240, 293
ScrFI	CCNGG	4 cut(s)	503, 578, 720, 851
SduI	GDGCHC	1 cut(s)	994
SfaNI	GCATC	3 cut(s)	10, 264, 557
SfcI	CTRYAG	1 cut(s)	798
SinI	GGWCC	2 cut(s)	845, 890
SmlI	CTYRAG	1 cut(s)	197
SmoI	CTYRAG	1 cut(s)	197
SpeI	ACTAGT	1 cut(s)	662
Sse9I	AATT	6 cut(s)	83, 536, 563, 568, 881, 918
SsiI	CCGC	3 cut(s)	288, 336, 344
SspMI	CTAG	4 cut(s)	491, 663, 855, 1045
StyD4I	CCNGG	4 cut(s)	501, 576, 718, 849
StyI	CCWWGG	3 cut(s)	250, 603, 937
TaaI	ACNGT	1 cut(s)	706
TaqI	TCGA	4 cut(s)	174, 318, 527, 682
TaqII	GACCGA	2 cut(s)	833, 967
TasI	AATT	6 cut(s)	83, 536, 563, 568, 881, 918
TauI	GCSGC	1 cut(s)	338
TfiI	GAWTC	2 cut(s)	158, 626
Tru1I	TTAA	2 cut(s)	198, 804
Tru9I	TTAA	2 cut(s)	198, 804
TseFI	GTSAC	2 cut(s)	241, 700
TseI	GCWGC	2 cut(s)	554, 614
Tsp45I	GTSAC	2 cut(s)	241, 700
TspDTI	ATGAA	5 cut(s)	96, 461, 779, 963, 993
TspGWI	ACGGA	1 cut(s)	638
Vha464I	CTTAAG	1 cut(s)	197
VpaK11BI	GGWCC	2 cut(s)	845, 890
XapI	RAATTY	2 cut(s)	536, 568
XceI	RCATGY	1 cut(s)	219
XmiI	GTMKAC	1 cut(s)	153
XspI	CTAG	4 cut(s)	491, 663, 855, 1045
Zsp2I	ATGCAT	2 cut(s)	103, 217

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.