Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0002967

Physical Location & Seq

Genomic Coordinates Forward (+)

42253172 .. 42257094

Gene Structure 3923 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0339700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 609 bp

ATGTCTCTCGAAAGAGGCAAGGAATTCTCAGGAGGAGAAGGATCGTCATCGGGGTACTCGAGTCCGAGTCCCACTGATCATCATGACCAGCAGCAGCAACCAGCGACGCCCAGCAGGTATGAGTCGCAGAAGAGGAGGGACTGGAACACTTTCGGGCAGTATTTGAAGAACCAGAGGCCCCCAGTCCCTCTCTCCCAGTGCAATTACAGCCATGTCCTCGAGTTCCTCAGGTACCTCGACCAGTTCGGGAAGACCAAAGTCCATCTCCAGGGTTGTATGTTTTACGGCCAGCCGGAGCCACCTGCGCCTTGCACCTGTCCTCTCCGGCAGGCCTGGGGAAGCCTGGATGCTCTCATAGGGAGGCTGAGGGCTGCTTATGAGGAGAACGGTGGGGCCCCTGAGAGCAACCCTTTTGCTAGTGGTGCAATCAGGGTTTACTTGAGGGAGGTCAGGGAGTGTCAGGCCAAGGCTCGAGGGATTCCGTACAAGAAGAAGAAGAAGAAGTCGACGGCGACAACTCCGAGCAGCAGCAGCAGCAGAGGAGGAGGAGGAGGATCTGGAAATAGTGATCGTGATTCTTCAACAAGTTCTATCATGCACTTCTCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006629 GO:0006720 GO:0006721 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0008299 GO:0008610 GO:0009058 GO:0009314 GO:0009416 GO:0009628 GO:0009639 GO:0009685 GO:0009686 GO:0009719 GO:0009725 GO:0009739 GO:0009740 GO:0009755 GO:0009987 GO:0010033 GO:0010114 GO:0010476 GO:0010817 GO:0016053 GO:0016101 GO:0016102 GO:0016114 GO:0016491 GO:0016705 GO:0016706 GO:0016707 GO:0019752 GO:0023052 GO:0032870 GO:0033993 GO:0042221 GO:0042445 GO:0042446 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044283 GO:0044424 GO:0044464 GO:0046394 GO:0050789 GO:0050794 GO:0050896 GO:0051213 GO:0051716 GO:0055114 GO:0065007 GO:0065008 GO:0070887 GO:0071229 GO:0071310 GO:0071370 GO:0071396 GO:0071495 GO:0071704 GO:1901576 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

ko00904 ko01110 map00904 map01110

Pfam Domains

Protein Families

2OG-FeII_Oxy DIOX_N

Protein Analysis

202

Amino Acids

22.2

Weight (kDa)

9.42

Isoelectric Point (pI)

66.91

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ALOG_dom	PF04852	29 - 152	5.9e-67	ALOG domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002967)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G15550 AT1G80340
fragaria_vesca	FvH4_6g30780
malus_domestica	MD02G1263100.v1.1 MD02G1263200.v1.1 MD07G1054800.v1.1 MD09G1217400.v1.1 MD17G1199100.v1.1
prunus_persica	Prupe.2G061700_v2.0.a1 Prupe.3G075600_v2.0.a1
pyrus_communis	pycom07g04260 pycom09g13440 pycom17g20380
rosa_chinensis	RchiOBHm_Chr2g0137231 RchiOBHm_Chr7g0236321
rosa_laevigata	RLG00000001086 RLG00000019636
rosa_multiflora	Rmu_co8273963.1_g000001 Rmu_sc0000894.1_g000034 Rmu_sc0001441.1_g000006 Rmu_sc0009898.1_g000005 Rmu_sc0029248.1_g000002
rosa_roxburghii	Rroxscaffold_2G00107310 Rroxscaffold_3G00225230
rosa_rugosa	Rorug02G0339700 Rorug07G0295900 Rorug07G0296000
rosa_samantha	Rh2AG388500 Rh2BG396100 Rh2CG375900 Rh2DG411200 Rh7AG450800 Rh7BG422300 Rh7CG470400 Rh7CG470500 Rh7DG439800
rosa_wichuraiana	Rw2G031830 Rw7G037480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	310
Acc36I	ACCTGC	2 cut(s)	105, 310
Acc65I	GGTACC	1 cut(s)	231
AccB1I	GGYRCC	1 cut(s)	231
AccI	GTMKAC	1 cut(s)	506
AclWI	GGATC	2 cut(s)	49, 562
AcoI	YGGCCR	1 cut(s)	286
AcsI	RAATTY	1 cut(s)	23
AcyI	GRCGYC	1 cut(s)	107
AfaI	GTAC	3 cut(s)	56, 233, 485
AfiI	CCNNNNNNNGG	1 cut(s)	268
AgsI	TTSAA	2 cut(s)	166, 582
AjnI	CCWGG	3 cut(s)	267, 332, 342
Alw26I	GTCTC	1 cut(s)	9
AlwI	GGATC	2 cut(s)	49, 562
Ama87I	CYCGRG	3 cut(s)	58, 218, 471
AoxI	GGCC	5 cut(s)	176, 286, 330, 393, 462
ApaI	GGGCCC	1 cut(s)	397
ApeKI	GCWGC	7 cut(s)	91, 94, 371, 525, 528, 531, 534
ApoI	RAATTY	1 cut(s)	23
Asp700I	GAANNNNTTC	1 cut(s)	149
Asp718I	GGTACC	1 cut(s)	231
AspLEI	GCGC	1 cut(s)	307
AspS9I	GGNCC	3 cut(s)	177, 393, 394
AvaI	CYCGRG	3 cut(s)	58, 218, 471
AxyI	CCTNAGG	1 cut(s)	227
BaeGI	GKGCMC	1 cut(s)	397
BaeI	ACNNNNGTAYC	2 cut(s)	46, 79
BanI	GGYRCC	1 cut(s)	231
BanII	GRGCYC	1 cut(s)	397
BbsI	GAAGAC	1 cut(s)	257
BbvCI	CCTCAGC	1 cut(s)	365
BbvI	GCAGC	7 cut(s)	103, 106, 358, 537, 540, 543, 546
BccI	CCATC	1 cut(s)	270
BceAI	ACGGC	2 cut(s)	301, 525
BciT130I	CCWGG	3 cut(s)	269, 334, 344
BclI	TGATCA	1 cut(s)	76
BcoDI	GTCTC	1 cut(s)	9
BfaI	CTAG	1 cut(s)	417
BfuAI	ACCTGC	2 cut(s)	105, 310
BisI	GCNGC	7 cut(s)	92, 95, 372, 526, 529, 532, 535
BlsI	GCNGC	7 cut(s)	93, 96, 373, 527, 530, 533, 536
Bme1390I	CCNGG	3 cut(s)	269, 334, 344
BmeT110I	CYCGRG	3 cut(s)	58, 218, 471
BmgT120I	GGNCC	3 cut(s)	177, 393, 394
BmiI	GGNNCC	6 cut(s)	179, 233, 297, 394, 395, 396
BmrFI	CCNGG	3 cut(s)	269, 334, 344
BmrI	ACTGGG	2 cut(s)	176, 190
BmsI	GCATC	1 cut(s)	337
BmuI	ACTGGG	2 cut(s)	176, 190
BoxI	GACNNNNGTC	1 cut(s)	257
BpiI	GAAGAC	1 cut(s)	257
BpmI	CTGGAG	1 cut(s)	251
Bpu10I	CCTNAGC	1 cut(s)	365
BpuEI	CTTGAG	1 cut(s)	460
BsaBI	GATNNNNATC	1 cut(s)	46
BsaHI	GRCGYC	1 cut(s)	107
BsaJI	CCNNGG	3 cut(s)	268, 333, 465
Bsc4I	CCNNNNNNNGG	1 cut(s)	268
Bse1I	ACTGG	4 cut(s)	146, 182, 196, 241
Bse21I	CCTNAGG	1 cut(s)	227
Bse8I	GATNNNNATC	1 cut(s)	46
BseBI	CCWGG	3 cut(s)	269, 334, 344
BseDI	CCNNGG	3 cut(s)	268, 333, 465
BseGI	GGATG	1 cut(s)	352
BseJI	GATNNNNATC	1 cut(s)	46
BseLI	CCNNNNNNNGG	1 cut(s)	268
BseMII	CTCAG	4 cut(s)	42, 241, 356, 390
BseNI	ACTGG	4 cut(s)	146, 182, 196, 241
BseRI	GAGGAG	7 cut(s)	48, 148, 395, 555, 558, 561, 564
BseSI	GKGCMC	1 cut(s)	397
BseXI	GCAGC	7 cut(s)	103, 106, 358, 537, 540, 543, 546
BseYI	CCCAGC	1 cut(s)	110
BshFI	GGCC	5 cut(s)	178, 288, 332, 395, 464
BshNI	GGYRCC	1 cut(s)	231
BsiHKCI	CYCGRG	3 cut(s)	58, 218, 471
BsiSI	CCGG	2 cut(s)	293, 325
BslFI	GGGAC	3 cut(s)	54, 152, 170
BslI	CCNNNNNNNGG	1 cut(s)	268
BsmAI	GTCTC	1 cut(s)	9
BsmFI	GGGAC	3 cut(s)	54, 152, 170
BsnI	GGCC	5 cut(s)	178, 288, 332, 395, 464
BsoBI	CYCGRG	3 cut(s)	58, 218, 471
Bsp120I	GGGCCC	1 cut(s)	393
Bsp1286I	GDGCHC	1 cut(s)	397
Bsp143I	GATC	4 cut(s)	41, 76, 554, 568
BspANI	GGCC	5 cut(s)	178, 288, 332, 395, 464
BspCNI	CTCAG	4 cut(s)	41, 240, 357, 391
BspHI	TCATGA	1 cut(s)	82
BspLI	GGNNCC	6 cut(s)	179, 233, 297, 394, 395, 396
BspMI	ACCTGC	2 cut(s)	105, 310
BspPI	GGATC	2 cut(s)	49, 562
BspT107I	GGYRCC	1 cut(s)	231
BsrI	ACTGG	4 cut(s)	146, 182, 196, 241
BssECI	CCNNGG	3 cut(s)	268, 333, 465
BssMI	GATC	4 cut(s)	41, 76, 554, 568
BssNI	GRCGYC	1 cut(s)	107
BssT1I	CCWWGG	1 cut(s)	465
Bst2UI	CCWGG	3 cut(s)	269, 334, 344
Bst4CI	ACNGT	1 cut(s)	389
Bst6I	CTCTTC	1 cut(s)	125
BstACI	GRCGYC	1 cut(s)	107
BstC8I	GCNNGC	2 cut(s)	290, 330
BstDEI	CTNAG	4 cut(s)	28, 227, 365, 399
BstF5I	GGATG	1 cut(s)	352
BstHHI	GCGC	1 cut(s)	307
BstKTI	GATC	4 cut(s)	44, 79, 557, 571
BstMAI	GTCTC	1 cut(s)	9
BstMBI	GATC	4 cut(s)	41, 76, 554, 568
BstMWI	GCNNNNNNNGC	5 cut(s)	207, 304, 422, 531, 534
BstNI	CCWGG	3 cut(s)	269, 334, 344
BstPAI	GACNNNNGTC	1 cut(s)	257
BstSCI	CCNGG	3 cut(s)	267, 332, 342
BstSLI	GKGCMC	1 cut(s)	397
BstV1I	GCAGC	7 cut(s)	103, 106, 358, 537, 540, 543, 546
BstV2I	GAAGAC	1 cut(s)	257
BstX2I	RGATCY	1 cut(s)	554
BstYI	RGATCY	1 cut(s)	554
Bsu36I	CCTNAGG	1 cut(s)	227
BsuRI	GGCC	5 cut(s)	178, 288, 332, 395, 464
BtsCI	GGATG	1 cut(s)	352
BtsIMutI	CAGTG	2 cut(s)	72, 203
BveI	ACCTGC	2 cut(s)	105, 310
Cac8I	GCNNGC	2 cut(s)	290, 330
CciI	TCATGA	1 cut(s)	82
CfoI	GCGC	1 cut(s)	307
Cfr13I	GGNCC	3 cut(s)	177, 393, 394
CseI	GACGC	1 cut(s)	115
Csp6I	GTAC	3 cut(s)	55, 232, 484
CviAII	CATG	3 cut(s)	83, 212, 595
CviQI	GTAC	3 cut(s)	55, 232, 484
DdeI	CTNAG	4 cut(s)	28, 227, 365, 399
DpnI	GATC	4 cut(s)	43, 78, 556, 570
DpnII	GATC	4 cut(s)	41, 76, 554, 568
EaeI	YGGCCR	1 cut(s)	286
Eam1104I	CTCTTC	1 cut(s)	125
EarI	CTCTTC	1 cut(s)	125
Eco130I	CCWWGG	1 cut(s)	465
Eco147I	AGGCCT	1 cut(s)	332
Eco24I	GRGCYC	1 cut(s)	397
Eco81I	CCTNAGG	1 cut(s)	227
Eco88I	CYCGRG	3 cut(s)	58, 218, 471
EcoO109I	RGGNCCY	3 cut(s)	177, 393, 394
EcoRI	GAATTC	1 cut(s)	23
EcoRII	CCWGG	3 cut(s)	267, 332, 342
EcoT14I	CCWWGG	1 cut(s)	465
EcoT38I	GRGCYC	1 cut(s)	397
ErhI	CCWWGG	1 cut(s)	465
FaeI	CATG	3 cut(s)	86, 215, 598
FaiI	YATR	7 cut(s)	84, 120, 213, 278, 356, 378, 596
FaqI	GGGAC	3 cut(s)	54, 152, 170
FatI	CATG	3 cut(s)	82, 211, 594
FbaI	TGATCA	1 cut(s)	76
FblI	GTMKAC	1 cut(s)	506
Fnu4HI	GCNGC	7 cut(s)	92, 95, 372, 526, 529, 532, 535
FokI	GGATG	1 cut(s)	359
FriOI	GRGCYC	1 cut(s)	397
Fsp4HI	GCNGC	7 cut(s)	92, 95, 372, 526, 529, 532, 535
FspBI	CTAG	1 cut(s)	417
GlaI	GCGC	1 cut(s)	306
GluI	GCNGC	7 cut(s)	92, 95, 372, 526, 529, 532, 535
GsaI	CCCAGC	1 cut(s)	114
GsuI	CTGGAG	1 cut(s)	251
HaeIII	GGCC	5 cut(s)	178, 288, 332, 395, 464
HapII	CCGG	2 cut(s)	293, 325
HgaI	GACGC	1 cut(s)	115
HhaI	GCGC	1 cut(s)	307
Hin1I	GRCGYC	1 cut(s)	107
Hin1II	CATG	3 cut(s)	86, 215, 598
Hin6I	GCGC	1 cut(s)	305
HinP1I	GCGC	1 cut(s)	305
HincII	GTYRAC	1 cut(s)	507
HindII	GTYRAC	1 cut(s)	507
HinfI	GANTC	5 cut(s)	61, 67, 122, 478, 575
HpaII	CCGG	2 cut(s)	293, 325
Hpy166II	GTNNAC	2 cut(s)	436, 507
Hpy188I	TCNGA	2 cut(s)	66, 522
Hpy188III	TCNNGA	7 cut(s)	8, 30, 83, 247, 558, 572, 606
Hpy8I	GTNNAC	2 cut(s)	436, 507
Hpy99I	CGWCG	2 cut(s)	109, 511
HpyAV	CCTTC	1 cut(s)	32
HpyCH4III	ACNGT	1 cut(s)	389
HpyCH4V	TGCA	4 cut(s)	201, 312, 425, 598
HpyF10VI	GCNNNNNNNGC	5 cut(s)	207, 304, 422, 531, 534
HpyF3I	CTNAG	4 cut(s)	28, 227, 365, 399
Hsp92I	GRCGYC	1 cut(s)	107
Hsp92II	CATG	3 cut(s)	86, 215, 598
HspAI	GCGC	1 cut(s)	305
KpnI	GGTACC	1 cut(s)	235
Ksp22I	TGATCA	1 cut(s)	76
Kzo9I	GATC	4 cut(s)	41, 76, 554, 568
LmnI	GCTCC	1 cut(s)	295
Lsp1109I	GCAGC	7 cut(s)	103, 106, 358, 537, 540, 543, 546
LweI	GCATC	1 cut(s)	337
MaeI	CTAG	1 cut(s)	417
MalI	GATC	4 cut(s)	43, 78, 556, 570
MboI	GATC	4 cut(s)	41, 76, 554, 568
MboII	GAAGA	8 cut(s)	142, 178, 262, 502, 505, 508, 511, 570
MflI	RGATCY	1 cut(s)	554
MhlI	GDGCHC	1 cut(s)	397
MluCI	AATT	2 cut(s)	23, 202
MlyI	GAGTC	3 cut(s)	70, 76, 131
MroXI	GAANNNNTTC	1 cut(s)	149
MspI	CCGG	2 cut(s)	293, 325
MspR9I	CCNGG	3 cut(s)	269, 334, 344
MvaI	CCWGG	3 cut(s)	269, 334, 344
MwoI	GCNNNNNNNGC	5 cut(s)	207, 304, 422, 531, 534
NdeII	GATC	4 cut(s)	41, 76, 554, 568
NlaIII	CATG	3 cut(s)	86, 215, 598
NlaIV	GGNNCC	6 cut(s)	179, 233, 297, 394, 395, 396
PaeR7I	CTCGAG	3 cut(s)	58, 218, 471
PagI	TCATGA	1 cut(s)	82
PaqCI	CACCTGC	1 cut(s)	310
PceI	AGGCCT	1 cut(s)	332
PcsI	WCGNNNNNNNCGW	1 cut(s)	56
PdmI	GAANNNNTTC	1 cut(s)	149
PfeI	GAWTC	2 cut(s)	478, 575
PkrI	GCNGC	7 cut(s)	93, 96, 373, 527, 530, 533, 536
PleI	GAGTC	3 cut(s)	69, 75, 130
PpsI	GAGTC	3 cut(s)	69, 75, 130
PshAI	GACNNNNGTC	1 cut(s)	257
Psp6I	CCWGG	3 cut(s)	267, 332, 342
PspFI	CCCAGC	1 cut(s)	110
PspGI	CCWGG	3 cut(s)	267, 332, 342
PspN4I	GGNNCC	6 cut(s)	179, 233, 297, 394, 395, 396
PspOMI	GGGCCC	1 cut(s)	393
PspPI	GGNCC	3 cut(s)	177, 393, 394
PspXI	VCTCGAGB	3 cut(s)	58, 218, 471
PsuI	RGATCY	1 cut(s)	554
RsaI	GTAC	3 cut(s)	56, 233, 485
RsaNI	GTAC	3 cut(s)	55, 232, 484
SalI	GTCGAC	1 cut(s)	505
SatI	GCNGC	7 cut(s)	92, 95, 372, 526, 529, 532, 535
Sau3AI	GATC	4 cut(s)	41, 76, 554, 568
Sau96I	GGNCC	3 cut(s)	177, 393, 394
SchI	GAGTC	3 cut(s)	70, 76, 131
ScrFI	CCNGG	3 cut(s)	269, 334, 344
SduI	GDGCHC	1 cut(s)	397
SetI	ASST	6 cut(s)	119, 233, 237, 304, 317, 450
SfaNI	GCATC	1 cut(s)	337
Sfr274I	CTCGAG	3 cut(s)	58, 218, 471
SlaI	CTCGAG	3 cut(s)	58, 218, 471
SmlI	CTYRAG	4 cut(s)	58, 218, 439, 471
SmoI	CTYRAG	4 cut(s)	58, 218, 439, 471
Sse9I	AATT	2 cut(s)	23, 202
SseBI	AGGCCT	1 cut(s)	332
SspMI	CTAG	1 cut(s)	417
StuI	AGGCCT	1 cut(s)	332
StyD4I	CCNGG	3 cut(s)	267, 332, 342
StyI	CCWWGG	1 cut(s)	465
TaaI	ACNGT	1 cut(s)	389
TaqI	TCGA	6 cut(s)	9, 59, 219, 237, 472, 506
TasI	AATT	2 cut(s)	23, 202
TfiI	GAWTC	2 cut(s)	478, 575
TscAI	CASTG	2 cut(s)	79, 203
TseI	GCWGC	7 cut(s)	91, 94, 371, 525, 528, 531, 534
TspGWI	ACGGA	1 cut(s)	471
TspRI	CASTG	2 cut(s)	79, 203
XapI	RAATTY	1 cut(s)	23
XhoI	CTCGAG	3 cut(s)	58, 218, 471
XmiI	GTMKAC	1 cut(s)	506
XmnI	GAANNNNTTC	1 cut(s)	149
XspI	CTAG	1 cut(s)	417

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.