Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0002967

Physical Location & Seq

Genomic Coordinates Reverse (-)

8438405 .. 8439940

Gene Structure 1536 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00225230.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1068 bp

ATGTCATCAAAACTCACTGATGTCTTTGAATCCCACCCTCTCTATCTCCACCAGGAACACCCTGATGACTTTAAATCATTACATGAATTACCAGATCAGTACAAATGGGCACGAGTCGATGAGTATCCTTCTCTTGATTCACCTACTTTAGAGTCTGTTCCCATTATCGATTTGAACGACCCAAATGCCCTTCAACTCATAGGTCATGCATGTAAAACTTGGGGTATTTTCCAAGTTACAAACCATAAAGTACCGCAAAAACTTGTTGATGACATCGAATCTGCTACTCGATGCCTTTTCACCCTACCTATGGAGCAAAAGCTCAAAGCAGCGCGTCCCCCGACTGGTTTTTCAGGTTATGGGTTTCATCGTATATCTGCCTTCTGTGAAAAGCTCATGTGGTCTGAGGGCTTTACTATTGTTGGGTCACCACTTGAACATTTCCACCAACTTTGGCCTGAAGATTACCTTGAGTTCTGTTCTATTTTTGAAGAATATGAGAAAGAAATGAAAAAGCTTGCGGAGAGGGTAATGTGGCTAATGCTTGGGTCATTAGGCGTCTTCAAGGAAGATGTCAAATGGGCTAACCCAAATAGTGAACTTGAAACTGCATCTGCTGCCTTGCAATTGAATTCTTACCCAGCTTGTCCAGATCCAGATCGAGCCATGGGTCTGGTTGATCATACTGATTCAAATCTCCTCTCAATTGTCCACCAAGGCAACATTAGTGGTTTGCAAGTTCTCCGAGACCAGGGTTGGATCATGATTCCACCAATCCCGGGTGCTCTGGTGATCAACATTGGTGATTTAATTCATATTTTGTCTAATGGTTTGTACCACAATGTCTTCCACCGTGCTGTGGTAAATGGTACTCATCATCGTGTATCAGTTGCTTACCTATACGGACCACCGATAAGTGCAGAAATCTCACCACTTTCAAAATTGGTAGGACCAAGTCATCCTCCCCTCTATCCCTCAGTAACTTGGAAAGAGTACCTTGGCATCAAGGCAAAATTTAACAACAAAACACTTTTATCACTCCGCCTGGATGGCACATCTCCCAAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006629 GO:0006720 GO:0006721 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0008299 GO:0008610 GO:0009058 GO:0009314 GO:0009416 GO:0009628 GO:0009639 GO:0009685 GO:0009686 GO:0009719 GO:0009725 GO:0009739 GO:0009740 GO:0009755 GO:0009987 GO:0010033 GO:0010114 GO:0010476 GO:0010817 GO:0016053 GO:0016101 GO:0016102 GO:0016114 GO:0016491 GO:0016705 GO:0016706 GO:0016707 GO:0019752 GO:0023052 GO:0032870 GO:0033993 GO:0042221 GO:0042445 GO:0042446 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044283 GO:0044424 GO:0044464 GO:0046394 GO:0050789 GO:0050794 GO:0050896 GO:0051213 GO:0051716 GO:0055114 GO:0065007 GO:0065008 GO:0070887 GO:0071229 GO:0071310 GO:0071370 GO:0071396 GO:0071495 GO:0071704 GO:1901576 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

ko00904 ko01110 map00904 map01110

Pfam Domains

Protein Families

2OG-FeII_Oxy DIOX_N

Protein Analysis

355

Amino Acids

40.0

Weight (kDa)

5.84

Isoelectric Point (pI)

35.03

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DIOX_N	PF14226	53 - 154	7.6e-22	non-haem dioxygenase in morphine synthesis N-terminal
2OG-FeII_Oxy	PF03171	206 - 303	9.5e-30	2OG-Fe(II) oxygenase superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002967)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G15550 AT1G80340
fragaria_vesca	FvH4_6g30780
malus_domestica	MD02G1263100.v1.1 MD02G1263200.v1.1 MD07G1054800.v1.1 MD09G1217400.v1.1 MD17G1199100.v1.1
prunus_persica	Prupe.2G061700_v2.0.a1 Prupe.3G075600_v2.0.a1
pyrus_communis	pycom07g04260 pycom09g13440 pycom17g20380
rosa_chinensis	RchiOBHm_Chr2g0137231 RchiOBHm_Chr7g0236321
rosa_laevigata	RLG00000001086 RLG00000019636
rosa_multiflora	Rmu_co8273963.1_g000001 Rmu_sc0000894.1_g000034 Rmu_sc0001441.1_g000006 Rmu_sc0009898.1_g000005 Rmu_sc0029248.1_g000002
rosa_roxburghii	Rroxscaffold_2G00107310 Rroxscaffold_3G00225230
rosa_rugosa	Rorug02G0339700 Rorug07G0295900 Rorug07G0296000
rosa_samantha	Rh2AG388500 Rh2BG396100 Rh2CG375900 Rh2DG411200 Rh7AG450800 Rh7BG422300 Rh7CG470400 Rh7CG470500 Rh7DG439800
rosa_wichuraiana	Rw2G031830 Rw7G037480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	334
AciI	CCGC	3 cut(s)	254, 521, 1042
AclWI	GGATC	2 cut(s)	647, 767
AcsI	RAATTY	2 cut(s)	631, 1013
AcuI	CTGAAG	1 cut(s)	480
AcyI	GRCGYC	1 cut(s)	558
AfaI	GTAC	5 cut(s)	101, 252, 836, 871, 995
AfiI	CCNNNNNNNGG	5 cut(s)	310, 344, 751, 779, 859
AjnI	CCWGG	3 cut(s)	51, 750, 1044
AluBI	AGCT	4 cut(s)	322, 394, 517, 644
AluI	AGCT	4 cut(s)	322, 394, 517, 644
Alw21I	GWGCWC	1 cut(s)	787
Alw26I	GTCTC	1 cut(s)	741
AlwI	GGATC	2 cut(s)	647, 767
Ama87I	CYCGRG	1 cut(s)	778
AoxI	GGCC	1 cut(s)	455
ApeKI	GCWGC	2 cut(s)	329, 617
ApoI	RAATTY	2 cut(s)	631, 1013
AspLEI	GCGC	1 cut(s)	334
AspS9I	GGNCC	2 cut(s)	905, 950
AsuC2I	CCSGG	2 cut(s)	779, 780
AsuHPI	GGTGA	6 cut(s)	132, 292, 420, 802, 815, 921
AvaI	CYCGRG	1 cut(s)	778
AvaII	GGWCC	2 cut(s)	905, 950
BaeGI	GKGCMC	1 cut(s)	112
BauI	CACGAG	1 cut(s)	111
BbsI	GAAGAC	2 cut(s)	553, 838
Bbv12I	GWGCWC	1 cut(s)	787
BbvI	GCAGC	2 cut(s)	341, 604
BccI	CCATC	1 cut(s)	1043
BcgI	CGANNNNNNTGC	2 cut(s)	167, 201
BciT130I	CCWGG	3 cut(s)	53, 752, 1046
BciVI	GTATCC	1 cut(s)	135
BclI	TGATCA	2 cut(s)	679, 792
BcnI	CCSGG	2 cut(s)	779, 780
BcoDI	GTCTC	1 cut(s)	741
BfuI	GTATCC	1 cut(s)	135
BglI	GCCNNNNNGGC	1 cut(s)	1050
BisI	GCNGC	2 cut(s)	330, 618
BlsI	GCNGC	2 cut(s)	331, 619
Bme1390I	CCNGG	5 cut(s)	53, 752, 779, 780, 1046
Bme18I	GGWCC	2 cut(s)	905, 950
BmeT110I	CYCGRG	1 cut(s)	778
BmgT120I	GGNCC	2 cut(s)	905, 950
BmrFI	CCNGG	5 cut(s)	53, 752, 779, 780, 1046
BmsI	GCATC	3 cut(s)	281, 620, 1011
BpiI	GAAGAC	2 cut(s)	553, 838
BpuEI	CTTGAG	1 cut(s)	491
BpuMI	CCSGG	2 cut(s)	779, 780
Bsa29I	ATCGAT	1 cut(s)	168
BsaBI	GATNNNNATC	3 cut(s)	123, 657, 693
BsaHI	GRCGYC	1 cut(s)	558
BsaI	GGTCTC	1 cut(s)	741
BsaJI	CCNNGG	5 cut(s)	666, 715, 751, 778, 997
Bsc4I	CCNNNNNNNGG	5 cut(s)	310, 344, 751, 779, 859
Bse1I	ACTGG	1 cut(s)	349
Bse8I	GATNNNNATC	3 cut(s)	123, 657, 693
BseBI	CCWGG	3 cut(s)	53, 752, 1046
BseCI	ATCGAT	1 cut(s)	168
BseDI	CCNNGG	5 cut(s)	666, 715, 751, 778, 997
BseGI	GGATG	2 cut(s)	958, 1054
BseJI	GATNNNNATC	3 cut(s)	123, 657, 693
BseLI	CCNNNNNNNGG	5 cut(s)	310, 344, 751, 779, 859
BseMII	CTCAG	2 cut(s)	396, 990
BseNI	ACTGG	1 cut(s)	349
BseRI	GAGGAG	1 cut(s)	689
BseSI	GKGCMC	1 cut(s)	112
BseXI	GCAGC	2 cut(s)	341, 604
BseYI	CCCAGC	1 cut(s)	640
BsgI	GTGCAG	1 cut(s)	939
Bsh1236I	CGCG	1 cut(s)	334
BshFI	GGCC	1 cut(s)	457
BshVI	ATCGAT	1 cut(s)	168
BsiHKAI	GWGCWC	1 cut(s)	787
BsiHKCI	CYCGRG	1 cut(s)	778
BsiSI	CCGG	1 cut(s)	779
BslFI	GGGAC	1 cut(s)	321
BslI	CCNNNNNNNGG	5 cut(s)	310, 344, 751, 779, 859
BsmAI	GTCTC	1 cut(s)	741
BsmFI	GGGAC	1 cut(s)	321
BsnI	GGCC	1 cut(s)	457
Bso31I	GGTCTC	1 cut(s)	741
BsoBI	CYCGRG	1 cut(s)	778
Bsp1286I	GDGCHC	2 cut(s)	112, 787
Bsp143I	GATC	6 cut(s)	94, 652, 658, 679, 759, 792
Bsp19I	CCATGG	1 cut(s)	666
BspACI	CCGC	3 cut(s)	254, 521, 1042
BspANI	GGCC	1 cut(s)	457
BspCNI	CTCAG	2 cut(s)	397, 989
BspDI	ATCGAT	1 cut(s)	168
BspFNI	CGCG	1 cut(s)	334
BspHI	TCATGA	1 cut(s)	762
BspPI	GGATC	2 cut(s)	647, 767
BspTNI	GGTCTC	1 cut(s)	741
BsrI	ACTGG	1 cut(s)	349
BssECI	CCNNGG	5 cut(s)	666, 715, 751, 778, 997
BssMI	GATC	6 cut(s)	94, 652, 658, 679, 759, 792
BssNI	GRCGYC	1 cut(s)	558
BssSI	CACGAG	1 cut(s)	111
BssT1I	CCWWGG	3 cut(s)	666, 715, 997
Bst2BI	CACGAG	1 cut(s)	111
Bst2UI	CCWGG	3 cut(s)	53, 752, 1046
Bst4CI	ACNGT	1 cut(s)	854
BstACI	GRCGYC	1 cut(s)	558
BstAPI	GCANNNNNTGC	1 cut(s)	617
BstC8I	GCNNGC	1 cut(s)	519
BstDEI	CTNAG	2 cut(s)	405, 976
BstDSI	CCRYGG	1 cut(s)	666
BstEII	GGTNACC	1 cut(s)	426
BstF5I	GGATG	2 cut(s)	958, 1054
BstFNI	CGCG	1 cut(s)	334
BstHHI	GCGC	1 cut(s)	334
BstKTI	GATC	6 cut(s)	97, 655, 661, 682, 762, 795
BstMAI	GTCTC	1 cut(s)	741
BstMBI	GATC	6 cut(s)	94, 652, 658, 679, 759, 792
BstMWI	GCNNNNNNNGC	2 cut(s)	617, 1050
BstNI	CCWGG	3 cut(s)	53, 752, 1046
BstNSI	RCATGY	1 cut(s)	213
BstPI	GGTNACC	1 cut(s)	426
BstSCI	CCNGG	5 cut(s)	51, 750, 777, 778, 1044
BstSLI	GKGCMC	1 cut(s)	112
BstUI	CGCG	1 cut(s)	334
BstV1I	GCAGC	2 cut(s)	341, 604
BstV2I	GAAGAC	2 cut(s)	553, 838
BstX2I	RGATCY	1 cut(s)	652
BstXI	CCANNNNNNTGG	1 cut(s)	673
BstYI	RGATCY	1 cut(s)	652
Bsu15I	ATCGAT	1 cut(s)	168
BsuI	GTATCC	1 cut(s)	135
BsuRI	GGCC	1 cut(s)	457
BsuTUI	ATCGAT	1 cut(s)	168
BtgI	CCRYGG	1 cut(s)	666
BtsCI	GGATG	2 cut(s)	958, 1054
BtsIMutI	CAGTG	1 cut(s)	15
Cac8I	GCNNGC	1 cut(s)	519
CciI	TCATGA	1 cut(s)	762
CfoI	GCGC	1 cut(s)	334
Cfr13I	GGNCC	2 cut(s)	905, 950
Cfr9I	CCCGGG	1 cut(s)	778
ClaI	ATCGAT	1 cut(s)	168
CseI	GACGC	2 cut(s)	323, 547
Csp6I	GTAC	5 cut(s)	100, 251, 835, 870, 994
CspCI	CAANNNNNGTGG	4 cut(s)	434, 469, 709, 744
CviAII	CATG	6 cut(s)	83, 206, 210, 397, 667, 763
CviJI	RGCY	9 cut(s)	322, 394, 411, 457, 517, 538, 584, 644, 665
CviKI_1	RGCY	9 cut(s)	322, 394, 411, 457, 517, 538, 584, 644, 665
CviQI	GTAC	5 cut(s)	100, 251, 835, 870, 994
DdeI	CTNAG	2 cut(s)	405, 976
DpnI	GATC	6 cut(s)	96, 654, 660, 681, 761, 794
DpnII	GATC	6 cut(s)	94, 652, 658, 679, 759, 792
DraI	TTTAAA	1 cut(s)	73
EciI	GGCGGA	1 cut(s)	1031
Eco130I	CCWWGG	3 cut(s)	666, 715, 997
Eco31I	GGTCTC	1 cut(s)	741
Eco47I	GGWCC	2 cut(s)	905, 950
Eco57I	CTGAAG	1 cut(s)	480
Eco88I	CYCGRG	1 cut(s)	778
Eco91I	GGTNACC	1 cut(s)	426
EcoO65I	GGTNACC	1 cut(s)	426
EcoRI	GAATTC	1 cut(s)	631
EcoRII	CCWGG	3 cut(s)	51, 750, 1044
EcoT14I	CCWWGG	3 cut(s)	666, 715, 997
EcoT22I	ATGCAT	1 cut(s)	211
ErhI	CCWWGG	3 cut(s)	666, 715, 997
FaeI	CATG	6 cut(s)	86, 209, 213, 400, 670, 766
FalI	AAGNNNNNCTT	4 cut(s)	453, 485, 981, 1013
FaqI	GGGAC	1 cut(s)	321
FatI	CATG	6 cut(s)	82, 205, 209, 396, 666, 762
FbaI	TGATCA	2 cut(s)	679, 792
Fnu4HI	GCNGC	2 cut(s)	330, 618
FokI	GGATG	2 cut(s)	945, 1061
Fsp4HI	GCNGC	2 cut(s)	330, 618
GlaI	GCGC	1 cut(s)	333
GluI	GCNGC	2 cut(s)	330, 618
GsaI	CCCAGC	1 cut(s)	644
HaeIII	GGCC	1 cut(s)	457
HapII	CCGG	1 cut(s)	779
HgaI	GACGC	2 cut(s)	323, 547
HhaI	GCGC	1 cut(s)	334
Hin1I	GRCGYC	1 cut(s)	558
Hin1II	CATG	6 cut(s)	86, 209, 213, 400, 670, 766
Hin6I	GCGC	1 cut(s)	332
HinP1I	GCGC	1 cut(s)	332
HindIII	AAGCTT	1 cut(s)	515
HinfI	GANTC	7 cut(s)	29, 114, 137, 152, 278, 689, 766
HpaII	CCGG	1 cut(s)	779
HphI	GGTGA	6 cut(s)	132, 292, 420, 802, 815, 921
Hpy166II	GTNNAC	2 cut(s)	599, 712
Hpy188I	TCNGA	2 cut(s)	406, 746
Hpy188III	TCNNGA	4 cut(s)	134, 650, 656, 763
Hpy8I	GTNNAC	2 cut(s)	599, 712
HpyAV	CCTTC	3 cut(s)	138, 200, 391
HpyCH4III	ACNGT	1 cut(s)	854
HpyCH4V	TGCA	5 cut(s)	209, 611, 625, 736, 920
HpyF10VI	GCNNNNNNNGC	2 cut(s)	617, 1050
HpyF3I	CTNAG	2 cut(s)	405, 976
Hsp92I	GRCGYC	1 cut(s)	558
Hsp92II	CATG	6 cut(s)	86, 209, 213, 400, 670, 766
HspAI	GCGC	1 cut(s)	332
Ksp22I	TGATCA	2 cut(s)	679, 792
Kzo9I	GATC	6 cut(s)	94, 652, 658, 679, 759, 792
LmnI	GCTCC	1 cut(s)	313
Lsp1109I	GCAGC	2 cut(s)	341, 604
LweI	GCATC	3 cut(s)	281, 620, 1011
MaeIII	GTNAC	3 cut(s)	235, 426, 979
MalI	GATC	6 cut(s)	96, 654, 660, 681, 761, 794
MboI	GATC	6 cut(s)	94, 652, 658, 679, 759, 792
MboII	GAAGA	5 cut(s)	473, 503, 553, 581, 838
MfeI	CAATTG	2 cut(s)	626, 705
MflI	RGATCY	1 cut(s)	652
MhlI	GDGCHC	2 cut(s)	112, 787
MluCI	AATT	7 cut(s)	86, 626, 631, 705, 810, 941, 1013
MlyI	GAGTC	2 cut(s)	123, 161
MmeI	TCCRAC	1 cut(s)	737
MnlI	CCTC	7 cut(s)	48, 400, 519, 710, 972, 977, 985
Mph1103I	ATGCAT	1 cut(s)	211
MseI	TTAA	3 cut(s)	72, 809, 1017
MslI	CAYNNNNRTG	2 cut(s)	63, 879
MspI	CCGG	1 cut(s)	779
MspR9I	CCNGG	5 cut(s)	53, 752, 779, 780, 1046
MunI	CAATTG	2 cut(s)	626, 705
MvaI	CCWGG	3 cut(s)	53, 752, 1046
MvnI	CGCG	1 cut(s)	334
MwoI	GCNNNNNNNGC	2 cut(s)	617, 1050
NciI	CCSGG	2 cut(s)	779, 780
NcoI	CCATGG	1 cut(s)	666
NdeII	GATC	6 cut(s)	94, 652, 658, 679, 759, 792
NlaIII	CATG	6 cut(s)	86, 209, 213, 400, 670, 766
NmuCI	GTSAC	1 cut(s)	426
NsiI	ATGCAT	1 cut(s)	211
NspI	RCATGY	1 cut(s)	213
PagI	TCATGA	1 cut(s)	762
PcsI	WCGNNNNNNNCGW	1 cut(s)	174
PfeI	GAWTC	5 cut(s)	29, 137, 278, 689, 766
PflFI	GACNNNGTC	1 cut(s)	954
PkrI	GCNGC	2 cut(s)	331, 619
PleI	GAGTC	2 cut(s)	122, 160
PpsI	GAGTC	2 cut(s)	122, 160
Psp6I	CCWGG	3 cut(s)	51, 750, 1044
PspEI	GGTNACC	1 cut(s)	426
PspFI	CCCAGC	1 cut(s)	640
PspGI	CCWGG	3 cut(s)	51, 750, 1044
PspPI	GGNCC	2 cut(s)	905, 950
PsuI	RGATCY	1 cut(s)	652
PsyI	GACNNNGTC	1 cut(s)	954
RsaI	GTAC	5 cut(s)	101, 252, 836, 871, 995
RsaNI	GTAC	5 cut(s)	100, 251, 835, 870, 994
RseI	CAYNNNNRTG	2 cut(s)	63, 879
SaqAI	TTAA	3 cut(s)	72, 809, 1017
SatI	GCNGC	2 cut(s)	330, 618
Sau3AI	GATC	6 cut(s)	94, 652, 658, 679, 759, 792
Sau96I	GGNCC	2 cut(s)	905, 950
SchI	GAGTC	2 cut(s)	123, 161
ScrFI	CCNGG	5 cut(s)	53, 752, 779, 780, 1046
SduI	GDGCHC	2 cut(s)	112, 787
SfaNI	GCATC	3 cut(s)	281, 620, 1011
SinI	GGWCC	2 cut(s)	905, 950
SmaI	CCCGGG	1 cut(s)	780
SmiMI	CAYNNNNRTG	2 cut(s)	63, 879
SmlI	CTYRAG	1 cut(s)	470
SmoI	CTYRAG	1 cut(s)	470
Sse9I	AATT	7 cut(s)	86, 626, 631, 705, 810, 941, 1013
SsiI	CCGC	3 cut(s)	254, 521, 1042
StyD4I	CCNGG	5 cut(s)	51, 750, 777, 778, 1044
StyI	CCWWGG	3 cut(s)	666, 715, 997
TaaI	ACNGT	1 cut(s)	854
TaqI	TCGA	5 cut(s)	117, 168, 276, 289, 661
TasI	AATT	7 cut(s)	86, 626, 631, 705, 810, 941, 1013
TatI	WGTACW	1 cut(s)	99
TfiI	GAWTC	5 cut(s)	29, 137, 278, 689, 766
Tru1I	TTAA	3 cut(s)	72, 809, 1017
Tru9I	TTAA	3 cut(s)	72, 809, 1017
TscAI	CASTG	1 cut(s)	22
TseFI	GTSAC	1 cut(s)	426
TseI	GCWGC	2 cut(s)	329, 617
Tsp45I	GTSAC	1 cut(s)	426
TspDTI	ATGAA	4 cut(s)	99, 356, 524, 803
TspGWI	ACGGA	1 cut(s)	918
TspMI	CCCGGG	1 cut(s)	778
TspRI	CASTG	1 cut(s)	22
Tth111I	GACNNNGTC	1 cut(s)	954
VpaK11BI	GGWCC	2 cut(s)	905, 950
XapI	RAATTY	2 cut(s)	631, 1013
XceI	RCATGY	1 cut(s)	213
XmaI	CCCGGG	1 cut(s)	778
Zsp2I	ATGCAT	1 cut(s)	211

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.