Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr09

Orthogroup ID

OG0002967

Physical Location & Seq

Genomic Coordinates Reverse (-)

21849098 .. 21851005

Gene Structure 1908 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD09G1217400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1116 bp

ATGCATTTAAAACTTTCTGATGCCTTCAAATCCCACCCTGTCAACCTCCAACTCAAACACCCAGATTTCAACTCATTACATGAATTGCCAGACTCCTATGCATGGACAAACAATGATGATCACTACCCATCTTTCCTAACCTCATTTGGGGCAGACGATTCTGTTCCGGTCATCAATCTCTCTGACACCAATGTTCTTAAGCTCACAGGCCATGCATGTAAGACTTGGGGAGTCTTCCAAGTCACTAACCATGGCATCCAACAGAAGCTTCTTGATGACATTGAATCCGCAGGCAAAAGCCTTTTCTCTCTACCAGTCCAGCAGAAGCTCAAAGCTGCCCGATCGCCAGATGGCATTTCCGGCTATGGTTTTGCTCGGATATCTTCTTTTTTTAAGAAGCTCATGTGGTCGGAGGGTTTCACTATTGTTGGCTCACCAGTTGACCATTTTCGCCAACTTTGGCCCCAAGATTACGACAAATTCTGCAATATCATTGAGGAATATGAGAAGGAAATGAAAATGCTTGCTGGGAGGTTGATGTGGCTTATGCTTGGCTCACTAGGCATATCCATGGAAGATATCAAATGGGCTGGCTCGAAAGGTGAATTCAAAGGTGCATCAGCTGCCTTACAATTGAATTCTTACCCCGCTTGTCCAGAGCCAGATCGGGCCATGGGTTTGGCTGCACATACGGATTCTACCCTCCTCACAATCCTCTACCAAAGCAACACTAGTGGTTTGCAAGTGCTTCGGGAGGGCACCGGGTGGGTCACGGTTCCACCAATGCCCGGTGCTTTGGTGATCAACGTTGGTGATCTCTTCCATATATTATCTAACGGGTTGTACCCAAGTGTCCTTCATCGGGCAGTTGTGAACCGGACCCAACATCGTCTATCTGTCGCTTACTTGTTCGGCCCCCCGGCCAGTATCCAAATCTCACCCCTATCAAAATTAGTAGGTCCAAGTCATCCTCCTCTCTACCGCCCAATTAGTTGGAATGAGTACCTTGGCACTAAAGCAAAGCATTTCAATAAGGCACTTTCATCGGTCAGACTTTGTGCTCCTCTAAATTCATTAGTAGATGTAAATGATCACAACAGCGTAAAAGTCGGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006629 GO:0006720 GO:0006721 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0008299 GO:0008610 GO:0009058 GO:0009314 GO:0009416 GO:0009628 GO:0009639 GO:0009685 GO:0009686 GO:0009719 GO:0009725 GO:0009739 GO:0009740 GO:0009755 GO:0009987 GO:0010033 GO:0010114 GO:0010476 GO:0010817 GO:0016053 GO:0016101 GO:0016102 GO:0016114 GO:0016491 GO:0016705 GO:0016706 GO:0016707 GO:0019752 GO:0023052 GO:0032870 GO:0033993 GO:0042221 GO:0042445 GO:0042446 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044283 GO:0044424 GO:0044464 GO:0046394 GO:0050789 GO:0050794 GO:0050896 GO:0051213 GO:0051716 GO:0055114 GO:0065007 GO:0065008 GO:0070887 GO:0071229 GO:0071310 GO:0071370 GO:0071396 GO:0071495 GO:0071704 GO:1901576 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

ko00904 ko01110 map00904 map01110

Pfam Domains

Protein Families

2OG-FeII_Oxy DIOX_N

Protein Analysis

372

Amino Acids

41.01

Weight (kDa)

7.76

Isoelectric Point (pI)

36.93

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DIOX_N	PF14226	55 - 156	1.2e-20	non-haem dioxygenase in morphine synthesis N-terminal
2OG-FeII_Oxy	PF03171	208 - 306	2.2e-33	2OG-Fe(II) oxygenase superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002967)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G15550 AT1G80340
fragaria_vesca	FvH4_6g30780
malus_domestica	MD02G1263100.v1.1 MD02G1263200.v1.1 MD07G1054800.v1.1 MD09G1217400.v1.1 MD17G1199100.v1.1
prunus_persica	Prupe.2G061700_v2.0.a1 Prupe.3G075600_v2.0.a1
pyrus_communis	pycom07g04260 pycom09g13440 pycom17g20380
rosa_chinensis	RchiOBHm_Chr2g0137231 RchiOBHm_Chr7g0236321
rosa_laevigata	RLG00000001086 RLG00000019636
rosa_multiflora	Rmu_co8273963.1_g000001 Rmu_sc0000894.1_g000034 Rmu_sc0001441.1_g000006 Rmu_sc0009898.1_g000005 Rmu_sc0029248.1_g000002
rosa_roxburghii	Rroxscaffold_2G00107310 Rroxscaffold_3G00225230
rosa_rugosa	Rorug02G0339700 Rorug07G0295900 Rorug07G0296000
rosa_samantha	Rh2AG388500 Rh2BG396100 Rh2CG375900 Rh2DG411200 Rh7AG450800 Rh7BG422300 Rh7CG470400 Rh7CG470500 Rh7DG439800
rosa_wichuraiana	Rw2G031830 Rw7G037480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	758
AciI	CCGC	3 cut(s)	288, 648, 982
AclI	AACGTT	1 cut(s)	807
AcoI	YGGCCR	1 cut(s)	921
AcsI	RAATTY	4 cut(s)	479, 605, 637, 1069
AdeI	CACNNNGTG	1 cut(s)	765
AfaI	GTAC	2 cut(s)	845, 1004
AfiI	CCNNNNNNNGG	4 cut(s)	102, 147, 788, 862
AflII	CTTAAG	1 cut(s)	197
AgsI	TTSAA	6 cut(s)	28, 70, 284, 610, 637, 1030
AhlI	ACTAGT	1 cut(s)	731
AjuI	GAANNNNNNNTTGG	2 cut(s)	252, 284
AluBI	AGCT	6 cut(s)	202, 268, 328, 335, 400, 623
AluI	AGCT	6 cut(s)	202, 268, 328, 335, 400, 623
Alw21I	GWGCWC	1 cut(s)	1063
AoxI	GGCC	5 cut(s)	208, 461, 669, 913, 921
ApeKI	GCWGC	3 cut(s)	335, 623, 683
ApoI	RAATTY	4 cut(s)	479, 605, 637, 1069
AspS9I	GGNCC	5 cut(s)	462, 669, 879, 914, 959
AsuC2I	CCSGG	3 cut(s)	763, 789, 920
AsuHPI	GGTGA	5 cut(s)	426, 614, 811, 824, 930
AvaII	GGWCC	2 cut(s)	879, 959
BaeGI	GKGCMC	1 cut(s)	761
BanI	GGYRCC	1 cut(s)	758
BbsI	GAAGAC	1 cut(s)	226
Bbv12I	GWGCWC	1 cut(s)	1063
BbvI	GCAGC	3 cut(s)	322, 610, 670
BccI	CCATC	2 cut(s)	136, 344
BcgI	CGANNNNNNTGC	4 cut(s)	731, 765, 1026, 1060
BciVI	GTATCC	1 cut(s)	938
BclI	TGATCA	3 cut(s)	118, 801, 1090
BcnI	CCSGG	3 cut(s)	763, 789, 920
BcuI	ACTAGT	1 cut(s)	731
BfaI	CTAG	3 cut(s)	560, 732, 1114
BfrI	CTTAAG	1 cut(s)	197
BfuI	GTATCC	1 cut(s)	938
BisI	GCNGC	3 cut(s)	336, 624, 684
BlsI	GCNGC	3 cut(s)	337, 625, 685
Bme1390I	CCNGG	3 cut(s)	763, 789, 920
Bme18I	GGWCC	2 cut(s)	879, 959
BmgT120I	GGNCC	5 cut(s)	462, 669, 879, 914, 959
BmiI	GGNNCC	5 cut(s)	464, 760, 777, 881, 916
BmrFI	CCNGG	3 cut(s)	763, 789, 920
BmsI	GCATC	3 cut(s)	10, 264, 626
BpiI	GAAGAC	1 cut(s)	226
BpuMI	CCSGG	3 cut(s)	763, 789, 920
BsaJI	CCNNGG	5 cut(s)	250, 570, 672, 918, 1006
BsaWI	WCCGGW	2 cut(s)	166, 876
Bsc4I	CCNNNNNNNGG	4 cut(s)	102, 147, 788, 862
Bse1I	ACTGG	3 cut(s)	314, 437, 924
BseDI	CCNNGG	5 cut(s)	250, 570, 672, 918, 1006
BseGI	GGATG	2 cut(s)	255, 967
BseLI	CCNNNNNNNGG	4 cut(s)	102, 147, 788, 862
BseNI	ACTGG	3 cut(s)	314, 437, 924
BseRI	GAGGAG	3 cut(s)	695, 963, 1053
BseSI	GKGCMC	1 cut(s)	761
BseXI	GCAGC	3 cut(s)	322, 610, 670
BseYI	CCCAGC	1 cut(s)	527
BsgI	GTGCAG	1 cut(s)	669
Bsh1285I	CGRYCG	1 cut(s)	344
BshFI	GGCC	5 cut(s)	210, 463, 671, 915, 923
BshNI	GGYRCC	1 cut(s)	758
BsiEI	CGRYCG	1 cut(s)	344
BsiHKAI	GWGCWC	1 cut(s)	1063
BsiSI	CCGG	6 cut(s)	167, 360, 762, 789, 877, 920
BslI	CCNNNNNNNGG	4 cut(s)	102, 147, 788, 862
BsnI	GGCC	5 cut(s)	210, 463, 671, 915, 923
Bsp1286I	GDGCHC	2 cut(s)	761, 1063
Bsp143I	GATC	6 cut(s)	118, 341, 664, 801, 814, 1090
Bsp19I	CCATGG	3 cut(s)	250, 570, 672
BspACI	CCGC	3 cut(s)	288, 648, 982
BspANI	GGCC	5 cut(s)	210, 463, 671, 915, 923
BspLI	GGNNCC	5 cut(s)	464, 760, 777, 881, 916
BspT107I	GGYRCC	1 cut(s)	758
BspTI	CTTAAG	1 cut(s)	197
BsrI	ACTGG	3 cut(s)	314, 437, 924
BssECI	CCNNGG	5 cut(s)	250, 570, 672, 918, 1006
BssMI	GATC	6 cut(s)	118, 341, 664, 801, 814, 1090
BssT1I	CCWWGG	4 cut(s)	250, 570, 672, 1006
Bst4CI	ACNGT	1 cut(s)	775
Bst6I	CTCTTC	1 cut(s)	824
BstAFI	CTTAAG	1 cut(s)	197
BstAPI	GCANNNNNTGC	1 cut(s)	623
BstC8I	GCNNGC	3 cut(s)	292, 525, 592
BstDSI	CCRYGG	3 cut(s)	250, 570, 672
BstF5I	GGATG	2 cut(s)	255, 967
BstKTI	GATC	6 cut(s)	121, 344, 667, 804, 817, 1093
BstMBI	GATC	6 cut(s)	118, 341, 664, 801, 814, 1090
BstMCI	CGRYCG	1 cut(s)	344
BstMWI	GCNNNNNNNGC	3 cut(s)	360, 561, 623
BstNSI	RCATGY	1 cut(s)	219
BstSCI	CCNGG	3 cut(s)	761, 787, 918
BstSLI	GKGCMC	1 cut(s)	761
BstV1I	GCAGC	3 cut(s)	322, 610, 670
BstV2I	GAAGAC	1 cut(s)	226
BstXI	CCANNNNNNTGG	2 cut(s)	679, 993
BsuI	GTATCC	1 cut(s)	938
BsuRI	GGCC	5 cut(s)	210, 463, 671, 915, 923
BtgI	CCRYGG	3 cut(s)	250, 570, 672
BtsCI	GGATG	2 cut(s)	255, 967
Cac8I	GCNNGC	3 cut(s)	292, 525, 592
Cfr13I	GGNCC	5 cut(s)	462, 669, 879, 914, 959
Csp6I	GTAC	2 cut(s)	844, 1003
CspCI	CAANNNNNGTGG	2 cut(s)	715, 750
CviAII	CATG	8 cut(s)	80, 102, 212, 216, 251, 403, 571, 673
CviQI	GTAC	2 cut(s)	844, 1003
DpnI	GATC	6 cut(s)	120, 343, 666, 803, 816, 1092
DpnII	GATC	6 cut(s)	118, 341, 664, 801, 814, 1090
DraI	TTTAAA	1 cut(s)	9
DraIII	CACNNNGTG	1 cut(s)	765
EaeI	YGGCCR	1 cut(s)	921
Eam1104I	CTCTTC	1 cut(s)	824
EarI	CTCTTC	1 cut(s)	824
Eco130I	CCWWGG	4 cut(s)	250, 570, 672, 1006
Eco32I	GATATC	2 cut(s)	381, 580
Eco47I	GGWCC	2 cut(s)	879, 959
EcoRI	GAATTC	2 cut(s)	605, 637
EcoRV	GATATC	2 cut(s)	381, 580
EcoT14I	CCWWGG	4 cut(s)	250, 570, 672, 1006
EcoT22I	ATGCAT	3 cut(s)	6, 103, 217
ErhI	CCWWGG	4 cut(s)	250, 570, 672, 1006
FaeI	CATG	8 cut(s)	83, 105, 215, 219, 254, 406, 574, 676
FatI	CATG	8 cut(s)	79, 101, 211, 215, 250, 402, 570, 672
FauI	CCCGC	1 cut(s)	655
FbaI	TGATCA	3 cut(s)	118, 801, 1090
Fnu4HI	GCNGC	3 cut(s)	336, 624, 684
FokI	GGATG	2 cut(s)	242, 954
Fsp4HI	GCNGC	3 cut(s)	336, 624, 684
FspBI	CTAG	3 cut(s)	560, 732, 1114
GluI	GCNGC	3 cut(s)	336, 624, 684
GsaI	CCCAGC	1 cut(s)	531
HaeIII	GGCC	5 cut(s)	210, 463, 671, 915, 923
HapII	CCGG	6 cut(s)	167, 360, 762, 789, 877, 920
Hin1II	CATG	8 cut(s)	83, 105, 215, 219, 254, 406, 574, 676
HincII	GTYRAC	2 cut(s)	43, 442
HindII	GTYRAC	2 cut(s)	43, 442
HindIII	AAGCTT	1 cut(s)	266
HinfI	GANTC	5 cut(s)	92, 158, 231, 284, 695
HpaII	CCGG	6 cut(s)	167, 360, 762, 789, 877, 920
HphI	GGTGA	5 cut(s)	426, 614, 811, 824, 930
Hpy166II	GTNNAC	3 cut(s)	43, 442, 874
Hpy188I	TCNGA	5 cut(s)	19, 184, 378, 412, 1052
Hpy188III	TCNNGA	3 cut(s)	272, 656, 752
Hpy8I	GTNNAC	3 cut(s)	43, 442, 874
HpyAV	CCTTC	3 cut(s)	34, 502, 866
HpyCH4III	ACNGT	1 cut(s)	775
HpyCH4IV	ACGT	1 cut(s)	807
HpyCH4V	TGCA	7 cut(s)	4, 101, 215, 486, 617, 686, 742
HpyF10VI	GCNNNNNNNGC	3 cut(s)	360, 561, 623
HpySE526I	ACGT	1 cut(s)	807
Hsp92II	CATG	8 cut(s)	83, 105, 215, 219, 254, 406, 574, 676
Ksp22I	TGATCA	3 cut(s)	118, 801, 1090
Kzo9I	GATC	6 cut(s)	118, 341, 664, 801, 814, 1090
LmnI	GCTCC	1 cut(s)	1066
Lsp1109I	GCAGC	3 cut(s)	322, 610, 670
LweI	GCATC	3 cut(s)	10, 264, 626
MaeI	CTAG	3 cut(s)	560, 732, 1114
MaeII	ACGT	1 cut(s)	807
MaeIII	GTNAC	2 cut(s)	241, 769
MalI	GATC	6 cut(s)	120, 343, 666, 803, 816, 1092
MboI	GATC	6 cut(s)	118, 341, 664, 801, 814, 1090
MboII	GAAGA	4 cut(s)	226, 375, 587, 811
MfeI	CAATTG	1 cut(s)	632
MhlI	GDGCHC	2 cut(s)	761, 1063
MluCI	AATT	8 cut(s)	83, 479, 605, 632, 637, 950, 987, 1069
MlyI	GAGTC	2 cut(s)	86, 240
MmeI	TCCRAC	4 cut(s)	73, 283, 390, 974
Mph1103I	ATGCAT	3 cut(s)	6, 103, 217
MseI	TTAA	3 cut(s)	8, 198, 393
MslI	CAYNNNNRTG	1 cut(s)	569
MspA1I	CMGCKG	1 cut(s)	623
MspCI	CTTAAG	1 cut(s)	197
MspI	CCGG	6 cut(s)	167, 360, 762, 789, 877, 920
MspR9I	CCNGG	3 cut(s)	763, 789, 920
MunI	CAATTG	1 cut(s)	632
MwoI	GCNNNNNNNGC	3 cut(s)	360, 561, 623
NciI	CCSGG	3 cut(s)	763, 789, 920
NcoI	CCATGG	3 cut(s)	250, 570, 672
NdeII	GATC	6 cut(s)	118, 341, 664, 801, 814, 1090
NlaIII	CATG	8 cut(s)	83, 105, 215, 219, 254, 406, 574, 676
NlaIV	GGNNCC	5 cut(s)	464, 760, 777, 881, 916
NmuCI	GTSAC	2 cut(s)	241, 769
NsiI	ATGCAT	3 cut(s)	6, 103, 217
NspI	RCATGY	1 cut(s)	219
PfeI	GAWTC	3 cut(s)	158, 284, 695
PkrI	GCNGC	3 cut(s)	337, 625, 685
Ple19I	CGATCG	1 cut(s)	344
PleI	GAGTC	2 cut(s)	86, 239
PpsI	GAGTC	2 cut(s)	86, 239
Psp1406I	AACGTT	1 cut(s)	807
PspFI	CCCAGC	1 cut(s)	527
PspN4I	GGNNCC	5 cut(s)	464, 760, 777, 881, 916
PspPI	GGNCC	5 cut(s)	462, 669, 879, 914, 959
PvuI	CGATCG	1 cut(s)	344
PvuII	CAGCTG	1 cut(s)	623
RsaI	GTAC	2 cut(s)	845, 1004
RsaNI	GTAC	2 cut(s)	844, 1003
RseI	CAYNNNNRTG	1 cut(s)	569
SaqAI	TTAA	3 cut(s)	8, 198, 393
SatI	GCNGC	3 cut(s)	336, 624, 684
Sau3AI	GATC	6 cut(s)	118, 341, 664, 801, 814, 1090
Sau96I	GGNCC	5 cut(s)	462, 669, 879, 914, 959
SchI	GAGTC	2 cut(s)	86, 240
ScrFI	CCNGG	3 cut(s)	763, 789, 920
SduI	GDGCHC	2 cut(s)	761, 1063
SfaNI	GCATC	3 cut(s)	10, 264, 626
SinI	GGWCC	2 cut(s)	879, 959
SmiMI	CAYNNNNRTG	1 cut(s)	569
SmlI	CTYRAG	1 cut(s)	197
SmoI	CTYRAG	1 cut(s)	197
SpeI	ACTAGT	1 cut(s)	731
Sse9I	AATT	8 cut(s)	83, 479, 605, 632, 637, 950, 987, 1069
SsiI	CCGC	3 cut(s)	288, 648, 982
SspMI	CTAG	3 cut(s)	560, 732, 1114
StyD4I	CCNGG	3 cut(s)	761, 787, 918
StyI	CCWWGG	4 cut(s)	250, 570, 672, 1006
TaaI	ACNGT	1 cut(s)	775
TaiI	ACGT	1 cut(s)	810
TaqI	TCGA	1 cut(s)	596
TaqII	GACCGA	1 cut(s)	1036
TasI	AATT	8 cut(s)	83, 479, 605, 632, 637, 950, 987, 1069
TfiI	GAWTC	3 cut(s)	158, 284, 695
Tru1I	TTAA	3 cut(s)	8, 198, 393
Tru9I	TTAA	3 cut(s)	8, 198, 393
TseFI	GTSAC	2 cut(s)	241, 769
TseI	GCWGC	3 cut(s)	335, 623, 683
Tsp45I	GTSAC	2 cut(s)	241, 769
TspDTI	ATGAA	5 cut(s)	96, 530, 848, 1032, 1062
TspGWI	ACGGA	1 cut(s)	707
Vha464I	CTTAAG	1 cut(s)	197
VpaK11BI	GGWCC	2 cut(s)	879, 959
XapI	RAATTY	4 cut(s)	479, 605, 637, 1069
XceI	RCATGY	1 cut(s)	219
XspI	CTAG	3 cut(s)	560, 732, 1114
Zsp2I	ATGCAT	3 cut(s)	6, 103, 217

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.