Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000007

Orthogroup ID

OG0002967

Physical Location & Seq

Genomic Coordinates Reverse (-)

29106947 .. 29107945

Gene Structure 999 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug07G0296000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 999 bp

ATGCAAAAATATGGCACACCGGAACAGGATGCAATGAGAAGGGATCTAACGATCAATAGTTTGTTCTACAATATCAATACCAAATCAGTTGAAGATTGGACCAACAGAGGCATCAAAGATCTAAAATTCGGGAATATTGCGACTCCTTTGTCACCAAGGGAAACTATTATGGAAGATCCAGTGCATGGTCTGCGAGCTATTCGTATTGGCACAAGGTATAGATTCACACTAGTTGAACAGCTAAAGGAAGCTGCTGCCAGTGATGAAGTGAAGGCAGCTCCTTCAGCTAAAGTTAGCAGAGAGCGAATTGGAGCTGAAATTGATCTCATGATATCTGGAGACCAACCTGTCCAAGCTATGACTTTACTGTGCGACTTCAATTGGTTTTGGTATGTGTTCCGTCTTCATCCTCAGTGTGAGCCGCCATCAGACAGGGCTTGTGTCACCTACTTGGAGTCTATATGTAACCTTATTGGGGTAATTGGGCCGTCTACATTTACTGATGAACAGAGAAGGATCTCCTTTTATGCTGCTATGTTCCTCCCACTTAGGACGACCACGTACAAAGATGAGAGAGTAGAAGAGATTCCTGTAGTGAATTTCATTTTCAGATACTCACTTAAGAGTAAAGTCAGCGATGCAGAAACTGTTATAAAGATACACAATGCAGTGGAAAAGTTCTTGCCTTTGCTTCCGCACTTTGGATCCAGTGGATGTGGCGTGCAACTCCTCGCTGAAGATGATTTGGGAACCAGAGAGTATGTTGATGATCTTTCTGCTACTTCAAAAAAATCACAACGCAGAGTACTGATGGGATTTCTTCTACGAGAAATTAAAGATTTTTGGACAGTTGCATTGCTGCTGTGTTGTTCAGAAGATCCTTTGAACAAGAACCTCACATTAGAGGATCGAACAGCTTTGTTTAGAAAAGTCCAAAGCGCCATAATTGATGATCTAGGTCTTGACAAAGTCATTACTCAGGGGAACGGATATTATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006629 GO:0006720 GO:0006721 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0008299 GO:0008610 GO:0009058 GO:0009314 GO:0009416 GO:0009628 GO:0009639 GO:0009685 GO:0009686 GO:0009719 GO:0009725 GO:0009739 GO:0009740 GO:0009755 GO:0009987 GO:0010033 GO:0010114 GO:0010476 GO:0010817 GO:0016053 GO:0016101 GO:0016102 GO:0016114 GO:0016491 GO:0016705 GO:0016706 GO:0016707 GO:0019752 GO:0023052 GO:0032870 GO:0033993 GO:0042221 GO:0042445 GO:0042446 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044283 GO:0044424 GO:0044464 GO:0046394 GO:0050789 GO:0050794 GO:0050896 GO:0051213 GO:0051716 GO:0055114 GO:0065007 GO:0065008 GO:0070887 GO:0071229 GO:0071310 GO:0071370 GO:0071396 GO:0071495 GO:0071704 GO:1901576 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

ko00904 ko01110 map00904 map01110

Pfam Domains

Protein Families

2OG-FeII_Oxy DIOX_N

Protein Analysis

332

Amino Acids

37.77

Weight (kDa)

5.74

Isoelectric Point (pI)

35.42

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PolyA_pol	PF01743	6 - 46	1.6e-10	Poly A polymerase head domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002967)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G15550 AT1G80340
fragaria_vesca	FvH4_6g30780
malus_domestica	MD02G1263100.v1.1 MD02G1263200.v1.1 MD07G1054800.v1.1 MD09G1217400.v1.1 MD17G1199100.v1.1
prunus_persica	Prupe.2G061700_v2.0.a1 Prupe.3G075600_v2.0.a1
pyrus_communis	pycom07g04260 pycom09g13440 pycom17g20380
rosa_chinensis	RchiOBHm_Chr2g0137231 RchiOBHm_Chr7g0236321
rosa_laevigata	RLG00000001086 RLG00000019636
rosa_multiflora	Rmu_co8273963.1_g000001 Rmu_sc0000894.1_g000034 Rmu_sc0001441.1_g000006 Rmu_sc0009898.1_g000005 Rmu_sc0029248.1_g000002
rosa_roxburghii	Rroxscaffold_2G00107310 Rroxscaffold_3G00225230
rosa_rugosa	Rorug02G0339700 Rorug07G0295900 Rorug07G0296000
rosa_samantha	Rh2AG388500 Rh2BG396100 Rh2CG375900 Rh2DG411200 Rh7AG450800 Rh7BG422300 Rh7CG470400 Rh7CG470500 Rh7DG439800
rosa_wichuraiana	Rw2G031830 Rw7G037480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	653
AasI	GACNNNNNNGTC	2 cut(s)	148, 347
AccB7I	CCANNNNNTGG	1 cut(s)	185
AccI	GTMKAC	1 cut(s)	491
AciI	CCGC	2 cut(s)	422, 695
AclWI	GGATC	7 cut(s)	51, 170, 524, 699, 712, 872, 915
AcsI	RAATTY	2 cut(s)	125, 598
AcuI	CTGAAG	2 cut(s)	267, 756
AfaI	GTAC	2 cut(s)	563, 807
AfiI	CCNNNNNNNGG	3 cut(s)	185, 475, 701
AflII	CTTAAG	1 cut(s)	620
AgsI	TTSAA	5 cut(s)	92, 236, 379, 786, 886
AhlI	ACTAGT	1 cut(s)	229
AluBI	AGCT	8 cut(s)	197, 241, 251, 278, 287, 314, 356, 917
AluI	AGCT	8 cut(s)	197, 241, 251, 278, 287, 314, 356, 917
Alw26I	GTCTC	1 cut(s)	333
AlwI	GGATC	7 cut(s)	51, 170, 524, 699, 712, 872, 915
AlwNI	CAGNNNCTG	1 cut(s)	647
AoxI	GGCC	1 cut(s)	485
ApeKI	GCWGC	5 cut(s)	251, 254, 275, 530, 859
ApoI	RAATTY	2 cut(s)	125, 598
Asp700I	GAANNNNTTC	1 cut(s)	585
AspLEI	GCGC	1 cut(s)	941
AspS9I	GGNCC	2 cut(s)	99, 485
AsuHPI	GGTGA	2 cut(s)	144, 436
AvaII	GGWCC	1 cut(s)	99
BamHI	GGATCC	1 cut(s)	704
BbsI	GAAGAC	1 cut(s)	395
BbvI	GCAGC	5 cut(s)	238, 241, 287, 517, 846
BccI	CCATC	2 cut(s)	433, 805
BceAI	ACGGC	1 cut(s)	472
BcoDI	GTCTC	1 cut(s)	333
BcuI	ACTAGT	1 cut(s)	229
BfaI	CTAG	2 cut(s)	230, 956
BfmI	CTRYAG	1 cut(s)	591
BfoI	RGCGCY	1 cut(s)	942
BfrI	CTTAAG	1 cut(s)	620
BglII	AGATCT	1 cut(s)	118
BisI	GCNGC	6 cut(s)	252, 255, 276, 422, 531, 860
BlsI	GCNGC	6 cut(s)	253, 256, 277, 423, 532, 861
BmcAI	AGTACT	1 cut(s)	807
Bme18I	GGWCC	1 cut(s)	99
BmgT120I	GGNCC	2 cut(s)	99, 485
BmiI	GGNNCC	2 cut(s)	706, 751
BmsI	GCATC	3 cut(s)	19, 120, 628
BpiI	GAAGAC	1 cut(s)	395
BpmI	CTGGAG	1 cut(s)	357
BsaAI	YACGTR	1 cut(s)	561
BsaI	GGTCTC	1 cut(s)	333
BsaJI	CCNNGG	1 cut(s)	155
BsaWI	WCCGGW	1 cut(s)	19
Bsc4I	CCNNNNNNNGG	3 cut(s)	185, 475, 701
Bse1I	ACTGG	3 cut(s)	179, 258, 708
Bse3DI	GCAATG	2 cut(s)	39, 854
BseDI	CCNNGG	1 cut(s)	155
BseGI	GGATG	3 cut(s)	34, 406, 719
BseLI	CCNNNNNNNGG	3 cut(s)	185, 475, 701
BseMI	GCAATG	2 cut(s)	39, 854
BseMII	CTCAG	2 cut(s)	425, 992
BseNI	ACTGG	3 cut(s)	179, 258, 708
BseRI	GAGGAG	1 cut(s)	719
BseXI	GCAGC	5 cut(s)	238, 241, 287, 517, 846
BshFI	GGCC	1 cut(s)	487
BsiSI	CCGG	1 cut(s)	20
BslI	CCNNNNNNNGG	3 cut(s)	185, 475, 701
BsmAI	GTCTC	1 cut(s)	333
BsnI	GGCC	1 cut(s)	487
Bso31I	GGTCTC	1 cut(s)	333
BspACI	CCGC	2 cut(s)	422, 695
BspANI	GGCC	1 cut(s)	487
BspCNI	CTCAG	2 cut(s)	424, 991
BspHI	TCATGA	1 cut(s)	327
BspLI	GGNNCC	2 cut(s)	706, 751
BspPI	GGATC	7 cut(s)	51, 170, 524, 699, 712, 872, 915
BspTI	CTTAAG	1 cut(s)	620
BspTNI	GGTCTC	1 cut(s)	333
BsrDI	GCAATG	2 cut(s)	39, 854
BsrI	ACTGG	3 cut(s)	179, 258, 708
BssECI	CCNNGG	1 cut(s)	155
BssT1I	CCWWGG	1 cut(s)	155
Bst4CI	ACNGT	3 cut(s)	369, 649, 850
Bst6I	CTCTTC	1 cut(s)	576
BstAFI	CTTAAG	1 cut(s)	620
BstAPI	GCANNNNNTGC	1 cut(s)	190
BstBAI	YACGTR	1 cut(s)	561
BstC8I	GCNNGC	2 cut(s)	195, 722
BstDEI	CTNAG	3 cut(s)	411, 548, 978
BstF5I	GGATG	3 cut(s)	34, 406, 719
BstH2I	RGCGCY	1 cut(s)	942
BstHHI	GCGC	1 cut(s)	941
BstMAI	GTCTC	1 cut(s)	333
BstMWI	GCNNNNNNNGC	2 cut(s)	190, 284
BstSFI	CTRYAG	1 cut(s)	591
BstV1I	GCAGC	5 cut(s)	238, 241, 287, 517, 846
BstV2I	GAAGAC	1 cut(s)	395
BstX2I	RGATCY	6 cut(s)	43, 118, 175, 516, 704, 877
BstYI	RGATCY	6 cut(s)	43, 118, 175, 516, 704, 877
BsuRI	GGCC	1 cut(s)	487
BtgZI	GCGATG	1 cut(s)	651
BtsCI	GGATG	3 cut(s)	34, 406, 719
BtsI	GCAGTG	1 cut(s)	675
BtsIMutI	CAGTG	5 cut(s)	186, 265, 419, 675, 715
Cac8I	GCNNGC	2 cut(s)	195, 722
CaiI	CAGNNNCTG	1 cut(s)	647
CciI	TCATGA	1 cut(s)	327
CfoI	GCGC	1 cut(s)	941
Cfr13I	GGNCC	2 cut(s)	99, 485
Csp6I	GTAC	2 cut(s)	562, 806
CviAII	CATG	2 cut(s)	185, 328
CviQI	GTAC	2 cut(s)	562, 806
DdeI	CTNAG	3 cut(s)	411, 548, 978
DrdI	GACNNNNNNGTC	2 cut(s)	148, 347
DseDI	GACNNNNNNGTC	2 cut(s)	148, 347
Eam1104I	CTCTTC	1 cut(s)	576
EarI	CTCTTC	1 cut(s)	576
Eco130I	CCWWGG	1 cut(s)	155
Eco31I	GGTCTC	1 cut(s)	333
Eco32I	GATATC	1 cut(s)	333
Eco47I	GGWCC	1 cut(s)	99
Eco57I	CTGAAG	2 cut(s)	267, 756
EcoRV	GATATC	1 cut(s)	333
EcoT14I	CCWWGG	1 cut(s)	155
ErhI	CCWWGG	1 cut(s)	155
FaeI	CATG	2 cut(s)	188, 331
FatI	CATG	2 cut(s)	184, 327
FblI	GTMKAC	1 cut(s)	491
Fnu4HI	GCNGC	6 cut(s)	252, 255, 276, 422, 531, 860
FokI	GGATG	3 cut(s)	41, 393, 726
Fsp4HI	GCNGC	6 cut(s)	252, 255, 276, 422, 531, 860
FspBI	CTAG	2 cut(s)	230, 956
GlaI	GCGC	1 cut(s)	940
GluI	GCNGC	6 cut(s)	252, 255, 276, 422, 531, 860
GsuI	CTGGAG	1 cut(s)	357
HaeII	RGCGCY	1 cut(s)	942
HaeIII	GGCC	1 cut(s)	487
HapII	CCGG	1 cut(s)	20
HhaI	GCGC	1 cut(s)	941
Hin1II	CATG	2 cut(s)	188, 331
Hin6I	GCGC	1 cut(s)	939
HinP1I	GCGC	1 cut(s)	939
HinfI	GANTC	4 cut(s)	142, 222, 455, 586
HpaII	CCGG	1 cut(s)	20
HphI	GGTGA	2 cut(s)	144, 436
Hpy166II	GTNNAC	1 cut(s)	492
Hpy188I	TCNGA	3 cut(s)	430, 611, 874
Hpy188III	TCNNGA	4 cut(s)	130, 328, 336, 962
Hpy8I	GTNNAC	1 cut(s)	492
HpyAV	CCTTC	4 cut(s)	33, 265, 291, 507
HpyCH4III	ACNGT	3 cut(s)	369, 649, 850
HpyCH4IV	ACGT	1 cut(s)	560
HpyCH4V	TGCA	7 cut(s)	4, 32, 184, 641, 668, 724, 854
HpyF10VI	GCNNNNNNNGC	2 cut(s)	190, 284
HpyF3I	CTNAG	3 cut(s)	411, 548, 978
HpySE526I	ACGT	1 cut(s)	560
Hsp92II	CATG	2 cut(s)	188, 331
HspAI	GCGC	1 cut(s)	939
LmnI	GCTCC	2 cut(s)	283, 311
Lsp1109I	GCAGC	5 cut(s)	238, 241, 287, 517, 846
LweI	GCATC	3 cut(s)	19, 120, 628
MaeI	CTAG	2 cut(s)	230, 956
MaeII	ACGT	1 cut(s)	560
MaeIII	GTNAC	3 cut(s)	150, 442, 464
MboII	GAAGA	7 cut(s)	104, 185, 395, 593, 749, 812, 887
MfeI	CAATTG	1 cut(s)	379
MflI	RGATCY	6 cut(s)	43, 118, 175, 516, 704, 877
MluCI	AATT	8 cut(s)	125, 306, 318, 379, 480, 598, 831, 945
MlyI	GAGTC	2 cut(s)	136, 464
MnlI	CCTC	6 cut(s)	101, 420, 551, 740, 898, 905
MroXI	GAANNNNTTC	1 cut(s)	585
MseI	TTAA	3 cut(s)	621, 834, 997
MspCI	CTTAAG	1 cut(s)	620
MspI	CCGG	1 cut(s)	20
MunI	CAATTG	1 cut(s)	379
MwoI	GCNNNNNNNGC	2 cut(s)	190, 284
NlaIII	CATG	2 cut(s)	188, 331
NlaIV	GGNNCC	2 cut(s)	706, 751
NmuCI	GTSAC	2 cut(s)	150, 442
PagI	TCATGA	1 cut(s)	327
PdmI	GAANNNNTTC	1 cut(s)	585
PfeI	GAWTC	2 cut(s)	222, 586
PflFI	GACNNNGTC	1 cut(s)	968
PflMI	CCANNNNNTGG	1 cut(s)	185
PkrI	GCNGC	6 cut(s)	253, 256, 277, 423, 532, 861
PleI	GAGTC	2 cut(s)	136, 463
PpsI	GAGTC	2 cut(s)	136, 463
Ppu21I	YACGTR	1 cut(s)	561
PsiI	TTATAA	1 cut(s)	653
PspN4I	GGNNCC	2 cut(s)	706, 751
PspPI	GGNCC	2 cut(s)	99, 485
PstNI	CAGNNNCTG	1 cut(s)	647
PsuI	RGATCY	6 cut(s)	43, 118, 175, 516, 704, 877
PsyI	GACNNNGTC	1 cut(s)	968
RsaI	GTAC	2 cut(s)	563, 807
RsaNI	GTAC	2 cut(s)	562, 806
SaqAI	TTAA	3 cut(s)	621, 834, 997
SatI	GCNGC	6 cut(s)	252, 255, 276, 422, 531, 860
Sau96I	GGNCC	2 cut(s)	99, 485
ScaI	AGTACT	1 cut(s)	807
SchI	GAGTC	2 cut(s)	136, 464
SfaNI	GCATC	3 cut(s)	19, 120, 628
SfcI	CTRYAG	1 cut(s)	591
SinI	GGWCC	1 cut(s)	99
SmlI	CTYRAG	1 cut(s)	620
SmoI	CTYRAG	1 cut(s)	620
SpeI	ACTAGT	1 cut(s)	229
Sse9I	AATT	8 cut(s)	125, 306, 318, 379, 480, 598, 831, 945
SsiI	CCGC	2 cut(s)	422, 695
SspI	AATATT	1 cut(s)	136
SspMI	CTAG	2 cut(s)	230, 956
StyI	CCWWGG	1 cut(s)	155
TaaI	ACNGT	3 cut(s)	369, 649, 850
TaiI	ACGT	1 cut(s)	563
TaqI	TCGA	1 cut(s)	910
TasI	AATT	8 cut(s)	125, 306, 318, 379, 480, 598, 831, 945
TatI	WGTACW	1 cut(s)	805
TauI	GCSGC	1 cut(s)	424
TfiI	GAWTC	2 cut(s)	222, 586
Tru1I	TTAA	3 cut(s)	621, 834, 997
Tru9I	TTAA	3 cut(s)	621, 834, 997
TscAI	CASTG	5 cut(s)	186, 265, 419, 675, 715
TseFI	GTSAC	2 cut(s)	150, 442
TseI	GCWGC	5 cut(s)	251, 254, 275, 530, 859
Tsp45I	GTSAC	2 cut(s)	150, 442
TspDTI	ATGAA	4 cut(s)	279, 395, 519, 592
TspGWI	ACGGA	1 cut(s)	389
TspRI	CASTG	5 cut(s)	186, 265, 419, 675, 715
Tth111I	GACNNNGTC	1 cut(s)	968
Van91I	CCANNNNNTGG	1 cut(s)	185
Vha464I	CTTAAG	1 cut(s)	620
VpaK11BI	GGWCC	1 cut(s)	99
XapI	RAATTY	2 cut(s)	125, 598
XmiI	GTMKAC	1 cut(s)	491
XmnI	GAANNNNTTC	1 cut(s)	585
XspI	CTAG	2 cut(s)	230, 956
ZrmI	AGTACT	1 cut(s)	807

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.