AT1G80340

Belongs to the iron ascorbate-dependent oxidoreductase family

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
Physical Location & Seq
Reverse (-)
30200466 .. 30202349
1884 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G80340.1

Sequence Viewer

Length: 1044 bp
ATGAGTTCAACGTTGAGCGATGTGTTTAGATCGCATCCCATTCACATCCCACTCTCAAACCCACCTGACTTCAAATCTCTCCCGGATTCTTACACGTGGACTCCTAAAGATGATCTCCTCTTCTCCGCCTCCGCCTCCGACGAAACCCTGCCGCTCATCGACCTCTCCGATATCCACGTGGCCACTCTTGTGGGCCATGCTTGTACCACGTGGGGAGCGTTCCAGATCACCAACCACGGCGTCCCCTCGCGACTTCTCGACGACATTGAGTTCCTCACCGGAAGTCTTTTCCGGCTTCCCGTACAGCGGAAGCTCAAGGCGGCTCGGTCAGAGAATGGCGTCTCCGGCTACGGCGTAGCTCGTATTGCTTCGTTCTTTAATAAGAAGATGTGGTCCGAAGGTTTCACCGTTATTGGCTCTCCCCTCCACGATTTCCGTAAACTCTGGCCCAGCCACCACCTCAAATACTGTGAAATTATTGAAGAGTATGAAGAACATATGCAAAAGTTGGCAGCCAAGTTGATGTGGTTCGCATTAGGTTCACTGGGAGTTGAAGAAAAGGACATACAATGGGCCGGGCCTAATTCAGACTTTCAAGGAACCCAAGCAGTTATCCAACTAAACCATTATCCAAAATGTCCAGAACCAGACAGAGCCATGGGCCTCGCAGCCCATACAGACTCGACCCTCATGACAATTCTGTACCAGAACAACACCGCCGGTCTCCAAGTTTTCCGGGATGACGTGGGCTGGGTTACCGCGCCACCTGTCCCTGGCTCGCTGGTGGTCAACGTCGGTGACTTGCTCCACATTTTAACCAACGGAATCTTCCCGAGCGTGCTTCACCGAGCCAGGGTTAACCACGTCCGATCTCGGTTCTCAATGGCTTACCTGTGGGGTCCACCATCCGATATAATGATCTCTCCACTTCCCAAACTGGTTGATCCTCTCCAATCTCCTCTCTACCCATCTCTCACTTGGAAACAATACCTTGCTACCAAAGCTACTCATTTTAATCAATCTCTTTCCATTATTAGAAATTAA

Protein Analysis

347

Amino Acids

38.78

Weight (kDa)

6.56

Isoelectric Point (pI)

43.22

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DIOX_N PF14226 50 - 151 3.5e-17 non-haem dioxygenase in morphine synthesis N-terminal
2OG-FeII_Oxy PF03171 203 - 299 4.1e-32 2OG-Fe(II) oxygenase superfamily
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 154
AccII CGCG 2 cut(s) 250, 761
AciI CCGC 7 cut(s) 126, 132, 152, 307, 320, 717, 759
AclI AACGTT 1 cut(s) 11
AclWI GGATC 1 cut(s) 938
AcoI YGGCCR 1 cut(s) 180
AcvI CACGTG 3 cut(s) 96, 178, 210
AcyI GRCGYC 2 cut(s) 240, 339
AfaI GTAC 3 cut(s) 205, 303, 704
AfiI CCNNNNNNNGG 3 cut(s) 306, 773, 853
AflIII ACRYGT 1 cut(s) 93
AgsI TTSAA 5 cut(s) 9, 73, 482, 554, 596
AjiI CACGTC 2 cut(s) 745, 865
AjnI CCWGG 2 cut(s) 772, 851
AjuI GAANNNNNNNTTGG 2 cut(s) 812, 844
AleI CACNNNNGTG 1 cut(s) 188
AluBI AGCT 3 cut(s) 313, 359, 1004
AluI AGCT 3 cut(s) 313, 359, 1004
Alw26I GTCTC 2 cut(s) 346, 728
AlwI GGATC 1 cut(s) 938
Ama87I CYCGRG 1 cut(s) 832
AoxI GGCC 6 cut(s) 180, 193, 446, 573, 578, 661
ApeKI GCWGC 2 cut(s) 512, 668
AspLEI GCGC 1 cut(s) 763
AspS9I GGNCC 7 cut(s) 193, 393, 447, 573, 578, 661, 899
AsuC2I CCSGG 3 cut(s) 83, 577, 737
AsuHPI GGTGA 5 cut(s) 220, 268, 397, 809, 836
AvaI CYCGRG 1 cut(s) 832
AvaII GGWCC 2 cut(s) 393, 899
BalI TGGCCA 1 cut(s) 182
BbrPI CACGTG 3 cut(s) 96, 178, 210
BbvI GCAGC 2 cut(s) 524, 680
BccI CCATC 2 cut(s) 913, 976
BceAI ACGGC 2 cut(s) 253, 367
BciT130I CCWGG 2 cut(s) 774, 853
BcnI CCSGG 3 cut(s) 83, 577, 737
BcoDI GTCTC 2 cut(s) 346, 728
BisI GCNGC 4 cut(s) 152, 321, 513, 669
BlsI GCNGC 4 cut(s) 153, 322, 514, 670
Bme1390I CCNGG 5 cut(s) 83, 577, 737, 774, 853
Bme18I GGWCC 2 cut(s) 393, 899
BmeT110I CYCGRG 1 cut(s) 832
BmgBI CACGTC 2 cut(s) 745, 865
BmgT120I GGNCC 7 cut(s) 193, 393, 447, 573, 578, 661, 899
BmiI GGNNCC 2 cut(s) 601, 900
BmrFI CCNGG 5 cut(s) 83, 577, 737, 774, 853
BmrI ACTGGG 1 cut(s) 554
BmsI GCATC 1 cut(s) 43
BmuI ACTGGG 1 cut(s) 554
BpuEI CTTGAG 1 cut(s) 299
BpuMI CCSGG 3 cut(s) 83, 577, 737
BsaAI YACGTR 3 cut(s) 96, 178, 210
BsaHI GRCGYC 2 cut(s) 240, 339
BsaI GGTCTC 1 cut(s) 728
BsaJI CCNNGG 4 cut(s) 235, 657, 772, 852
BsaWI WCCGGW 1 cut(s) 278
BsaXI ACNNNNNCTCC 2 cut(s) 85, 115
Bsc4I CCNNNNNNNGG 3 cut(s) 306, 773, 853
Bse118I RCCGGY 1 cut(s) 719
Bse1I ACTGG 2 cut(s) 549, 942
BseBI CCWGG 2 cut(s) 774, 853
BseDI CCNNGG 4 cut(s) 235, 657, 772, 852
BseGI GGATG 4 cut(s) 34, 45, 745, 905
BseLI CCNNNNNNNGG 3 cut(s) 306, 773, 853
BseNI ACTGG 2 cut(s) 549, 942
BseRI GAGGAG 2 cut(s) 107, 948
BseXI GCAGC 2 cut(s) 524, 680
BseYI CCCAGC 2 cut(s) 449, 750
Bsh1236I CGCG 2 cut(s) 250, 761
BshFI GGCC 6 cut(s) 182, 195, 448, 575, 580, 663
BsiHKCI CYCGRG 1 cut(s) 832
BsiSI CCGG 7 cut(s) 83, 279, 292, 345, 576, 720, 736
BslFI GGGAC 2 cut(s) 227, 755
BslI CCNNNNNNNGG 3 cut(s) 306, 773, 853
BsmAI GTCTC 2 cut(s) 346, 728
BsmBI CGTCTC 1 cut(s) 346
BsmFI GGGAC 2 cut(s) 227, 755
BsnI GGCC 6 cut(s) 182, 195, 448, 575, 580, 663
Bso31I GGTCTC 1 cut(s) 728
BsoBI CYCGRG 1 cut(s) 832
Bsp143I GATC 6 cut(s) 29, 112, 225, 869, 918, 943
Bsp19I CCATGG 1 cut(s) 657
Bsp68I TCGCGA 1 cut(s) 250
BspACI CCGC 7 cut(s) 126, 132, 152, 307, 320, 717, 759
BspANI GGCC 6 cut(s) 182, 195, 448, 575, 580, 663
BspFNI CGCG 2 cut(s) 250, 761
BspHI TCATGA 1 cut(s) 690
BspLI GGNNCC 2 cut(s) 601, 900
BspPI GGATC 1 cut(s) 938
BspTNI GGTCTC 1 cut(s) 728
BsrBI CCGCTC 1 cut(s) 154
BsrFI RCCGGY 1 cut(s) 719
BsrI ACTGG 2 cut(s) 549, 942
BssAI RCCGGY 1 cut(s) 719
BssECI CCNNGG 4 cut(s) 235, 657, 772, 852
BssMI GATC 6 cut(s) 29, 112, 225, 869, 918, 943
BssNI GRCGYC 2 cut(s) 240, 339
BssT1I CCWWGG 1 cut(s) 657
Bst2UI CCWGG 2 cut(s) 774, 853
Bst4CI ACNGT 2 cut(s) 409, 470
Bst6I CTCTTC 2 cut(s) 125, 477
BstACI GRCGYC 2 cut(s) 240, 339
BstBAI YACGTR 3 cut(s) 96, 178, 210
BstC8I GCNNGC 2 cut(s) 779, 839
BstDSI CCRYGG 2 cut(s) 235, 657
BstEII GGTNACC 1 cut(s) 754
BstF5I GGATG 4 cut(s) 34, 45, 745, 905
BstFNI CGCG 2 cut(s) 250, 761
BstHHI GCGC 1 cut(s) 763
BstKTI GATC 6 cut(s) 32, 115, 228, 872, 921, 946
BstMAI GTCTC 2 cut(s) 346, 728
BstMBI GATC 6 cut(s) 29, 112, 225, 869, 918, 943
BstMWI GCNNNNNNNGC 3 cut(s) 345, 365, 1001
BstNI CCWGG 2 cut(s) 774, 853
BstPI GGTNACC 1 cut(s) 754
BstSCI CCNGG 5 cut(s) 81, 575, 735, 772, 851
BstUI CGCG 2 cut(s) 250, 761
BstV1I GCAGC 2 cut(s) 524, 680
BstXI CCANNNNNNTGG 1 cut(s) 190
BsuRI GGCC 6 cut(s) 182, 195, 448, 575, 580, 663
BtgI CCRYGG 2 cut(s) 235, 657
BtgZI GCGATG 1 cut(s) 33
BtrI CACGTC 2 cut(s) 745, 865
BtsCI GGATG 4 cut(s) 34, 45, 745, 905
BtsIMutI CAGTG 1 cut(s) 542
BtuMI TCGCGA 1 cut(s) 250
Cac8I GCNNGC 2 cut(s) 779, 839
CciI TCATGA 1 cut(s) 690
CfoI GCGC 1 cut(s) 763
Cfr10I RCCGGY 1 cut(s) 719
Cfr13I GGNCC 7 cut(s) 193, 393, 447, 573, 578, 661, 899
CseI GACGC 2 cut(s) 229, 328
Csp6I GTAC 3 cut(s) 204, 302, 703
CviAII CATG 3 cut(s) 197, 658, 691
CviQI GTAC 3 cut(s) 204, 302, 703
DpnI GATC 6 cut(s) 31, 114, 227, 871, 920, 945
DpnII GATC 6 cut(s) 29, 112, 225, 869, 918, 943
EaeI YGGCCR 1 cut(s) 180
Eam1104I CTCTTC 2 cut(s) 125, 477
EarI CTCTTC 2 cut(s) 125, 477
EciI GGCGGA 2 cut(s) 115, 121
Eco130I CCWWGG 1 cut(s) 657
Eco31I GGTCTC 1 cut(s) 728
Eco32I GATATC 1 cut(s) 172
Eco47I GGWCC 2 cut(s) 393, 899
Eco72I CACGTG 3 cut(s) 96, 178, 210
Eco88I CYCGRG 1 cut(s) 832
Eco91I GGTNACC 1 cut(s) 754
EcoO65I GGTNACC 1 cut(s) 754
EcoRII CCWGG 2 cut(s) 772, 851
EcoRV GATATC 1 cut(s) 172
EcoT14I CCWWGG 1 cut(s) 657
ErhI CCWWGG 1 cut(s) 657
Esp3I CGTCTC 1 cut(s) 346
FaeI CATG 3 cut(s) 200, 661, 694
FaiI YATR 9 cut(s) 198, 489, 498, 500, 566, 659, 675, 692, 914
FaqI GGGAC 2 cut(s) 227, 755
FatI CATG 3 cut(s) 196, 657, 690
FauNDI CATATG 1 cut(s) 498
Fnu4HI GCNGC 4 cut(s) 152, 321, 513, 669
FokI GGATG 4 cut(s) 21, 32, 752, 892
Fsp4HI GCNGC 4 cut(s) 152, 321, 513, 669
GlaI GCGC 1 cut(s) 762
GluI GCNGC 4 cut(s) 152, 321, 513, 669
GsaI CCCAGC 2 cut(s) 453, 754
HaeIII GGCC 6 cut(s) 182, 195, 448, 575, 580, 663
HapII CCGG 7 cut(s) 83, 279, 292, 345, 576, 720, 736
HgaI GACGC 2 cut(s) 229, 328
HhaI GCGC 1 cut(s) 763
Hin1I GRCGYC 2 cut(s) 240, 339
Hin1II CATG 3 cut(s) 200, 661, 694
Hin6I GCGC 1 cut(s) 761
HinP1I GCGC 1 cut(s) 761
HincII GTYRAC 2 cut(s) 790, 859
HindII GTYRAC 2 cut(s) 790, 859
HinfI GANTC 4 cut(s) 86, 100, 680, 825
HpaI GTTAAC 1 cut(s) 859
HpaII CCGG 7 cut(s) 83, 279, 292, 345, 576, 720, 736
HphI GGTGA 5 cut(s) 220, 268, 397, 809, 836
Hpy166II GTNNAC 6 cut(s) 99, 440, 542, 790, 859, 902
Hpy188I TCNGA 7 cut(s) 139, 169, 331, 397, 589, 869, 910
Hpy188III TCNNGA 6 cut(s) 223, 249, 257, 641, 691, 832
Hpy8I GTNNAC 6 cut(s) 99, 440, 542, 790, 859, 902
Hpy99I CGWCG 3 cut(s) 143, 263, 797
HpyAV CCTTC 1 cut(s) 392
HpyCH4III ACNGT 2 cut(s) 409, 470
HpyCH4IV ACGT 7 cut(s) 11, 95, 177, 209, 744, 792, 864
HpyCH4V TGCA 1 cut(s) 502
HpyF10VI GCNNNNNNNGC 3 cut(s) 345, 365, 1001
HpySE526I ACGT 7 cut(s) 11, 95, 177, 209, 744, 792, 864
Hsp92I GRCGYC 2 cut(s) 240, 339
Hsp92II CATG 3 cut(s) 200, 661, 694
HspAI GCGC 1 cut(s) 761
KspAI GTTAAC 1 cut(s) 859
Kzo9I GATC 6 cut(s) 29, 112, 225, 869, 918, 943
LmnI GCTCC 2 cut(s) 215, 810
Lsp1109I GCAGC 2 cut(s) 524, 680
LweI GCATC 1 cut(s) 43
MaeII ACGT 7 cut(s) 11, 95, 177, 209, 744, 792, 864
MaeIII GTNAC 2 cut(s) 754, 797
MalI GATC 6 cut(s) 31, 114, 227, 871, 920, 945
MbiI CCGCTC 1 cut(s) 154
MboI GATC 6 cut(s) 29, 112, 225, 869, 918, 943
MboII GAAGA 6 cut(s) 112, 397, 494, 503, 566, 820
MlsI TGGCCA 1 cut(s) 182
MluCI AATT 4 cut(s) 474, 583, 696, 1039
MluNI TGGCCA 1 cut(s) 182
MlyI GAGTC 2 cut(s) 94, 674
MmeI TCCRAC 2 cut(s) 162, 640
Mox20I TGGCCA 1 cut(s) 182
MscI TGGCCA 1 cut(s) 182
MseI TTAA 5 cut(s) 378, 815, 858, 1014, 1042
MslI CAYNNNNRTG 1 cut(s) 188
Msp20I TGGCCA 1 cut(s) 182
MspA1I CMGCKG 1 cut(s) 307
MspI CCGG 7 cut(s) 83, 279, 292, 345, 576, 720, 736
MspR9I CCNGG 5 cut(s) 83, 577, 737, 774, 853
MvaI CCWGG 2 cut(s) 774, 853
MvnI CGCG 2 cut(s) 250, 761
MwoI GCNNNNNNNGC 3 cut(s) 345, 365, 1001
NciI CCSGG 3 cut(s) 83, 577, 737
NcoI CCATGG 1 cut(s) 657
NdeI CATATG 1 cut(s) 498
NdeII GATC 6 cut(s) 29, 112, 225, 869, 918, 943
NlaIII CATG 3 cut(s) 200, 661, 694
NlaIV GGNNCC 2 cut(s) 601, 900
NmuCI GTSAC 1 cut(s) 797
NruI TCGCGA 1 cut(s) 250
OliI CACNNNNGTG 1 cut(s) 188
PagI TCATGA 1 cut(s) 690
PcsI WCGNNNNNNNCGW 2 cut(s) 165, 215
PfeI GAWTC 2 cut(s) 86, 825
PfoI TCCNGGA 2 cut(s) 81, 735
PkrI GCNGC 4 cut(s) 153, 322, 514, 670
PleI GAGTC 2 cut(s) 94, 674
PmaCI CACGTG 3 cut(s) 96, 178, 210
PmlI CACGTG 3 cut(s) 96, 178, 210
PpsI GAGTC 2 cut(s) 94, 674
Ppu21I YACGTR 3 cut(s) 96, 178, 210
Psp1406I AACGTT 1 cut(s) 11
Psp6I CCWGG 2 cut(s) 772, 851
PspCI CACGTG 3 cut(s) 96, 178, 210
PspEI GGTNACC 1 cut(s) 754
PspFI CCCAGC 2 cut(s) 449, 750
PspGI CCWGG 2 cut(s) 772, 851
PspN4I GGNNCC 2 cut(s) 601, 900
PspPI GGNCC 7 cut(s) 193, 393, 447, 573, 578, 661, 899
RruI TCGCGA 1 cut(s) 250
RsaI GTAC 3 cut(s) 205, 303, 704
RsaNI GTAC 3 cut(s) 204, 302, 703
RseI CAYNNNNRTG 1 cut(s) 188
SaqAI TTAA 5 cut(s) 378, 815, 858, 1014, 1042
SatI GCNGC 4 cut(s) 152, 321, 513, 669
Sau3AI GATC 6 cut(s) 29, 112, 225, 869, 918, 943
Sau96I GGNCC 7 cut(s) 193, 393, 447, 573, 578, 661, 899
SchI GAGTC 2 cut(s) 94, 674
ScrFI CCNGG 5 cut(s) 83, 577, 737, 774, 853
SfaNI GCATC 1 cut(s) 43
SinI GGWCC 2 cut(s) 393, 899
SmiMI CAYNNNNRTG 1 cut(s) 188
SmlI CTYRAG 1 cut(s) 314
SmoI CTYRAG 1 cut(s) 314
Sse9I AATT 4 cut(s) 474, 583, 696, 1039
SsiI CCGC 7 cut(s) 126, 132, 152, 307, 320, 717, 759
StyD4I CCNGG 5 cut(s) 81, 575, 735, 772, 851
StyI CCWWGG 1 cut(s) 657
TaaI ACNGT 2 cut(s) 409, 470
TaiI ACGT 7 cut(s) 14, 98, 180, 212, 747, 795, 867
TaqI TCGA 3 cut(s) 159, 258, 683
TaqII GACCGA 1 cut(s) 315
TasI AATT 4 cut(s) 474, 583, 696, 1039
TauI GCSGC 2 cut(s) 154, 323
TfiI GAWTC 2 cut(s) 86, 825
Tru1I TTAA 5 cut(s) 378, 815, 858, 1014, 1042
Tru9I TTAA 5 cut(s) 378, 815, 858, 1014, 1042
TscAI CASTG 1 cut(s) 549
TseFI GTSAC 1 cut(s) 797
TseI GCWGC 2 cut(s) 512, 668
Tsp45I GTSAC 1 cut(s) 797
TspDTI ATGAA 1 cut(s) 504
TspGWI ACGGA 2 cut(s) 425, 837
TspRI CASTG 1 cut(s) 549
VpaK11BI GGWCC 2 cut(s) 393, 899
XcmI CCANNNNNNNNNTGG 1 cut(s) 975
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.