Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0009898.1

Orthogroup ID

OG0002967

Physical Location & Seq

Genomic Coordinates Reverse (-)

23658 .. 24158

Gene Structure 501 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0009898.1_g000005.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 501 bp

atgtcatcaaaactcactgatgtctttgaatcccaccctctctatctccaccaggaacaccctgatgactttaaatcattacatgaattaccagatcagtacaaatggacacgagtcgatgagtatccttctcttgattcacctactttagagtctgtggccatcattgatttgaacgacccaaatgcccttcaactcataggtcatgcatgtaaaacttggggtattttccaagttacaaaccatggagtaccgcaaaaacttgttgatgacatcgaatctgctactcgatgccttttcaccctacctatggagcaaaagctcaaagcagcgcgtcccccgactggtttttcaggttatgggtttcatcgtatatctgccttctgtgaaaagctcatgtggtctgagggctttactattgttgggtcaccactcgaacattttcaccaactttggcctgaagattaccttaagttctggtacttgatcacattcttgtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006629 GO:0006720 GO:0006721 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0008299 GO:0008610 GO:0009058 GO:0009314 GO:0009416 GO:0009628 GO:0009639 GO:0009685 GO:0009686 GO:0009719 GO:0009725 GO:0009739 GO:0009740 GO:0009755 GO:0009987 GO:0010033 GO:0010114 GO:0010476 GO:0010817 GO:0016053 GO:0016101 GO:0016102 GO:0016114 GO:0016491 GO:0016705 GO:0016706 GO:0016707 GO:0019752 GO:0023052 GO:0032870 GO:0033993 GO:0042221 GO:0042445 GO:0042446 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044283 GO:0044424 GO:0044464 GO:0046394 GO:0050789 GO:0050794 GO:0050896 GO:0051213 GO:0051716 GO:0055114 GO:0065007 GO:0065008 GO:0070887 GO:0071229 GO:0071310 GO:0071370 GO:0071396 GO:0071495 GO:0071704 GO:1901576 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

ko00904 ko01110 map00904 map01110

Pfam Domains

Protein Families

2OG-FeII_Oxy DIOX_N

Protein Analysis

166

Amino Acids

19.23

Weight (kDa)

5.36

Isoelectric Point (pI)

30.89

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002967)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G15550 AT1G80340
fragaria_vesca	FvH4_6g30780
malus_domestica	MD02G1263100.v1.1 MD02G1263200.v1.1 MD07G1054800.v1.1 MD09G1217400.v1.1 MD17G1199100.v1.1
prunus_persica	Prupe.2G061700_v2.0.a1 Prupe.3G075600_v2.0.a1
pyrus_communis	pycom07g04260 pycom09g13440 pycom17g20380
rosa_chinensis	RchiOBHm_Chr2g0137231 RchiOBHm_Chr7g0236321
rosa_laevigata	RLG00000001086 RLG00000019636
rosa_multiflora	Rmu_co8273963.1_g000001 Rmu_sc0000894.1_g000034 Rmu_sc0001441.1_g000006 Rmu_sc0009898.1_g000005 Rmu_sc0029248.1_g000002
rosa_roxburghii	Rroxscaffold_2G00107310 Rroxscaffold_3G00225230
rosa_rugosa	Rorug02G0339700 Rorug07G0295900 Rorug07G0296000
rosa_samantha	Rh2AG388500 Rh2BG396100 Rh2CG375900 Rh2DG411200 Rh7AG450800 Rh7BG422300 Rh7CG470400 Rh7CG470500 Rh7DG439800
rosa_wichuraiana	Rw2G031830 Rw7G037480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	334
AciI	CCGC	1 cut(s)	254
AcoI	YGGCCR	1 cut(s)	159
AcuI	CTGAAG	1 cut(s)	480
AfaI	GTAC	3 cut(s)	101, 252, 482
AfiI	CCNNNNNNNGG	2 cut(s)	310, 344
AflII	CTTAAG	1 cut(s)	470
AgsI	TTSAA	3 cut(s)	29, 175, 194
AjnI	CCWGG	1 cut(s)	51
AluBI	AGCT	2 cut(s)	322, 394
AluI	AGCT	2 cut(s)	322, 394
AoxI	GGCC	2 cut(s)	159, 455
ApeKI	GCWGC	1 cut(s)	329
Asp700I	GAANNNNTTC	1 cut(s)	441
AspLEI	GCGC	1 cut(s)	334
AsuHPI	GGTGA	4 cut(s)	132, 292, 420, 437
BalI	TGGCCA	1 cut(s)	161
BauI	CACGAG	1 cut(s)	111
BbvI	GCAGC	1 cut(s)	341
BccI	CCATC	1 cut(s)	170
BcgI	CGANNNNNNTGC	2 cut(s)	167, 201
BciT130I	CCWGG	1 cut(s)	53
BciVI	GTATCC	1 cut(s)	135
BclI	TGATCA	1 cut(s)	486
BfrI	CTTAAG	1 cut(s)	470
BfuI	GTATCC	1 cut(s)	135
BisI	GCNGC	1 cut(s)	330
BlsI	GCNGC	1 cut(s)	331
Bme1390I	CCNGG	1 cut(s)	53
BmrFI	CCNGG	1 cut(s)	53
BmsI	GCATC	1 cut(s)	281
BoxI	GACNNNNGTC	1 cut(s)	113
BsaBI	GATNNNNATC	1 cut(s)	123
BsaJI	CCNNGG	1 cut(s)	244
Bsc4I	CCNNNNNNNGG	2 cut(s)	310, 344
Bse1I	ACTGG	1 cut(s)	349
Bse8I	GATNNNNATC	1 cut(s)	123
BseBI	CCWGG	1 cut(s)	53
BseDI	CCNNGG	1 cut(s)	244
BseJI	GATNNNNATC	1 cut(s)	123
BseLI	CCNNNNNNNGG	2 cut(s)	310, 344
BseMII	CTCAG	1 cut(s)	396
BseNI	ACTGG	1 cut(s)	349
BseXI	GCAGC	1 cut(s)	341
Bsh1236I	CGCG	1 cut(s)	334
BshFI	GGCC	2 cut(s)	161, 457
BslFI	GGGAC	1 cut(s)	321
BslI	CCNNNNNNNGG	2 cut(s)	310, 344
BsmFI	GGGAC	1 cut(s)	321
BsnI	GGCC	2 cut(s)	161, 457
Bsp143I	GATC	2 cut(s)	94, 486
Bsp19I	CCATGG	1 cut(s)	244
BspACI	CCGC	1 cut(s)	254
BspANI	GGCC	2 cut(s)	161, 457
BspCNI	CTCAG	1 cut(s)	397
BspFNI	CGCG	1 cut(s)	334
BspTI	CTTAAG	1 cut(s)	470
BsrI	ACTGG	1 cut(s)	349
BssECI	CCNNGG	1 cut(s)	244
BssMI	GATC	2 cut(s)	94, 486
BssSI	CACGAG	1 cut(s)	111
BssT1I	CCWWGG	1 cut(s)	244
Bst2BI	CACGAG	1 cut(s)	111
Bst2UI	CCWGG	1 cut(s)	53
BstAFI	CTTAAG	1 cut(s)	470
BstDEI	CTNAG	1 cut(s)	405
BstDSI	CCRYGG	1 cut(s)	244
BstEII	GGTNACC	1 cut(s)	426
BstFNI	CGCG	1 cut(s)	334
BstHHI	GCGC	1 cut(s)	334
BstKTI	GATC	2 cut(s)	97, 489
BstMBI	GATC	2 cut(s)	94, 486
BstNI	CCWGG	1 cut(s)	53
BstNSI	RCATGY	1 cut(s)	213
BstPAI	GACNNNNGTC	1 cut(s)	113
BstPI	GGTNACC	1 cut(s)	426
BstSCI	CCNGG	1 cut(s)	51
BstUI	CGCG	1 cut(s)	334
BstV1I	GCAGC	1 cut(s)	341
BsuI	GTATCC	1 cut(s)	135
BsuRI	GGCC	2 cut(s)	161, 457
BtgI	CCRYGG	1 cut(s)	244
BtsIMutI	CAGTG	1 cut(s)	15
CfoI	GCGC	1 cut(s)	334
CseI	GACGC	1 cut(s)	323
Csp6I	GTAC	3 cut(s)	100, 251, 481
CviAII	CATG	5 cut(s)	83, 206, 210, 245, 397
CviJI	RGCY	5 cut(s)	161, 322, 394, 411, 457
CviKI_1	RGCY	5 cut(s)	161, 322, 394, 411, 457
CviQI	GTAC	3 cut(s)	100, 251, 481
DdeI	CTNAG	1 cut(s)	405
DpnI	GATC	2 cut(s)	96, 488
DpnII	GATC	2 cut(s)	94, 486
DraI	TTTAAA	1 cut(s)	73
EaeI	YGGCCR	1 cut(s)	159
Eco130I	CCWWGG	1 cut(s)	244
Eco57I	CTGAAG	1 cut(s)	480
Eco91I	GGTNACC	1 cut(s)	426
EcoO65I	GGTNACC	1 cut(s)	426
EcoRII	CCWGG	1 cut(s)	51
EcoT14I	CCWWGG	1 cut(s)	244
EcoT22I	ATGCAT	1 cut(s)	211
ErhI	CCWWGG	1 cut(s)	244
FaeI	CATG	5 cut(s)	86, 209, 213, 248, 400
FaiI	YATR	9 cut(s)	84, 200, 207, 211, 246, 311, 360, 374, 398
FalI	AAGNNNNNCTT	2 cut(s)	453, 485
FaqI	GGGAC	1 cut(s)	321
FatI	CATG	5 cut(s)	82, 205, 209, 244, 396
FbaI	TGATCA	1 cut(s)	486
Fnu4HI	GCNGC	1 cut(s)	330
Fsp4HI	GCNGC	1 cut(s)	330
GlaI	GCGC	1 cut(s)	333
GluI	GCNGC	1 cut(s)	330
HaeIII	GGCC	2 cut(s)	161, 457
HgaI	GACGC	1 cut(s)	323
HhaI	GCGC	1 cut(s)	334
Hin1II	CATG	5 cut(s)	86, 209, 213, 248, 400
Hin6I	GCGC	1 cut(s)	332
HinP1I	GCGC	1 cut(s)	332
HinfI	GANTC	5 cut(s)	29, 114, 137, 152, 278
HphI	GGTGA	4 cut(s)	132, 292, 420, 437
Hpy188I	TCNGA	1 cut(s)	406
Hpy188III	TCNNGA	1 cut(s)	134
HpyAV	CCTTC	3 cut(s)	138, 200, 391
HpyCH4V	TGCA	1 cut(s)	209
HpyF3I	CTNAG	1 cut(s)	405
Hsp92II	CATG	5 cut(s)	86, 209, 213, 248, 400
HspAI	GCGC	1 cut(s)	332
Ksp22I	TGATCA	1 cut(s)	486
Kzo9I	GATC	2 cut(s)	94, 486
LmnI	GCTCC	1 cut(s)	313
LpnPI	CCDG	8 cut(s)	38, 65, 75, 105, 330, 339, 463, 471
Lsp1109I	GCAGC	1 cut(s)	341
LweI	GCATC	1 cut(s)	281
MaeIII	GTNAC	2 cut(s)	235, 426
MalI	GATC	2 cut(s)	96, 488
MboI	GATC	2 cut(s)	94, 486
MboII	GAAGA	1 cut(s)	473
MlsI	TGGCCA	1 cut(s)	161
MluCI	AATT	1 cut(s)	86
MluNI	TGGCCA	1 cut(s)	161
MlyI	GAGTC	2 cut(s)	123, 161
MnlI	CCTC	2 cut(s)	48, 400
Mox20I	TGGCCA	1 cut(s)	161
Mph1103I	ATGCAT	1 cut(s)	211
MroXI	GAANNNNTTC	1 cut(s)	441
MscI	TGGCCA	1 cut(s)	161
MseI	TTAA	2 cut(s)	72, 471
MslI	CAYNNNNRTG	1 cut(s)	63
Msp20I	TGGCCA	1 cut(s)	161
MspCI	CTTAAG	1 cut(s)	470
MspR9I	CCNGG	1 cut(s)	53
MvaI	CCWGG	1 cut(s)	53
MvnI	CGCG	1 cut(s)	334
NcoI	CCATGG	1 cut(s)	244
NdeII	GATC	2 cut(s)	94, 486
NlaIII	CATG	5 cut(s)	86, 209, 213, 248, 400
NmuCI	GTSAC	1 cut(s)	426
NsiI	ATGCAT	1 cut(s)	211
NspI	RCATGY	1 cut(s)	213
PdmI	GAANNNNTTC	1 cut(s)	441
PfeI	GAWTC	3 cut(s)	29, 137, 278
PkrI	GCNGC	1 cut(s)	331
PleI	GAGTC	2 cut(s)	122, 160
PpsI	GAGTC	2 cut(s)	122, 160
PshAI	GACNNNNGTC	1 cut(s)	113
Psp6I	CCWGG	1 cut(s)	51
PspEI	GGTNACC	1 cut(s)	426
PspGI	CCWGG	1 cut(s)	51
RsaI	GTAC	3 cut(s)	101, 252, 482
RsaNI	GTAC	3 cut(s)	100, 251, 481
RseI	CAYNNNNRTG	1 cut(s)	63
SaqAI	TTAA	2 cut(s)	72, 471
SatI	GCNGC	1 cut(s)	330
Sau3AI	GATC	2 cut(s)	94, 486
SchI	GAGTC	2 cut(s)	123, 161
ScrFI	CCNGG	1 cut(s)	53
SetI	ASST	7 cut(s)	145, 205, 310, 324, 358, 396, 471
SfaNI	GCATC	1 cut(s)	281
SmiMI	CAYNNNNRTG	1 cut(s)	63
SmlI	CTYRAG	1 cut(s)	470
SmoI	CTYRAG	1 cut(s)	470
Sse9I	AATT	1 cut(s)	86
SsiI	CCGC	1 cut(s)	254
StyD4I	CCNGG	1 cut(s)	51
StyI	CCWWGG	1 cut(s)	244
TaqI	TCGA	4 cut(s)	117, 276, 289, 435
TasI	AATT	1 cut(s)	86
TatI	WGTACW	1 cut(s)	99
TfiI	GAWTC	3 cut(s)	29, 137, 278
Tru1I	TTAA	2 cut(s)	72, 471
Tru9I	TTAA	2 cut(s)	72, 471
TscAI	CASTG	1 cut(s)	22
TseFI	GTSAC	1 cut(s)	426
TseI	GCWGC	1 cut(s)	329
Tsp45I	GTSAC	1 cut(s)	426
TspDTI	ATGAA	2 cut(s)	99, 356
TspRI	CASTG	1 cut(s)	22
Vha464I	CTTAAG	1 cut(s)	470
XceI	RCATGY	1 cut(s)	213
XmnI	GAANNNNTTC	1 cut(s)	441
Zsp2I	ATGCAT	1 cut(s)	211

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.