Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr9

Orthogroup ID

OG0002967

Physical Location & Seq

Genomic Coordinates Reverse (-)

12224237 .. 12225665

Gene Structure 1429 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom09g13440.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 837 bp

ATGCATGCAAGACTCTCGGATGCCTTCAAATCCCACCCTGTCAACCTCCAACTCAAACACCCAGATTTCAACTCATTACATGAATTGCCAGACTCCTATGCATGGACAAACAATGATGATCACTACCCATCTTTCCTAACCTCGTTTGGGGCAGACGATTCTGTTCCGGTCATCGATCTCTCTGACACCAATGCTCTTAAGCTCACAGGCCATGCATGTAAGACTTGGGGAGTCTTCCAAGTCACTAACCATGGCATCCCACAGAAGCTTCTTGATGACATTGAATCCGCAGGCAAAAGCCTTTTCTCTCTACCAGTCCAGCAGAAGCTCAAAGCTGCCCGATCGCCAGATGGCATTTCCGGCTATGGTTTTGCTCGGATATCTTCGTTTTTTAAGAAGCTCATGTGGTCGGAGGGTTTCACTATTGTTGGCTCACCAGTTGACCATTTTCGCCAACTTTGGCCCCAAGATTACGACAAATTCTGCAATATCATTGAGGAATATGAGAAAGAAATGAAAATGCTTGCTGGGAGGTTGATGTGGCTTATGCTTGGCTCACTAGGCATATCCATGGAAGATATCAAATGGGCTGGCTCGAAAGGTGAATTCAAAGGTGCATCAGCTGCCTTACAATTGAATTCTTACCCCGCTTGTCCAGAGCCAGATCGATCCATGGGTTTGGCTGCACATACGGATTCTACCCTCCTCACAATCCTCTACCAAAGCAACACTAGTGGTTTGCAAGTGCTTGGGGAGGGCACCGGGTGGGTCACGGTTCCACCAATGCCCGGTGCTTTGGTGATCAACGTTGGTCGATCTCTTCCATATATTATCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006629 GO:0006720 GO:0006721 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0008299 GO:0008610 GO:0009058 GO:0009314 GO:0009416 GO:0009628 GO:0009639 GO:0009685 GO:0009686 GO:0009719 GO:0009725 GO:0009739 GO:0009740 GO:0009755 GO:0009987 GO:0010033 GO:0010114 GO:0010476 GO:0010817 GO:0016053 GO:0016101 GO:0016102 GO:0016114 GO:0016491 GO:0016705 GO:0016706 GO:0016707 GO:0019752 GO:0023052 GO:0032870 GO:0033993 GO:0042221 GO:0042445 GO:0042446 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044283 GO:0044424 GO:0044464 GO:0046394 GO:0050789 GO:0050794 GO:0050896 GO:0051213 GO:0051716 GO:0055114 GO:0065007 GO:0065008 GO:0070887 GO:0071229 GO:0071310 GO:0071370 GO:0071396 GO:0071495 GO:0071704 GO:1901576 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

ko00904 ko01110 map00904 map01110

Pfam Domains

Protein Families

2OG-FeII_Oxy DIOX_N

Protein Analysis

279

Amino Acids

30.68

Weight (kDa)

5.82

Isoelectric Point (pI)

41.42

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002967)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G15550 AT1G80340
fragaria_vesca	FvH4_6g30780
malus_domestica	MD02G1263100.v1.1 MD02G1263200.v1.1 MD07G1054800.v1.1 MD09G1217400.v1.1 MD17G1199100.v1.1
prunus_persica	Prupe.2G061700_v2.0.a1 Prupe.3G075600_v2.0.a1
pyrus_communis	pycom07g04260 pycom09g13440 pycom17g20380
rosa_chinensis	RchiOBHm_Chr2g0137231 RchiOBHm_Chr7g0236321
rosa_laevigata	RLG00000001086 RLG00000019636
rosa_multiflora	Rmu_co8273963.1_g000001 Rmu_sc0000894.1_g000034 Rmu_sc0001441.1_g000006 Rmu_sc0009898.1_g000005 Rmu_sc0029248.1_g000002
rosa_roxburghii	Rroxscaffold_2G00107310 Rroxscaffold_3G00225230
rosa_rugosa	Rorug02G0339700 Rorug07G0295900 Rorug07G0296000
rosa_samantha	Rh2AG388500 Rh2BG396100 Rh2CG375900 Rh2DG411200 Rh7AG450800 Rh7BG422300 Rh7CG470400 Rh7CG470500 Rh7DG439800
rosa_wichuraiana	Rw2G031830 Rw7G037480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	758
AciI	CCGC	2 cut(s)	288, 648
AclI	AACGTT	1 cut(s)	807
AclWI	GGATC	1 cut(s)	663
AcsI	RAATTY	3 cut(s)	479, 605, 637
AdeI	CACNNNGTG	1 cut(s)	765
AfiI	CCNNNNNNNGG	3 cut(s)	102, 147, 788
AflII	CTTAAG	1 cut(s)	197
AgsI	TTSAA	5 cut(s)	28, 70, 284, 610, 637
AhlI	ACTAGT	1 cut(s)	731
AluBI	AGCT	6 cut(s)	202, 268, 328, 335, 400, 623
AluI	AGCT	6 cut(s)	202, 268, 328, 335, 400, 623
AlwI	GGATC	1 cut(s)	663
AoxI	GGCC	2 cut(s)	208, 461
ApeKI	GCWGC	3 cut(s)	335, 623, 683
ApoI	RAATTY	3 cut(s)	479, 605, 637
AspS9I	GGNCC	1 cut(s)	462
AsuC2I	CCSGG	2 cut(s)	763, 789
AsuHPI	GGTGA	3 cut(s)	426, 614, 811
BaeGI	GKGCMC	1 cut(s)	761
BanI	GGYRCC	1 cut(s)	758
BbsI	GAAGAC	1 cut(s)	226
BbvI	GCAGC	3 cut(s)	322, 610, 670
BccI	CCATC	2 cut(s)	136, 344
BcgI	CGANNNNNNTGC	1 cut(s)	31
BclI	TGATCA	2 cut(s)	118, 801
BcnI	CCSGG	2 cut(s)	763, 789
BcuI	ACTAGT	1 cut(s)	731
BfaI	CTAG	2 cut(s)	560, 732
BfrI	CTTAAG	1 cut(s)	197
BisI	GCNGC	3 cut(s)	336, 624, 684
BlsI	GCNGC	3 cut(s)	337, 625, 685
Bme1390I	CCNGG	2 cut(s)	763, 789
BmgT120I	GGNCC	1 cut(s)	462
BmiI	GGNNCC	3 cut(s)	464, 760, 777
BmrFI	CCNGG	2 cut(s)	763, 789
BmsI	GCATC	3 cut(s)	10, 264, 626
BpiI	GAAGAC	1 cut(s)	226
BpuMI	CCSGG	2 cut(s)	763, 789
Bsa29I	ATCGAT	2 cut(s)	174, 667
BsaJI	CCNNGG	3 cut(s)	250, 570, 672
BsaWI	WCCGGW	1 cut(s)	166
Bsc4I	CCNNNNNNNGG	3 cut(s)	102, 147, 788
Bse1I	ACTGG	2 cut(s)	314, 437
BseCI	ATCGAT	2 cut(s)	174, 667
BseDI	CCNNGG	3 cut(s)	250, 570, 672
BseGI	GGATG	2 cut(s)	25, 255
BseLI	CCNNNNNNNGG	3 cut(s)	102, 147, 788
BseNI	ACTGG	2 cut(s)	314, 437
BseRI	GAGGAG	1 cut(s)	695
BseSI	GKGCMC	1 cut(s)	761
BseXI	GCAGC	3 cut(s)	322, 610, 670
BseYI	CCCAGC	1 cut(s)	527
BsgI	GTGCAG	1 cut(s)	669
Bsh1285I	CGRYCG	1 cut(s)	344
BshFI	GGCC	2 cut(s)	210, 463
BshNI	GGYRCC	1 cut(s)	758
BshVI	ATCGAT	2 cut(s)	174, 667
BsiEI	CGRYCG	1 cut(s)	344
BsiSI	CCGG	4 cut(s)	167, 360, 762, 789
BslI	CCNNNNNNNGG	3 cut(s)	102, 147, 788
BsnI	GGCC	2 cut(s)	210, 463
Bsp1286I	GDGCHC	1 cut(s)	761
Bsp143I	GATC	7 cut(s)	118, 175, 341, 664, 668, 801, 815
Bsp19I	CCATGG	3 cut(s)	250, 570, 672
BspACI	CCGC	2 cut(s)	288, 648
BspANI	GGCC	2 cut(s)	210, 463
BspDI	ATCGAT	2 cut(s)	174, 667
BspLI	GGNNCC	3 cut(s)	464, 760, 777
BspPI	GGATC	1 cut(s)	663
BspT107I	GGYRCC	1 cut(s)	758
BspTI	CTTAAG	1 cut(s)	197
BsrI	ACTGG	2 cut(s)	314, 437
BssECI	CCNNGG	3 cut(s)	250, 570, 672
BssMI	GATC	7 cut(s)	118, 175, 341, 664, 668, 801, 815
BssT1I	CCWWGG	3 cut(s)	250, 570, 672
Bst4CI	ACNGT	1 cut(s)	775
Bst6I	CTCTTC	1 cut(s)	825
BstAFI	CTTAAG	1 cut(s)	197
BstAPI	GCANNNNNTGC	1 cut(s)	623
BstC8I	GCNNGC	4 cut(s)	6, 292, 525, 592
BstDSI	CCRYGG	3 cut(s)	250, 570, 672
BstF5I	GGATG	2 cut(s)	25, 255
BstKTI	GATC	7 cut(s)	121, 178, 344, 667, 671, 804, 818
BstMBI	GATC	7 cut(s)	118, 175, 341, 664, 668, 801, 815
BstMCI	CGRYCG	1 cut(s)	344
BstMWI	GCNNNNNNNGC	3 cut(s)	360, 561, 623
BstNSI	RCATGY	2 cut(s)	8, 219
BstSCI	CCNGG	2 cut(s)	761, 787
BstSLI	GKGCMC	1 cut(s)	761
BstV1I	GCAGC	3 cut(s)	322, 610, 670
BstV2I	GAAGAC	1 cut(s)	226
BstXI	CCANNNNNNTGG	1 cut(s)	679
Bsu15I	ATCGAT	2 cut(s)	174, 667
BsuRI	GGCC	2 cut(s)	210, 463
BsuTUI	ATCGAT	2 cut(s)	174, 667
BtgI	CCRYGG	3 cut(s)	250, 570, 672
BtsCI	GGATG	2 cut(s)	25, 255
Cac8I	GCNNGC	4 cut(s)	6, 292, 525, 592
Cfr13I	GGNCC	1 cut(s)	462
ClaI	ATCGAT	2 cut(s)	174, 667
CspCI	CAANNNNNGTGG	2 cut(s)	715, 750
CviAII	CATG	9 cut(s)	5, 80, 102, 212, 216, 251, 403, 571, 673
DpnI	GATC	7 cut(s)	120, 177, 343, 666, 670, 803, 817
DpnII	GATC	7 cut(s)	118, 175, 341, 664, 668, 801, 815
DraIII	CACNNNGTG	1 cut(s)	765
Eam1104I	CTCTTC	1 cut(s)	825
EarI	CTCTTC	1 cut(s)	825
Eco130I	CCWWGG	3 cut(s)	250, 570, 672
Eco32I	GATATC	2 cut(s)	381, 580
EcoRI	GAATTC	2 cut(s)	605, 637
EcoRV	GATATC	2 cut(s)	381, 580
EcoT14I	CCWWGG	3 cut(s)	250, 570, 672
EcoT22I	ATGCAT	3 cut(s)	6, 103, 217
ErhI	CCWWGG	3 cut(s)	250, 570, 672
FaeI	CATG	9 cut(s)	8, 83, 105, 215, 219, 254, 406, 574, 676
FatI	CATG	9 cut(s)	4, 79, 101, 211, 215, 250, 402, 570, 672
FauI	CCCGC	1 cut(s)	655
FbaI	TGATCA	2 cut(s)	118, 801
Fnu4HI	GCNGC	3 cut(s)	336, 624, 684
FokI	GGATG	2 cut(s)	32, 242
Fsp4HI	GCNGC	3 cut(s)	336, 624, 684
FspBI	CTAG	2 cut(s)	560, 732
GluI	GCNGC	3 cut(s)	336, 624, 684
GsaI	CCCAGC	1 cut(s)	531
HaeIII	GGCC	2 cut(s)	210, 463
HapII	CCGG	4 cut(s)	167, 360, 762, 789
Hin1II	CATG	9 cut(s)	8, 83, 105, 215, 219, 254, 406, 574, 676
HincII	GTYRAC	2 cut(s)	43, 442
HindII	GTYRAC	2 cut(s)	43, 442
HindIII	AAGCTT	1 cut(s)	266
HinfI	GANTC	6 cut(s)	12, 92, 158, 231, 284, 695
HpaII	CCGG	4 cut(s)	167, 360, 762, 789
HphI	GGTGA	3 cut(s)	426, 614, 811
Hpy166II	GTNNAC	2 cut(s)	43, 442
Hpy188I	TCNGA	4 cut(s)	19, 184, 378, 412
Hpy188III	TCNNGA	2 cut(s)	272, 656
Hpy8I	GTNNAC	2 cut(s)	43, 442
HpyAV	CCTTC	1 cut(s)	34
HpyCH4III	ACNGT	1 cut(s)	775
HpyCH4IV	ACGT	1 cut(s)	807
HpyCH4V	TGCA	8 cut(s)	4, 8, 101, 215, 486, 617, 686, 742
HpyF10VI	GCNNNNNNNGC	3 cut(s)	360, 561, 623
HpySE526I	ACGT	1 cut(s)	807
Hsp92II	CATG	9 cut(s)	8, 83, 105, 215, 219, 254, 406, 574, 676
Ksp22I	TGATCA	2 cut(s)	118, 801
Kzo9I	GATC	7 cut(s)	118, 175, 341, 664, 668, 801, 815
Lsp1109I	GCAGC	3 cut(s)	322, 610, 670
LweI	GCATC	3 cut(s)	10, 264, 626
MaeI	CTAG	2 cut(s)	560, 732
MaeII	ACGT	1 cut(s)	807
MaeIII	GTNAC	2 cut(s)	241, 769
MalI	GATC	7 cut(s)	120, 177, 343, 666, 670, 803, 817
MboI	GATC	7 cut(s)	118, 175, 341, 664, 668, 801, 815
MboII	GAAGA	4 cut(s)	226, 375, 587, 812
MfeI	CAATTG	1 cut(s)	632
MhlI	GDGCHC	1 cut(s)	761
MluCI	AATT	5 cut(s)	83, 479, 605, 632, 637
MlyI	GAGTC	3 cut(s)	6, 86, 240
MmeI	TCCRAC	2 cut(s)	73, 390
MnlI	CCTC	9 cut(s)	56, 151, 406, 490, 525, 713, 716, 725, 748
Mph1103I	ATGCAT	3 cut(s)	6, 103, 217
MseI	TTAA	2 cut(s)	198, 393
MslI	CAYNNNNRTG	1 cut(s)	569
MspA1I	CMGCKG	1 cut(s)	623
MspCI	CTTAAG	1 cut(s)	197
MspI	CCGG	4 cut(s)	167, 360, 762, 789
MspR9I	CCNGG	2 cut(s)	763, 789
MunI	CAATTG	1 cut(s)	632
MwoI	GCNNNNNNNGC	3 cut(s)	360, 561, 623
NciI	CCSGG	2 cut(s)	763, 789
NcoI	CCATGG	3 cut(s)	250, 570, 672
NdeII	GATC	7 cut(s)	118, 175, 341, 664, 668, 801, 815
NlaIII	CATG	9 cut(s)	8, 83, 105, 215, 219, 254, 406, 574, 676
NlaIV	GGNNCC	3 cut(s)	464, 760, 777
NmuCI	GTSAC	2 cut(s)	241, 769
NsiI	ATGCAT	3 cut(s)	6, 103, 217
NspI	RCATGY	2 cut(s)	8, 219
PaeI	GCATGC	1 cut(s)	8
PfeI	GAWTC	3 cut(s)	158, 284, 695
PkrI	GCNGC	3 cut(s)	337, 625, 685
Ple19I	CGATCG	1 cut(s)	344
PleI	GAGTC	3 cut(s)	6, 86, 239
PpsI	GAGTC	3 cut(s)	6, 86, 239
Psp1406I	AACGTT	1 cut(s)	807
PspFI	CCCAGC	1 cut(s)	527
PspN4I	GGNNCC	3 cut(s)	464, 760, 777
PspPI	GGNCC	1 cut(s)	462
PvuI	CGATCG	1 cut(s)	344
PvuII	CAGCTG	1 cut(s)	623
RseI	CAYNNNNRTG	1 cut(s)	569
SaqAI	TTAA	2 cut(s)	198, 393
SatI	GCNGC	3 cut(s)	336, 624, 684
Sau3AI	GATC	7 cut(s)	118, 175, 341, 664, 668, 801, 815
Sau96I	GGNCC	1 cut(s)	462
SchI	GAGTC	3 cut(s)	6, 86, 240
ScrFI	CCNGG	2 cut(s)	763, 789
SduI	GDGCHC	1 cut(s)	761
SfaNI	GCATC	3 cut(s)	10, 264, 626
SmiMI	CAYNNNNRTG	1 cut(s)	569
SmlI	CTYRAG	1 cut(s)	197
SmoI	CTYRAG	1 cut(s)	197
SpeI	ACTAGT	1 cut(s)	731
SphI	GCATGC	1 cut(s)	8
Sse9I	AATT	5 cut(s)	83, 479, 605, 632, 637
SsiI	CCGC	2 cut(s)	288, 648
SspMI	CTAG	2 cut(s)	560, 732
StyD4I	CCNGG	2 cut(s)	761, 787
StyI	CCWWGG	3 cut(s)	250, 570, 672
TaaI	ACNGT	1 cut(s)	775
TaiI	ACGT	1 cut(s)	810
TaqI	TCGA	4 cut(s)	174, 596, 667, 814
TasI	AATT	5 cut(s)	83, 479, 605, 632, 637
TfiI	GAWTC	3 cut(s)	158, 284, 695
Tru1I	TTAA	2 cut(s)	198, 393
Tru9I	TTAA	2 cut(s)	198, 393
TseFI	GTSAC	2 cut(s)	241, 769
TseI	GCWGC	3 cut(s)	335, 623, 683
Tsp45I	GTSAC	2 cut(s)	241, 769
TspDTI	ATGAA	2 cut(s)	96, 530
TspGWI	ACGGA	1 cut(s)	707
Vha464I	CTTAAG	1 cut(s)	197
XapI	RAATTY	3 cut(s)	479, 605, 637
XceI	RCATGY	2 cut(s)	8, 219
XspI	CTAG	2 cut(s)	560, 732
Zsp2I	ATGCAT	3 cut(s)	6, 103, 217

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.