Rw2G031830

Belongs to the iron ascorbate-dependent oxidoreductase family

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr2
Physical Location & Seq
Reverse (-)
52192126 .. 52193630
1505 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw2G031830.1

Sequence Viewer

Length: 1050 bp
ATGCCTGTAAGAATCTCCGATGCCTTTCAATCCCACCCCCATAAGCACTACCCTGCAGACTTCAACTCACTGCACGAGTTACCAGACTCATATGCATGGACTCATCAACTCGACGAGTACCCATCTCTGGACTCGTCATTCGGCTCAGAGCTGTGTGTTCCGATCATCGATCTAACTCACCAAAATGTCCTTAAACTCACAGGACATGCATGTAAAACATGGGGGGTGTTCCAAGTCACAAACCATGGAATCCCAGAGAAGCTTCTTCATGACATTGAATCAACTTGTCGAAGCCTCTTCTCTCTGCCAGTCCAGCAGAAGCTCAAAGCCGCTCGACCGGCGGATGGCATTTCTGGTTACGGAATCCATCGTATATCTTCGTTTTTCCAAAAACTCATGTGGTCGGAGGGCTTTACTATTGCTGGCTCACCACTTGAACATTTTCGACAACTTTGGCCCCAAGATTACAACAAATTCTGTTGTATGGTAGAAGAATATGAGAAAGAGATGAAAAGGCTAGCAGGGAAGCTGATGTGGCTAATATTGGGATCGCTGGGCATACCAAAGGAAGACGTAATTTGGGCCGGCCCAAAAGGTGACTTTGAAGATGCATCCAATGCCATACAATTAAATTCTTACCCTGCATGTCCGGATCCCAATCGTGCCATGGGGTTGGCCGAACATACGGATTCAACCCTCCTGTCAATCATCCACCAAACCAACATAAGTGGCTTGCAAGTTCTTCATGAGGGCGCCGGGTGGCTCACTGTTCCGCCAGTCCCGGGAGCTTTGGTGGTCAACATTGGCGACCTTACTCATATCTTGTCCAACGGGGTGTACCACAATTCAACAACGTTATCCATTGCTTACCTATATGGGCCACCAGCTAGTGTCCAAATCTCGCCCCAGTCGAAACTAGTCACCCCAAGTCACCCTCCCCTTTATCGGCCAATCACTTGGAAGGAGTACCTTGCAATCAAAGGAAAACTTTACAACAAGGCACTTTCAACAATTAAGCTTTATGATCCTCTAAATGACCAAATGGATTAG

Protein Analysis

349

Amino Acids

38.98

Weight (kDa)

6.17

Isoelectric Point (pI)

44.31

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DIOX_N PF14226 53 - 154 3.2e-21 non-haem dioxygenase in morphine synthesis N-terminal
2OG-FeII_Oxy PF03171 207 - 281 1e-22 2OG-Fe(II) oxygenase superfamily
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 752
AccBSI CCGCTC 1 cut(s) 332
AccIII TCCGGA 1 cut(s) 649
AciI CCGC 3 cut(s) 330, 341, 773
AclI AACGTT 1 cut(s) 854
AclWI GGATC 4 cut(s) 556, 647, 660, 1019
AcoI YGGCCR 2 cut(s) 675, 947
AcsI RAATTY 2 cut(s) 473, 631
AcyI GRCGYC 1 cut(s) 753
AfaI GTAC 3 cut(s) 119, 839, 968
AfiI CCNNNNNNNGG 4 cut(s) 127, 344, 782, 945
AgsI TTSAA 8 cut(s) 29, 64, 278, 437, 605, 693, 849, 1008
AhlI ACTAGT 1 cut(s) 916
AluBI AGCT 7 cut(s) 151, 262, 322, 529, 788, 887, 1018
AluI AGCT 7 cut(s) 151, 262, 322, 529, 788, 887, 1018
AlwI GGATC 4 cut(s) 556, 647, 660, 1019
Ama87I CYCGRG 1 cut(s) 781
Aor13HI TCCGGA 1 cut(s) 649
AoxI GGCC 6 cut(s) 455, 582, 586, 675, 878, 947
ApoI RAATTY 2 cut(s) 473, 631
ArsI GACNNNNNNTTYG 2 cut(s) 122, 154
Asp700I GAANNNNTTC 1 cut(s) 441
AspLEI GCGC 1 cut(s) 755
AspS9I GGNCC 4 cut(s) 456, 582, 587, 878
AsuC2I CCSGG 3 cut(s) 757, 782, 783
AsuHPI GGTGA 5 cut(s) 170, 420, 608, 913, 923
AsuNHI GCTAGC 1 cut(s) 517
AvaI CYCGRG 1 cut(s) 781
BamHI GGATCC 1 cut(s) 652
BanI GGYRCC 1 cut(s) 752
BauI CACGAG 1 cut(s) 74
BbsI GAAGAC 1 cut(s) 576
BccI CCATC 3 cut(s) 130, 338, 375
BcnI CCSGG 3 cut(s) 757, 782, 783
BcuI ACTAGT 1 cut(s) 916
BfaI CTAG 3 cut(s) 518, 888, 917
BfmI CTRYAG 1 cut(s) 54
BfoI RGCGCY 1 cut(s) 756
BisI GCNGC 1 cut(s) 330
BlsI GCNGC 1 cut(s) 331
Bme1390I CCNGG 3 cut(s) 757, 782, 783
BmeT110I CYCGRG 1 cut(s) 781
BmgT120I GGNCC 4 cut(s) 456, 582, 587, 878
BmiI GGNNCC 3 cut(s) 458, 654, 754
BmrFI CCNGG 3 cut(s) 757, 782, 783
BmrI ACTGGG 1 cut(s) 901
BmsI GCATC 3 cut(s) 10, 598, 620
BmtI GCTAGC 1 cut(s) 521
BmuI ACTGGG 1 cut(s) 901
BpiI GAAGAC 1 cut(s) 576
BpuMI CCSGG 3 cut(s) 757, 782, 783
Bsa29I ATCGAT 1 cut(s) 168
BsaBI GATNNNNATC 1 cut(s) 657
BsaHI GRCGYC 1 cut(s) 753
BsaJI CCNNGG 3 cut(s) 244, 666, 781
BsaWI WCCGGW 1 cut(s) 649
BsaXI ACNNNNNCTCC 2 cut(s) 777, 807
Bsc4I CCNNNNNNNGG 4 cut(s) 127, 344, 782, 945
Bse118I RCCGGY 2 cut(s) 337, 584
Bse1I ACTGG 3 cut(s) 308, 776, 907
Bse3DI GCAATG 1 cut(s) 861
Bse8I GATNNNNATC 1 cut(s) 657
BseAI TCCGGA 1 cut(s) 649
BseCI ATCGAT 1 cut(s) 168
BseDI CCNNGG 3 cut(s) 244, 666, 781
BseGI GGATG 3 cut(s) 349, 611, 708
BseJI GATNNNNATC 1 cut(s) 657
BseLI CCNNNNNNNGG 4 cut(s) 127, 344, 782, 945
BseMI GCAATG 1 cut(s) 861
BseMII CTCAG 1 cut(s) 159
BseNI ACTGG 3 cut(s) 308, 776, 907
BseYI CCCAGC 1 cut(s) 553
BsgI GTGCAG 1 cut(s) 56
Bsh1285I CGRYCG 1 cut(s) 338
BshFI GGCC 6 cut(s) 457, 584, 588, 677, 880, 949
BshNI GGYRCC 1 cut(s) 752
BshVI ATCGAT 1 cut(s) 168
BsiEI CGRYCG 1 cut(s) 338
BsiHKCI CYCGRG 1 cut(s) 781
BsiSI CCGG 5 cut(s) 338, 585, 650, 756, 782
BslFI GGGAC 1 cut(s) 764
BslI CCNNNNNNNGG 4 cut(s) 127, 344, 782, 945
BsmFI GGGAC 1 cut(s) 764
BsnI GGCC 6 cut(s) 457, 584, 588, 677, 880, 949
BsoBI CYCGRG 1 cut(s) 781
Bsp13I TCCGGA 1 cut(s) 649
Bsp143I GATC 5 cut(s) 162, 169, 548, 652, 1024
Bsp19I CCATGG 2 cut(s) 244, 666
BspACI CCGC 3 cut(s) 330, 341, 773
BspANI GGCC 6 cut(s) 457, 584, 588, 677, 880, 949
BspCNI CTCAG 1 cut(s) 158
BspDI ATCGAT 1 cut(s) 168
BspEI TCCGGA 1 cut(s) 649
BspHI TCATGA 2 cut(s) 268, 745
BspLI GGNNCC 3 cut(s) 458, 654, 754
BspMAI CTGCAG 1 cut(s) 58
BspOI GCTAGC 1 cut(s) 521
BspPI GGATC 4 cut(s) 556, 647, 660, 1019
BspT107I GGYRCC 1 cut(s) 752
BsrBI CCGCTC 1 cut(s) 332
BsrDI GCAATG 1 cut(s) 861
BsrFI RCCGGY 2 cut(s) 337, 584
BsrI ACTGG 3 cut(s) 308, 776, 907
BssAI RCCGGY 2 cut(s) 337, 584
BssECI CCNNGG 3 cut(s) 244, 666, 781
BssMI GATC 5 cut(s) 162, 169, 548, 652, 1024
BssNI GRCGYC 1 cut(s) 753
BssSI CACGAG 1 cut(s) 74
BssT1I CCWWGG 2 cut(s) 244, 666
Bst2BI CACGAG 1 cut(s) 74
Bst4CI ACNGT 1 cut(s) 769
Bst6I CTCTTC 1 cut(s) 302
BstACI GRCGYC 1 cut(s) 753
BstAPI GCANNNNNTGC 1 cut(s) 617
BstC8I GCNNGC 4 cut(s) 424, 519, 586, 734
BstDEI CTNAG 1 cut(s) 145
BstDSI CCRYGG 2 cut(s) 244, 666
BstF5I GGATG 3 cut(s) 349, 611, 708
BstH2I RGCGCY 1 cut(s) 756
BstHHI GCGC 1 cut(s) 755
BstKTI GATC 5 cut(s) 165, 172, 551, 655, 1027
BstMBI GATC 5 cut(s) 162, 169, 548, 652, 1024
BstMCI CGRYCG 1 cut(s) 338
BstMWI GCNNNNNNNGC 4 cut(s) 313, 338, 535, 617
BstNSI RCATGY 3 cut(s) 209, 213, 648
BstSCI CCNGG 3 cut(s) 755, 780, 781
BstSFI CTRYAG 1 cut(s) 54
BstV2I GAAGAC 1 cut(s) 576
BstX2I RGATCY 1 cut(s) 652
BstXI CCANNNNNNTGG 2 cut(s) 673, 957
BstYI RGATCY 1 cut(s) 652
Bsu15I ATCGAT 1 cut(s) 168
BsuRI GGCC 6 cut(s) 457, 584, 588, 677, 880, 949
BsuTUI ATCGAT 1 cut(s) 168
BtgI CCRYGG 2 cut(s) 244, 666
BtsCI GGATG 3 cut(s) 349, 611, 708
BtsI GCAGTG 1 cut(s) 68
BtsIMutI CAGTG 2 cut(s) 68, 765
Cac8I GCNNGC 4 cut(s) 424, 519, 586, 734
CciI TCATGA 2 cut(s) 268, 745
CfoI GCGC 1 cut(s) 755
Cfr10I RCCGGY 2 cut(s) 337, 584
Cfr13I GGNCC 4 cut(s) 456, 582, 587, 878
Cfr9I CCCGGG 1 cut(s) 781
ClaI ATCGAT 1 cut(s) 168
Csp6I GTAC 3 cut(s) 118, 838, 967
CspCI CAANNNNNGTGG 2 cut(s) 709, 744
CviQI GTAC 3 cut(s) 118, 838, 967
DdeI CTNAG 1 cut(s) 145
DinI GGCGCC 1 cut(s) 754
DpnI GATC 5 cut(s) 164, 171, 550, 654, 1026
DpnII GATC 5 cut(s) 162, 169, 548, 652, 1024
EaeI YGGCCR 2 cut(s) 675, 947
Eam1104I CTCTTC 1 cut(s) 302
EarI CTCTTC 1 cut(s) 302
EciI GGCGGA 2 cut(s) 356, 762
Eco130I CCWWGG 2 cut(s) 244, 666
Eco88I CYCGRG 1 cut(s) 781
EcoT14I CCWWGG 2 cut(s) 244, 666
EcoT22I ATGCAT 3 cut(s) 97, 211, 613
EgeI GGCGCC 1 cut(s) 754
EheI GGCGCC 1 cut(s) 754
ErhI CCWWGG 2 cut(s) 244, 666
FalI AAGNNNNNCTT 2 cut(s) 972, 1004
FaqI GGGAC 1 cut(s) 764
FauNDI CATATG 1 cut(s) 91
Fnu4HI GCNGC 1 cut(s) 330
FokI GGATG 3 cut(s) 356, 598, 695
FseI GGCCGGCC 1 cut(s) 588
Fsp4HI GCNGC 1 cut(s) 330
FspBI CTAG 3 cut(s) 518, 888, 917
GlaI GCGC 1 cut(s) 754
GluI GCNGC 1 cut(s) 330
GsaI CCCAGC 1 cut(s) 557
HaeII RGCGCY 1 cut(s) 756
HaeIII GGCC 6 cut(s) 457, 584, 588, 677, 880, 949
HapII CCGG 5 cut(s) 338, 585, 650, 756, 782
HhaI GCGC 1 cut(s) 755
Hin1I GRCGYC 1 cut(s) 753
Hin6I GCGC 1 cut(s) 753
HinP1I GCGC 1 cut(s) 753
HincII GTYRAC 1 cut(s) 799
HindII GTYRAC 1 cut(s) 799
HindIII AAGCTT 2 cut(s) 260, 1016
HinfI GANTC 8 cut(s) 12, 86, 100, 131, 249, 278, 363, 689
HpaII CCGG 5 cut(s) 338, 585, 650, 756, 782
HphI GGTGA 5 cut(s) 170, 420, 608, 913, 923
Hpy166II GTNNAC 2 cut(s) 799, 838
Hpy188I TCNGA 4 cut(s) 19, 148, 162, 406
Hpy188III TCNNGA 4 cut(s) 128, 269, 650, 746
Hpy8I GTNNAC 2 cut(s) 799, 838
Hpy99I CGWCG 1 cut(s) 116
HpyAV CCTTC 1 cut(s) 955
HpyCH4III ACNGT 1 cut(s) 769
HpyCH4IV ACGT 2 cut(s) 573, 854
HpyCH4V TGCA 8 cut(s) 56, 73, 95, 209, 611, 644, 736, 974
HpyF10VI GCNNNNNNNGC 4 cut(s) 313, 338, 535, 617
HpyF3I CTNAG 1 cut(s) 145
HpySE526I ACGT 2 cut(s) 573, 854
Hsp92I GRCGYC 1 cut(s) 753
HspAI GCGC 1 cut(s) 753
KasI GGCGCC 1 cut(s) 752
Kpn2I TCCGGA 1 cut(s) 649
KroI GCCGGC 1 cut(s) 584
KroNI GCCGGC 1 cut(s) 586
Kzo9I GATC 5 cut(s) 162, 169, 548, 652, 1024
LmnI GCTCC 1 cut(s) 785
LweI GCATC 3 cut(s) 10, 598, 620
MaeI CTAG 3 cut(s) 518, 888, 917
MaeII ACGT 2 cut(s) 573, 854
MaeIII GTNAC 6 cut(s) 78, 235, 356, 596, 919, 929
MalI GATC 5 cut(s) 164, 171, 550, 654, 1026
MbiI CCGCTC 1 cut(s) 332
MboI GATC 5 cut(s) 162, 169, 548, 652, 1024
MboII GAAGA 7 cut(s) 257, 289, 369, 503, 581, 617, 734
MflI RGATCY 1 cut(s) 652
MluCI AATT 6 cut(s) 473, 576, 626, 631, 844, 1011
Mly113I GGCGCC 1 cut(s) 753
MlyI GAGTC 3 cut(s) 80, 94, 125
MmeI TCCRAC 2 cut(s) 384, 852
MnlI CCTC 6 cut(s) 305, 400, 707, 742, 945, 1038
Mph1103I ATGCAT 3 cut(s) 97, 211, 613
MroI TCCGGA 1 cut(s) 649
MroNI GCCGGC 1 cut(s) 584
MroXI GAANNNNTTC 1 cut(s) 441
MseI TTAA 3 cut(s) 192, 629, 1014
MslI CAYNNNNRTG 2 cut(s) 94, 183
MspI CCGG 5 cut(s) 338, 585, 650, 756, 782
MspR9I CCNGG 3 cut(s) 757, 782, 783
MwoI GCNNNNNNNGC 4 cut(s) 313, 338, 535, 617
NaeI GCCGGC 1 cut(s) 586
NarI GGCGCC 1 cut(s) 753
NciI CCSGG 3 cut(s) 757, 782, 783
NcoI CCATGG 2 cut(s) 244, 666
NdeI CATATG 1 cut(s) 91
NdeII GATC 5 cut(s) 162, 169, 548, 652, 1024
NgoMIV GCCGGC 1 cut(s) 584
NheI GCTAGC 1 cut(s) 517
NlaIV GGNNCC 3 cut(s) 458, 654, 754
NmuCI GTSAC 4 cut(s) 235, 596, 919, 929
NsiI ATGCAT 3 cut(s) 97, 211, 613
NspI RCATGY 3 cut(s) 209, 213, 648
PagI TCATGA 2 cut(s) 268, 745
PcsI WCGNNNNNNNCGW 1 cut(s) 908
PdiI GCCGGC 1 cut(s) 586
PdmI GAANNNNTTC 1 cut(s) 441
PfeI GAWTC 5 cut(s) 12, 249, 278, 363, 689
PkrI GCNGC 1 cut(s) 331
PleI GAGTC 3 cut(s) 80, 94, 125
PluTI GGCGCC 1 cut(s) 756
PpsI GAGTC 3 cut(s) 80, 94, 125
Psp1406I AACGTT 1 cut(s) 854
PspFI CCCAGC 1 cut(s) 553
PspN4I GGNNCC 3 cut(s) 458, 654, 754
PspPI GGNCC 4 cut(s) 456, 582, 587, 878
PstI CTGCAG 1 cut(s) 58
PsuI RGATCY 1 cut(s) 652
RigI GGCCGGCC 1 cut(s) 588
RsaI GTAC 3 cut(s) 119, 839, 968
RsaNI GTAC 3 cut(s) 118, 838, 967
RseI CAYNNNNRTG 2 cut(s) 94, 183
SaqAI TTAA 3 cut(s) 192, 629, 1014
SatI GCNGC 1 cut(s) 330
Sau3AI GATC 5 cut(s) 162, 169, 548, 652, 1024
Sau96I GGNCC 4 cut(s) 456, 582, 587, 878
SchI GAGTC 3 cut(s) 80, 94, 125
ScrFI CCNGG 3 cut(s) 757, 782, 783
SfaNI GCATC 3 cut(s) 10, 598, 620
SfcI CTRYAG 1 cut(s) 54
SfoI GGCGCC 1 cut(s) 754
SmaI CCCGGG 1 cut(s) 783
SmiMI CAYNNNNRTG 2 cut(s) 94, 183
SpeI ACTAGT 1 cut(s) 916
Sse9I AATT 6 cut(s) 473, 576, 626, 631, 844, 1011
SsiI CCGC 3 cut(s) 330, 341, 773
SspDI GGCGCC 1 cut(s) 752
SspI AATATT 1 cut(s) 543
SspMI CTAG 3 cut(s) 518, 888, 917
StyD4I CCNGG 3 cut(s) 755, 780, 781
StyI CCWWGG 2 cut(s) 244, 666
TaaI ACNGT 1 cut(s) 769
TaiI ACGT 2 cut(s) 576, 857
TaqI TCGA 6 cut(s) 111, 168, 289, 334, 445, 911
TasI AATT 6 cut(s) 473, 576, 626, 631, 844, 1011
TauI GCSGC 1 cut(s) 332
TfiI GAWTC 5 cut(s) 12, 249, 278, 363, 689
Tru1I TTAA 3 cut(s) 192, 629, 1014
Tru9I TTAA 3 cut(s) 192, 629, 1014
TscAI CASTG 2 cut(s) 75, 772
TseFI GTSAC 4 cut(s) 235, 596, 919, 929
Tsp45I GTSAC 4 cut(s) 235, 596, 919, 929
TspDTI ATGAA 3 cut(s) 257, 524, 734
TspGWI ACGGA 2 cut(s) 375, 701
TspMI CCCGGG 1 cut(s) 781
TspRI CASTG 2 cut(s) 75, 772
XapI RAATTY 2 cut(s) 473, 631
XceI RCATGY 3 cut(s) 209, 213, 648
XcmI CCANNNNNNNNNTGG 1 cut(s) 664
XmaI CCCGGG 1 cut(s) 781
XmnI GAANNNNTTC 1 cut(s) 441
XspI CTAG 3 cut(s) 518, 888, 917
Zsp2I ATGCAT 3 cut(s) 97, 211, 613
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.