FvH4_6g30780

Belongs to the iron ascorbate-dependent oxidoreductase family

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
Physical Location & Seq
Reverse (-)
23899790 .. 23901536
1747 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g30780.t1

Sequence Viewer

Length: 1077 bp
ATGCCTGTAAGAATCTCCGAAGCCTTTCCATCCCACCCCCATAAACACTACCCTGCAGACTTCAACTCACTACACGAGTTACCAGACTCATATGCATGGACTAATCAACTCGACGAGTTCCCATCTCTGGACTCTCCATTCGGCTCTGATCTGTGTGTTCCGGTCATCGATCTAAATGACCAAAATGTCATTAAACTCATAGGACATGCATGTAAAACATGGGGTGTGTTCCAAGTCACAAACCATGGAGTCCCACAGAAGCTTGTTCATGATATTGAATCAACTTGTCGAAGCCTCTTCTCTCTGCCAGTTCAGCAGAAGCTCAAAGCCGCTCGACCGGCCGACGGAATTTCTGGTTATGGAATCCATCGGATATCTTCGTTTTTCCAAAAACTCATGTGGTCCGAGGGCTTCACCCTTGTTGGCTCACCACTTGAACATTTTCGACAACTCTGGCCCCAAGATTACAACAAATTCTGTTGTATGGTAGAAGAATACGAGACAGAGATGAAGAAGCTAGCAGGGAGGCTGATGTGGCTAATATTTGGATCATTGGGGATATCCAAGGAAGACGTCAGTTGGGCCGGCCCAAAAGGTGGCTTTGAAGACGCATCCAATGCTCTACAATTGAATTCCTACCCGGCTTGTCCGGATCCTAGTCGGGCCATGGGTCTGGCCGAGCATACGGACTCAACCCTCCTCACAATCATCCACCAATCCAACATAAGTGGCCTGCAAGTTCTTCGTGAAGGCGCCGGGTGGCTCACTGTTCCGCCCGTCGCCGGAGCTTTGGTGATCAACATTGGCGATCTCATTCATATCTTGTCCAACGGGGAGTACCAGAATGTGCTTCACCGGGCAATAGTCAACCGAAGTCAACAACGTCTATCGGTGGCTTACCTATATGGGCCACCGATTAACGTTCAAATCTCGCCTCATTCGAAATTGGTCACCCCAAGTCACCCTTCTCTTTACCGCCCGGTCACTTGGAAAGAGTACCTTGGTATCAAAGGAAAACTCTACAACAAGGCACTTTCATCCATTAAGTTTCATGATCATCAAAATGATCAAATGTAG

Protein Analysis

359

Amino Acids

40.06

Weight (kDa)

6.62

Isoelectric Point (pI)

48.41

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DIOX_N PF14226 53 - 154 1.3e-22 non-haem dioxygenase in morphine synthesis N-terminal
2OG-FeII_Oxy PF03171 207 - 304 6.4e-31 2OG-Fe(II) oxygenase superfamily
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 185
AatII GACGTC 1 cut(s) 576
AccB1I GGYRCC 1 cut(s) 752
AccB7I CCANNNNNTGG 1 cut(s) 596
AccBSI CCGCTC 1 cut(s) 332
AccIII TCCGGA 1 cut(s) 649
AciI CCGC 3 cut(s) 330, 773, 976
AclI AACGTT 1 cut(s) 921
AclWI GGATC 3 cut(s) 556, 647, 660
AcoI YGGCCR 2 cut(s) 339, 675
AcsI RAATTY 3 cut(s) 348, 473, 631
AcyI GRCGYC 2 cut(s) 573, 753
AfaI GTAC 2 cut(s) 839, 998
AfiI CCNNNNNNNGG 4 cut(s) 127, 344, 596, 782
AgsI TTSAA 6 cut(s) 64, 278, 437, 605, 631, 926
AjuI GAANNNNNNNTTGG 2 cut(s) 949, 981
AluBI AGCT 4 cut(s) 262, 322, 517, 788
AluI AGCT 4 cut(s) 262, 322, 517, 788
Alw26I GTCTC 1 cut(s) 494
AlwI GGATC 3 cut(s) 556, 647, 660
Aor13HI TCCGGA 1 cut(s) 649
AoxI GGCC 8 cut(s) 339, 455, 582, 586, 663, 675, 730, 908
ApoI RAATTY 3 cut(s) 348, 473, 631
ArsI GACNNNNNNTTYG 2 cut(s) 122, 154
Asp700I GAANNNNTTC 2 cut(s) 24, 441
AspLEI GCGC 1 cut(s) 755
AspS9I GGNCC 6 cut(s) 402, 456, 582, 587, 663, 908
AsuC2I CCSGG 4 cut(s) 641, 757, 857, 980
AsuHPI GGTGA 6 cut(s) 406, 420, 805, 845, 943, 953
AsuII TTCGAA 1 cut(s) 941
AsuNHI GCTAGC 1 cut(s) 517
AvaII GGWCC 1 cut(s) 402
BaeI ACNNNNGTAYC 2 cut(s) 988, 1021
BamHI GGATCC 1 cut(s) 652
BanI GGYRCC 1 cut(s) 752
BauI CACGAG 1 cut(s) 74
BbsI GAAGAC 2 cut(s) 576, 612
BccI CCATC 3 cut(s) 37, 130, 375
BcgI CGANNNNNNTGC 2 cut(s) 725, 759
BclI TGATCA 3 cut(s) 795, 1054, 1066
BcnI CCSGG 4 cut(s) 641, 757, 857, 980
BcoDI GTCTC 1 cut(s) 494
BfaI CTAG 2 cut(s) 518, 657
BfmI CTRYAG 1 cut(s) 54
BfoI RGCGCY 1 cut(s) 756
BisI GCNGC 1 cut(s) 330
BlsI GCNGC 1 cut(s) 331
Bme1390I CCNGG 4 cut(s) 641, 757, 857, 980
Bme18I GGWCC 1 cut(s) 402
BmgT120I GGNCC 6 cut(s) 402, 456, 582, 587, 663, 908
BmiI GGNNCC 3 cut(s) 458, 654, 754
BmrFI CCNGG 4 cut(s) 641, 757, 857, 980
BmsI GCATC 1 cut(s) 620
BmtI GCTAGC 1 cut(s) 521
BpiI GAAGAC 2 cut(s) 576, 612
Bpu14I TTCGAA 1 cut(s) 941
BpuMI CCSGG 4 cut(s) 641, 757, 857, 980
Bsa29I ATCGAT 1 cut(s) 168
BsaHI GRCGYC 2 cut(s) 573, 753
BsaJI CCNNGG 5 cut(s) 244, 405, 564, 666, 1000
BsaWI WCCGGW 2 cut(s) 160, 649
BsaXI ACNNNNNCTCC 2 cut(s) 777, 807
Bsc4I CCNNNNNNNGG 4 cut(s) 127, 344, 596, 782
Bse118I RCCGGY 2 cut(s) 337, 584
Bse1I ACTGG 1 cut(s) 308
BseAI TCCGGA 1 cut(s) 649
BseCI ATCGAT 1 cut(s) 168
BseDI CCNNGG 5 cut(s) 244, 405, 564, 666, 1000
BseGI GGATG 4 cut(s) 29, 611, 708, 1037
BseLI CCNNNNNNNGG 4 cut(s) 127, 344, 596, 782
BseNI ACTGG 1 cut(s) 308
BseRI GAGGAG 1 cut(s) 689
BseX3I CGGCCG 1 cut(s) 339
Bsh1285I CGRYCG 2 cut(s) 338, 342
BshFI GGCC 8 cut(s) 341, 457, 584, 588, 665, 677, 732, 910
BshNI GGYRCC 1 cut(s) 752
BshVI ATCGAT 1 cut(s) 168
BsiEI CGRYCG 2 cut(s) 338, 342
BsiSI CCGG 9 cut(s) 161, 338, 585, 641, 650, 756, 783, 856, 980
BslFI GGGAC 1 cut(s) 236
BslI CCNNNNNNNGG 4 cut(s) 127, 344, 596, 782
BsmAI GTCTC 1 cut(s) 494
BsmFI GGGAC 1 cut(s) 236
BsnI GGCC 8 cut(s) 341, 457, 584, 588, 665, 677, 732, 910
Bsp119I TTCGAA 1 cut(s) 941
Bsp13I TCCGGA 1 cut(s) 649
Bsp143I GATC 8 cut(s) 148, 169, 548, 652, 795, 808, 1054, 1066
Bsp19I CCATGG 2 cut(s) 244, 666
BspACI CCGC 3 cut(s) 330, 773, 976
BspANI GGCC 8 cut(s) 341, 457, 584, 588, 665, 677, 732, 910
BspDI ATCGAT 1 cut(s) 168
BspEI TCCGGA 1 cut(s) 649
BspHI TCATGA 2 cut(s) 268, 1051
BspLI GGNNCC 3 cut(s) 458, 654, 754
BspMAI CTGCAG 1 cut(s) 58
BspOI GCTAGC 1 cut(s) 521
BspPI GGATC 3 cut(s) 556, 647, 660
BspT104I TTCGAA 1 cut(s) 941
BspT107I GGYRCC 1 cut(s) 752
BsrBI CCGCTC 1 cut(s) 332
BsrFI RCCGGY 2 cut(s) 337, 584
BsrI ACTGG 1 cut(s) 308
BssAI RCCGGY 2 cut(s) 337, 584
BssECI CCNNGG 5 cut(s) 244, 405, 564, 666, 1000
BssMI GATC 8 cut(s) 148, 169, 548, 652, 795, 808, 1054, 1066
BssNI GRCGYC 2 cut(s) 573, 753
BssSI CACGAG 1 cut(s) 74
BssT1I CCWWGG 4 cut(s) 244, 564, 666, 1000
Bst2BI CACGAG 1 cut(s) 74
Bst4CI ACNGT 1 cut(s) 769
Bst6I CTCTTC 1 cut(s) 302
BstACI GRCGYC 2 cut(s) 573, 753
BstAPI GCANNNNNTGC 1 cut(s) 617
BstBI TTCGAA 1 cut(s) 941
BstC8I GCNNGC 3 cut(s) 519, 586, 734
BstDSI CCRYGG 2 cut(s) 244, 666
BstEII GGTNACC 1 cut(s) 949
BstF5I GGATG 4 cut(s) 29, 611, 708, 1037
BstH2I RGCGCY 1 cut(s) 756
BstHHI GCGC 1 cut(s) 755
BstKTI GATC 8 cut(s) 151, 172, 551, 655, 798, 811, 1057, 1069
BstMAI GTCTC 1 cut(s) 494
BstMBI GATC 8 cut(s) 148, 169, 548, 652, 795, 808, 1054, 1066
BstMCI CGRYCG 2 cut(s) 338, 342
BstMWI GCNNNNNNNGC 4 cut(s) 313, 338, 535, 617
BstNSI RCATGY 2 cut(s) 209, 213
BstPI GGTNACC 1 cut(s) 949
BstSCI CCNGG 4 cut(s) 639, 755, 855, 978
BstSFI CTRYAG 1 cut(s) 54
BstV2I GAAGAC 2 cut(s) 576, 612
BstX2I RGATCY 1 cut(s) 652
BstXI CCANNNNNNTGG 1 cut(s) 673
BstYI RGATCY 1 cut(s) 652
BstZI CGGCCG 1 cut(s) 339
Bsu15I ATCGAT 1 cut(s) 168
BsuRI GGCC 8 cut(s) 341, 457, 584, 588, 665, 677, 732, 910
BsuTUI ATCGAT 1 cut(s) 168
BtgI CCRYGG 2 cut(s) 244, 666
BtsCI GGATG 4 cut(s) 29, 611, 708, 1037
BtsIMutI CAGTG 1 cut(s) 765
Cac8I GCNNGC 3 cut(s) 519, 586, 734
CciI TCATGA 2 cut(s) 268, 1051
CfoI GCGC 1 cut(s) 755
Cfr10I RCCGGY 2 cut(s) 337, 584
Cfr13I GGNCC 6 cut(s) 402, 456, 582, 587, 663, 908
ClaI ATCGAT 1 cut(s) 168
CseI GACGC 1 cut(s) 617
Csp6I GTAC 2 cut(s) 838, 997
CspCI CAANNNNNGTGG 2 cut(s) 709, 744
CviAII CATG 9 cut(s) 96, 206, 210, 219, 245, 269, 397, 667, 1052
CviQI GTAC 2 cut(s) 838, 997
DinI GGCGCC 1 cut(s) 754
DpnI GATC 8 cut(s) 150, 171, 550, 654, 797, 810, 1056, 1068
DpnII GATC 8 cut(s) 148, 169, 548, 652, 795, 808, 1054, 1066
DrdI GACNNNNNNGTC 1 cut(s) 185
DseDI GACNNNNNNGTC 1 cut(s) 185
EaeI YGGCCR 2 cut(s) 339, 675
EagI CGGCCG 1 cut(s) 339
Eam1104I CTCTTC 1 cut(s) 302
EarI CTCTTC 1 cut(s) 302
EciI GGCGGA 1 cut(s) 762
EclXI CGGCCG 1 cut(s) 339
Eco130I CCWWGG 4 cut(s) 244, 564, 666, 1000
Eco32I GATATC 2 cut(s) 375, 561
Eco47I GGWCC 1 cut(s) 402
Eco52I CGGCCG 1 cut(s) 339
Eco91I GGTNACC 1 cut(s) 949
EcoO65I GGTNACC 1 cut(s) 949
EcoRI GAATTC 1 cut(s) 631
EcoRV GATATC 2 cut(s) 375, 561
EcoT14I CCWWGG 4 cut(s) 244, 564, 666, 1000
EcoT22I ATGCAT 2 cut(s) 97, 211
EgeI GGCGCC 1 cut(s) 754
EheI GGCGCC 1 cut(s) 754
ErhI CCWWGG 4 cut(s) 244, 564, 666, 1000
FaeI CATG 9 cut(s) 99, 209, 213, 222, 248, 272, 400, 670, 1055
FalI AAGNNNNNCTT 4 cut(s) 949, 981, 984, 1016
FaqI GGGAC 1 cut(s) 236
FatI CATG 9 cut(s) 95, 205, 209, 218, 244, 268, 396, 666, 1051
FauNDI CATATG 1 cut(s) 91
FbaI TGATCA 3 cut(s) 795, 1054, 1066
Fnu4HI GCNGC 1 cut(s) 330
FokI GGATG 4 cut(s) 16, 598, 695, 1024
FseI GGCCGGCC 1 cut(s) 588
Fsp4HI GCNGC 1 cut(s) 330
FspBI CTAG 2 cut(s) 518, 657
GlaI GCGC 1 cut(s) 754
GluI GCNGC 1 cut(s) 330
HaeII RGCGCY 1 cut(s) 756
HaeIII GGCC 8 cut(s) 341, 457, 584, 588, 665, 677, 732, 910
HapII CCGG 9 cut(s) 161, 338, 585, 641, 650, 756, 783, 856, 980
HgaI GACGC 1 cut(s) 617
HhaI GCGC 1 cut(s) 755
Hin1I GRCGYC 2 cut(s) 573, 753
Hin1II CATG 9 cut(s) 99, 209, 213, 222, 248, 272, 400, 670, 1055
Hin6I GCGC 1 cut(s) 753
HinP1I GCGC 1 cut(s) 753
HincII GTYRAC 2 cut(s) 868, 878
HindII GTYRAC 2 cut(s) 868, 878
HindIII AAGCTT 1 cut(s) 260
HinfI GANTC 7 cut(s) 12, 86, 131, 249, 278, 363, 689
HpaII CCGG 9 cut(s) 161, 338, 585, 641, 650, 756, 783, 856, 980
HphI GGTGA 6 cut(s) 406, 420, 805, 845, 943, 953
Hpy166II GTNNAC 2 cut(s) 868, 878
Hpy188I TCNGA 4 cut(s) 19, 148, 372, 406
Hpy188III TCNNGA 5 cut(s) 128, 269, 650, 746, 1052
Hpy8I GTNNAC 2 cut(s) 868, 878
Hpy99I CGWCG 3 cut(s) 116, 347, 782
HpyAV CCTTC 2 cut(s) 743, 975
HpyCH4III ACNGT 1 cut(s) 769
HpyCH4IV ACGT 3 cut(s) 573, 883, 921
HpyCH4V TGCA 4 cut(s) 56, 95, 209, 736
HpyF10VI GCNNNNNNNGC 4 cut(s) 313, 338, 535, 617
HpySE526I ACGT 3 cut(s) 573, 883, 921
Hsp92I GRCGYC 2 cut(s) 573, 753
Hsp92II CATG 9 cut(s) 99, 209, 213, 222, 248, 272, 400, 670, 1055
HspAI GCGC 1 cut(s) 753
KasI GGCGCC 1 cut(s) 752
Kpn2I TCCGGA 1 cut(s) 649
KroI GCCGGC 1 cut(s) 584
KroNI GCCGGC 1 cut(s) 586
Ksp22I TGATCA 3 cut(s) 795, 1054, 1066
Kzo9I GATC 8 cut(s) 148, 169, 548, 652, 795, 808, 1054, 1066
LmnI GCTCC 1 cut(s) 785
LweI GCATC 1 cut(s) 620
MaeI CTAG 2 cut(s) 518, 657
MaeII ACGT 3 cut(s) 573, 883, 921
MaeIII GTNAC 5 cut(s) 78, 235, 949, 959, 982
MalI GATC 8 cut(s) 150, 171, 550, 654, 797, 810, 1056, 1068
MbiI CCGCTC 1 cut(s) 332
MboI GATC 8 cut(s) 148, 169, 548, 652, 795, 808, 1054, 1066
MboII GAAGA 7 cut(s) 289, 369, 503, 523, 581, 617, 734
MfeI CAATTG 1 cut(s) 626
MflI RGATCY 1 cut(s) 652
MluCI AATT 5 cut(s) 348, 473, 626, 631, 944
Mly113I GGCGCC 1 cut(s) 753
MlyI GAGTC 4 cut(s) 80, 125, 258, 683
MmeI TCCRAC 2 cut(s) 744, 852
MnlI CCTC 6 cut(s) 305, 400, 519, 707, 710, 945
Mph1103I ATGCAT 2 cut(s) 97, 211
MroI TCCGGA 1 cut(s) 649
MroNI GCCGGC 1 cut(s) 584
MroXI GAANNNNTTC 2 cut(s) 24, 441
MseI TTAA 3 cut(s) 192, 918, 1044
MslI CAYNNNNRTG 2 cut(s) 94, 1062
MspI CCGG 9 cut(s) 161, 338, 585, 641, 650, 756, 783, 856, 980
MspR9I CCNGG 4 cut(s) 641, 757, 857, 980
MunI CAATTG 1 cut(s) 626
MwoI GCNNNNNNNGC 4 cut(s) 313, 338, 535, 617
NaeI GCCGGC 1 cut(s) 586
NarI GGCGCC 1 cut(s) 753
NciI CCSGG 4 cut(s) 641, 757, 857, 980
NcoI CCATGG 2 cut(s) 244, 666
NdeI CATATG 1 cut(s) 91
NdeII GATC 8 cut(s) 148, 169, 548, 652, 795, 808, 1054, 1066
NgoMIV GCCGGC 1 cut(s) 584
NheI GCTAGC 1 cut(s) 517
NlaIII CATG 9 cut(s) 99, 209, 213, 222, 248, 272, 400, 670, 1055
NlaIV GGNNCC 3 cut(s) 458, 654, 754
NmeAIII GCCGAG 1 cut(s) 703
NmuCI GTSAC 4 cut(s) 235, 949, 959, 982
NsiI ATGCAT 2 cut(s) 97, 211
NspI RCATGY 2 cut(s) 209, 213
NspV TTCGAA 1 cut(s) 941
PagI TCATGA 2 cut(s) 268, 1051
PcsI WCGNNNNNNNCGW 1 cut(s) 938
PdiI GCCGGC 1 cut(s) 586
PdmI GAANNNNTTC 2 cut(s) 24, 441
PfeI GAWTC 3 cut(s) 12, 278, 363
PflMI CCANNNNNTGG 1 cut(s) 596
PkrI GCNGC 1 cut(s) 331
PleI GAGTC 4 cut(s) 80, 125, 257, 683
PluTI GGCGCC 1 cut(s) 756
PpsI GAGTC 4 cut(s) 80, 125, 257, 683
Psp1406I AACGTT 1 cut(s) 921
PspEI GGTNACC 1 cut(s) 949
PspN4I GGNNCC 3 cut(s) 458, 654, 754
PspPI GGNCC 6 cut(s) 402, 456, 582, 587, 663, 908
PstI CTGCAG 1 cut(s) 58
PsuI RGATCY 1 cut(s) 652
RigI GGCCGGCC 1 cut(s) 588
RsaI GTAC 2 cut(s) 839, 998
RsaNI GTAC 2 cut(s) 838, 997
RseI CAYNNNNRTG 2 cut(s) 94, 1062
SaqAI TTAA 3 cut(s) 192, 918, 1044
SatI GCNGC 1 cut(s) 330
Sau3AI GATC 8 cut(s) 148, 169, 548, 652, 795, 808, 1054, 1066
Sau96I GGNCC 6 cut(s) 402, 456, 582, 587, 663, 908
SchI GAGTC 4 cut(s) 80, 125, 258, 683
ScrFI CCNGG 4 cut(s) 641, 757, 857, 980
SfaNI GCATC 1 cut(s) 620
SfcI CTRYAG 1 cut(s) 54
SfoI GGCGCC 1 cut(s) 754
SfuI TTCGAA 1 cut(s) 941
SinI GGWCC 1 cut(s) 402
SmiMI CAYNNNNRTG 2 cut(s) 94, 1062
Sse9I AATT 5 cut(s) 348, 473, 626, 631, 944
SsiI CCGC 3 cut(s) 330, 773, 976
SspDI GGCGCC 1 cut(s) 752
SspI AATATT 1 cut(s) 543
SspMI CTAG 2 cut(s) 518, 657
StyD4I CCNGG 4 cut(s) 639, 755, 855, 978
StyI CCWWGG 4 cut(s) 244, 564, 666, 1000
TaaI ACNGT 1 cut(s) 769
TaiI ACGT 3 cut(s) 576, 886, 924
TaqI TCGA 6 cut(s) 111, 168, 289, 334, 445, 941
TasI AATT 5 cut(s) 348, 473, 626, 631, 944
TauI GCSGC 1 cut(s) 332
TfiI GAWTC 3 cut(s) 12, 278, 363
Tru1I TTAA 3 cut(s) 192, 918, 1044
Tru9I TTAA 3 cut(s) 192, 918, 1044
TscAI CASTG 1 cut(s) 772
TseFI GTSAC 4 cut(s) 235, 949, 959, 982
Tsp45I GTSAC 4 cut(s) 235, 949, 959, 982
TspDTI ATGAA 5 cut(s) 257, 524, 806, 1026, 1040
TspGWI ACGGA 2 cut(s) 360, 701
TspRI CASTG 1 cut(s) 772
Van91I CCANNNNNTGG 1 cut(s) 596
VpaK11BI GGWCC 1 cut(s) 402
XapI RAATTY 3 cut(s) 348, 473, 631
XceI RCATGY 2 cut(s) 209, 213
XmnI GAANNNNTTC 2 cut(s) 24, 441
XspI CTAG 2 cut(s) 518, 657
ZraI GACGTC 1 cut(s) 574
Zsp2I ATGCAT 2 cut(s) 97, 211
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.