Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0029248.1

Orthogroup ID

OG0002967

Physical Location & Seq

Genomic Coordinates Reverse (-)

557 .. 958

Gene Structure 402 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0029248.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 402 bp

atgggtctggttgatcatactgattcaaatctcctctcaattgtccaccaaggcaacattagtggtttgcaagttctccgagacgggggttggatcatgattccaccaatcccgagtgctctggtgatcaacattggtgatttaattcatattttgtctaatgggttgtaccacaatgtcttccaccgtgctgtggtaaatcgtactcatcatcgtgtatcagttgcttacctatacggaccaccgataagtgcagaaatctcaccactttcaaaattggtaggaccaagccatcctcccctctatccctcagtaacttggaaagagtaccttggcatcaaggcaaaatttaacaacaaaacacttttatcactccgcctggatggcacatctcccaaataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006629 GO:0006720 GO:0006721 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0008299 GO:0008610 GO:0009058 GO:0009314 GO:0009416 GO:0009628 GO:0009639 GO:0009685 GO:0009686 GO:0009719 GO:0009725 GO:0009739 GO:0009740 GO:0009755 GO:0009987 GO:0010033 GO:0010114 GO:0010476 GO:0010817 GO:0016053 GO:0016101 GO:0016102 GO:0016114 GO:0016491 GO:0016705 GO:0016706 GO:0016707 GO:0019752 GO:0023052 GO:0032870 GO:0033993 GO:0042221 GO:0042445 GO:0042446 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044283 GO:0044424 GO:0044464 GO:0046394 GO:0050789 GO:0050794 GO:0050896 GO:0051213 GO:0051716 GO:0055114 GO:0065007 GO:0065008 GO:0070887 GO:0071229 GO:0071310 GO:0071370 GO:0071396 GO:0071495 GO:0071704 GO:1901576 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

ko00904 ko01110 map00904 map01110

Pfam Domains

Protein Families

2OG-FeII_Oxy DIOX_N

Protein Analysis

133

Amino Acids

14.59

Weight (kDa)

9.57

Isoelectric Point (pI)

42.11

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002967)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G15550 AT1G80340
fragaria_vesca	FvH4_6g30780
malus_domestica	MD02G1263100.v1.1 MD02G1263200.v1.1 MD07G1054800.v1.1 MD09G1217400.v1.1 MD17G1199100.v1.1
prunus_persica	Prupe.2G061700_v2.0.a1 Prupe.3G075600_v2.0.a1
pyrus_communis	pycom07g04260 pycom09g13440 pycom17g20380
rosa_chinensis	RchiOBHm_Chr2g0137231 RchiOBHm_Chr7g0236321
rosa_laevigata	RLG00000001086 RLG00000019636
rosa_multiflora	Rmu_co8273963.1_g000001 Rmu_sc0000894.1_g000034 Rmu_sc0001441.1_g000006 Rmu_sc0009898.1_g000005 Rmu_sc0029248.1_g000002
rosa_roxburghii	Rroxscaffold_2G00107310 Rroxscaffold_3G00225230
rosa_rugosa	Rorug02G0339700 Rorug07G0295900 Rorug07G0296000
rosa_samantha	Rh2AG388500 Rh2BG396100 Rh2CG375900 Rh2DG411200 Rh7AG450800 Rh7BG422300 Rh7CG470400 Rh7CG470500 Rh7DG439800
rosa_wichuraiana	Rw2G031830 Rw7G037480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	376
AclWI	GGATC	1 cut(s)	101
AcsI	RAATTY	1 cut(s)	347
AfaI	GTAC	3 cut(s)	170, 205, 329
AfiI	CCNNNNNNNGG	2 cut(s)	85, 193
AgsI	TTSAA	2 cut(s)	27, 273
AjnI	CCWGG	1 cut(s)	378
Alw21I	GWGCWC	1 cut(s)	121
Alw26I	GTCTC	1 cut(s)	75
AlwI	GGATC	1 cut(s)	101
Ama87I	CYCGRG	1 cut(s)	112
ApoI	RAATTY	1 cut(s)	347
AspS9I	GGNCC	2 cut(s)	239, 284
AsuHPI	GGTGA	3 cut(s)	136, 149, 255
AvaI	CYCGRG	1 cut(s)	112
AvaII	GGWCC	2 cut(s)	239, 284
BbsI	GAAGAC	1 cut(s)	172
Bbv12I	GWGCWC	1 cut(s)	121
BccI	CCATC	2 cut(s)	300, 377
BciT130I	CCWGG	1 cut(s)	380
BclI	TGATCA	2 cut(s)	13, 126
BcoDI	GTCTC	1 cut(s)	75
BglI	GCCNNNNNGGC	1 cut(s)	384
Bme1390I	CCNGG	1 cut(s)	380
Bme18I	GGWCC	2 cut(s)	239, 284
BmeT110I	CYCGRG	1 cut(s)	112
BmgT120I	GGNCC	2 cut(s)	239, 284
BmrFI	CCNGG	1 cut(s)	380
BmsI	GCATC	1 cut(s)	345
BpiI	GAAGAC	1 cut(s)	172
BsaBI	GATNNNNATC	1 cut(s)	27
BsaJI	CCNNGG	2 cut(s)	49, 331
Bsc4I	CCNNNNNNNGG	2 cut(s)	85, 193
Bse8I	GATNNNNATC	1 cut(s)	27
BseBI	CCWGG	1 cut(s)	380
BseDI	CCNNGG	2 cut(s)	49, 331
BseGI	GGATG	2 cut(s)	292, 388
BseJI	GATNNNNATC	1 cut(s)	27
BseLI	CCNNNNNNNGG	2 cut(s)	85, 193
BseMII	CTCAG	1 cut(s)	324
BseRI	GAGGAG	1 cut(s)	23
BsgI	GTGCAG	1 cut(s)	273
BsiHKAI	GWGCWC	1 cut(s)	121
BsiHKCI	CYCGRG	1 cut(s)	112
BslI	CCNNNNNNNGG	2 cut(s)	85, 193
BsmAI	GTCTC	1 cut(s)	75
BsmBI	CGTCTC	1 cut(s)	75
BsoBI	CYCGRG	1 cut(s)	112
Bsp1286I	GDGCHC	1 cut(s)	121
Bsp143I	GATC	3 cut(s)	13, 93, 126
BspACI	CCGC	1 cut(s)	376
BspCNI	CTCAG	1 cut(s)	323
BspHI	TCATGA	1 cut(s)	96
BspPI	GGATC	1 cut(s)	101
BssECI	CCNNGG	2 cut(s)	49, 331
BssMI	GATC	3 cut(s)	13, 93, 126
BssT1I	CCWWGG	2 cut(s)	49, 331
Bst2UI	CCWGG	1 cut(s)	380
Bst4CI	ACNGT	1 cut(s)	188
BstDEI	CTNAG	1 cut(s)	310
BstF5I	GGATG	2 cut(s)	292, 388
BstKTI	GATC	3 cut(s)	16, 96, 129
BstMAI	GTCTC	1 cut(s)	75
BstMBI	GATC	3 cut(s)	13, 93, 126
BstMWI	GCNNNNNNNGC	1 cut(s)	384
BstNI	CCWGG	1 cut(s)	380
BstSCI	CCNGG	1 cut(s)	378
BstV2I	GAAGAC	1 cut(s)	172
BtsCI	GGATG	2 cut(s)	292, 388
CciI	TCATGA	1 cut(s)	96
Cfr13I	GGNCC	2 cut(s)	239, 284
Csp6I	GTAC	3 cut(s)	169, 204, 328
CspCI	CAANNNNNGTGG	2 cut(s)	43, 78
CviAII	CATG	1 cut(s)	97
CviJI	RGCY	1 cut(s)	291
CviKI_1	RGCY	1 cut(s)	291
CviQI	GTAC	3 cut(s)	169, 204, 328
DdeI	CTNAG	1 cut(s)	310
DpnI	GATC	3 cut(s)	15, 95, 128
DpnII	GATC	3 cut(s)	13, 93, 126
EciI	GGCGGA	1 cut(s)	365
Eco130I	CCWWGG	2 cut(s)	49, 331
Eco47I	GGWCC	2 cut(s)	239, 284
Eco88I	CYCGRG	1 cut(s)	112
EcoRII	CCWGG	1 cut(s)	378
EcoT14I	CCWWGG	2 cut(s)	49, 331
ErhI	CCWWGG	2 cut(s)	49, 331
Esp3I	CGTCTC	1 cut(s)	75
FaeI	CATG	1 cut(s)	100
FaiI	YATR	4 cut(s)	18, 98, 150, 235
FalI	AAGNNNNNCTT	2 cut(s)	315, 347
FatI	CATG	1 cut(s)	96
FbaI	TGATCA	2 cut(s)	13, 126
FokI	GGATG	2 cut(s)	279, 395
Hin1II	CATG	1 cut(s)	100
HinfI	GANTC	2 cut(s)	23, 100
HphI	GGTGA	3 cut(s)	136, 149, 255
Hpy166II	GTNNAC	1 cut(s)	46
Hpy188I	TCNGA	1 cut(s)	80
Hpy188III	TCNNGA	2 cut(s)	97, 112
Hpy8I	GTNNAC	1 cut(s)	46
HpyCH4III	ACNGT	1 cut(s)	188
HpyCH4V	TGCA	2 cut(s)	70, 254
HpyF10VI	GCNNNNNNNGC	1 cut(s)	384
HpyF3I	CTNAG	1 cut(s)	310
Hsp92II	CATG	1 cut(s)	100
Ksp22I	TGATCA	2 cut(s)	13, 126
Kzo9I	GATC	3 cut(s)	13, 93, 126
LpnPI	CCDG	3 cut(s)	107, 365, 392
LweI	GCATC	1 cut(s)	345
MaeIII	GTNAC	1 cut(s)	313
MalI	GATC	3 cut(s)	15, 95, 128
MboI	GATC	3 cut(s)	13, 93, 126
MboII	GAAGA	1 cut(s)	172
MfeI	CAATTG	1 cut(s)	39
MhlI	GDGCHC	1 cut(s)	121
MluCI	AATT	4 cut(s)	39, 144, 275, 347
MmeI	TCCRAC	1 cut(s)	71
MnlI	CCTC	4 cut(s)	44, 306, 311, 319
MseI	TTAA	2 cut(s)	143, 351
MslI	CAYNNNNRTG	1 cut(s)	213
MspR9I	CCNGG	1 cut(s)	380
MunI	CAATTG	1 cut(s)	39
MvaI	CCWGG	1 cut(s)	380
MwoI	GCNNNNNNNGC	1 cut(s)	384
NdeII	GATC	3 cut(s)	13, 93, 126
NlaIII	CATG	1 cut(s)	100
PagI	TCATGA	1 cut(s)	96
PfeI	GAWTC	2 cut(s)	23, 100
Psp6I	CCWGG	1 cut(s)	378
PspGI	CCWGG	1 cut(s)	378
PspPI	GGNCC	2 cut(s)	239, 284
RsaI	GTAC	3 cut(s)	170, 205, 329
RsaNI	GTAC	3 cut(s)	169, 204, 328
RseI	CAYNNNNRTG	1 cut(s)	213
SaqAI	TTAA	2 cut(s)	143, 351
Sau3AI	GATC	3 cut(s)	13, 93, 126
Sau96I	GGNCC	2 cut(s)	239, 284
ScrFI	CCNGG	1 cut(s)	380
SduI	GDGCHC	1 cut(s)	121
SetI	ASST	2 cut(s)	234, 333
SfaNI	GCATC	1 cut(s)	345
SinI	GGWCC	2 cut(s)	239, 284
SmiMI	CAYNNNNRTG	1 cut(s)	213
Sse9I	AATT	4 cut(s)	39, 144, 275, 347
SsiI	CCGC	1 cut(s)	376
StyD4I	CCNGG	1 cut(s)	378
StyI	CCWWGG	2 cut(s)	49, 331
TaaI	ACNGT	1 cut(s)	188
TasI	AATT	4 cut(s)	39, 144, 275, 347
TfiI	GAWTC	2 cut(s)	23, 100
Tru1I	TTAA	2 cut(s)	143, 351
Tru9I	TTAA	2 cut(s)	143, 351
TspDTI	ATGAA	1 cut(s)	137
TspGWI	ACGGA	1 cut(s)	252
VpaK11BI	GGWCC	2 cut(s)	239, 284
XapI	RAATTY	1 cut(s)	347

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.