RLG00000019636

Belongs to the iron ascorbate-dependent oxidoreductase family

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
Physical Location & Seq
Reverse (-)
54677403 .. 54678798
1396 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000019636

Sequence Viewer

Length: 1080 bp
ATGCCTGTAAGAATCTCCGATGCCTTTCAATCCCACCCCCATAAACACTACCCTGCAGACTTCAACTCACTGCACGAGTTACCGGACTCATATGCATGGACTCATCAACTCGACGAGTACCCATCTCTGGACTCGTCATTCGGCTCAGAGCTGTGTGTTCCGATCATCGATCTAACTCACCAAAATGCCCTTAAACTCATAGGACATGCATGTAAAACATGGGGGGTGTTCCAAGTCACAAACCATGGAATCCCAGAGAAGCTTCTTCATGACATTGAATCAACTTGTCGAAGCCTGTTCTCTCTGCCAGTCCAGCAGAAGCTCAAAGCCGCTCGACCGGCGGATGGCATTTCTGGTTATGGAATCCATCGTATATCTTCGTTTTTCCAAAAACTCATGTGGTCGGAGGGCTTTACTATTGCTGGCTCACCACTCGAACATTTTCGACAACTCTGGCCCCAAGATTACAACAAATTCTGTTGTTTGGTAGAAGAATATGAGAAAGAGATGAAAGGGCTAGCGGGGAAGCTGATGTGGTTAATATTTGGATCGCTGGGCATTCCGAAGGAAGACGTAATTTGGGCCGGCCCAAAAGGTGACTTTGAAGATGCATCCAATGCCATACAATTTAATTCTTACCCTGCATGTCCGGATCCCAATCGTGCCATGGGTTTGGCCGAACATACGGATTCAACCCTCCTGTCAATCATCCACCAAACCAACATAAGTGGCTTGCAAGTTCTTCATGAGGGCGCCGGGTGGCTCACGGTTCCGCCAGTCGCGGGAGCTTTGGTGGTCAACATTGGGGACCTTACTCATATCTTGTCCAACGGGGTGTACCACAATGTCCTTCACCGGGCAATTGTGAACCGGAGTCAACAACGTCTATCCATTGCTTACCTATATGGGCCACCAGCTAGTGTCCAAATCTCGCCTCAGTCGAAAGTAGTCACCCCAAGTCACCCTCCCCTTTATCGGCCAATCACTTGGAAGGAGTACCTTGCAATCAAAGGAAGACTTTACAACCAGACCCTTTCATCAATTAAGCTTTATGATCCTCTAAATGACCAAATGAATTAG

Protein Analysis

360

Amino Acids

40.19

Weight (kDa)

6.4

Isoelectric Point (pI)

42.99

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DIOX_N PF14226 53 - 154 5.5e-22 non-haem dioxygenase in morphine synthesis N-terminal
2OG-FeII_Oxy PF03171 208 - 304 1.3e-29 2OG-Fe(II) oxygenase superfamily
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 752
AccBSI CCGCTC 1 cut(s) 332
AccII CGCG 1 cut(s) 782
AccIII TCCGGA 1 cut(s) 649
AciI CCGC 5 cut(s) 330, 341, 521, 773, 782
AclWI GGATC 4 cut(s) 556, 647, 660, 1049
AcoI YGGCCR 2 cut(s) 675, 977
AcsI RAATTY 1 cut(s) 473
AcyI GRCGYC 1 cut(s) 753
AfaI GTAC 3 cut(s) 119, 839, 998
AfiI CCNNNNNNNGG 5 cut(s) 127, 344, 782, 856, 975
AgsI TTSAA 5 cut(s) 29, 64, 278, 605, 693
AluBI AGCT 7 cut(s) 151, 262, 322, 529, 788, 917, 1048
AluI AGCT 7 cut(s) 151, 262, 322, 529, 788, 917, 1048
AlwI GGATC 4 cut(s) 556, 647, 660, 1049
Aor13HI TCCGGA 1 cut(s) 649
AoxI GGCC 6 cut(s) 455, 582, 586, 675, 908, 977
ApoI RAATTY 1 cut(s) 473
ArsI GACNNNNNNTTYG 2 cut(s) 122, 154
Asp700I GAANNNNTTC 1 cut(s) 441
AspLEI GCGC 1 cut(s) 755
AspS9I GGNCC 5 cut(s) 456, 582, 587, 808, 908
AsuC2I CCSGG 2 cut(s) 757, 857
AsuHPI GGTGA 6 cut(s) 170, 420, 608, 845, 943, 953
AsuNHI GCTAGC 1 cut(s) 517
AvaII GGWCC 1 cut(s) 808
BamHI GGATCC 1 cut(s) 652
BanI GGYRCC 1 cut(s) 752
BauI CACGAG 1 cut(s) 74
BbsI GAAGAC 2 cut(s) 576, 1021
BccI CCATC 3 cut(s) 130, 338, 375
BcnI CCSGG 2 cut(s) 757, 857
BfaI CTAG 2 cut(s) 518, 918
BfmI CTRYAG 1 cut(s) 54
BfoI RGCGCY 1 cut(s) 756
BisI GCNGC 1 cut(s) 330
BlsI GCNGC 1 cut(s) 331
Bme1390I CCNGG 2 cut(s) 757, 857
Bme18I GGWCC 1 cut(s) 808
BmgT120I GGNCC 5 cut(s) 456, 582, 587, 808, 908
BmiI GGNNCC 5 cut(s) 458, 654, 754, 771, 809
BmrFI CCNGG 2 cut(s) 757, 857
BmsI GCATC 3 cut(s) 10, 598, 620
BmtI GCTAGC 1 cut(s) 521
BpiI GAAGAC 2 cut(s) 576, 1021
BpuMI CCSGG 2 cut(s) 757, 857
Bsa29I ATCGAT 1 cut(s) 168
BsaBI GATNNNNATC 1 cut(s) 657
BsaHI GRCGYC 1 cut(s) 753
BsaJI CCNNGG 2 cut(s) 244, 666
BsaWI WCCGGW 3 cut(s) 82, 649, 870
BsaXI ACNNNNNCTCC 2 cut(s) 777, 807
Bsc4I CCNNNNNNNGG 5 cut(s) 127, 344, 782, 856, 975
Bse118I RCCGGY 2 cut(s) 337, 584
Bse1I ACTGG 2 cut(s) 308, 776
Bse3DI GCAATG 1 cut(s) 891
Bse8I GATNNNNATC 1 cut(s) 657
BseAI TCCGGA 1 cut(s) 649
BseCI ATCGAT 1 cut(s) 168
BseDI CCNNGG 2 cut(s) 244, 666
BseGI GGATG 3 cut(s) 349, 611, 708
BseJI GATNNNNATC 1 cut(s) 657
BseLI CCNNNNNNNGG 5 cut(s) 127, 344, 782, 856, 975
BseMI GCAATG 1 cut(s) 891
BseMII CTCAG 2 cut(s) 159, 950
BseNI ACTGG 2 cut(s) 308, 776
BseYI CCCAGC 1 cut(s) 553
BsgI GTGCAG 1 cut(s) 56
Bsh1236I CGCG 1 cut(s) 782
Bsh1285I CGRYCG 1 cut(s) 338
BshFI GGCC 6 cut(s) 457, 584, 588, 677, 910, 979
BshNI GGYRCC 1 cut(s) 752
BshVI ATCGAT 1 cut(s) 168
BsiEI CGRYCG 1 cut(s) 338
BsiSI CCGG 7 cut(s) 83, 338, 585, 650, 756, 856, 871
BslFI GGGAC 1 cut(s) 821
BslI CCNNNNNNNGG 5 cut(s) 127, 344, 782, 856, 975
BsmFI GGGAC 1 cut(s) 821
BsmI GAATGC 1 cut(s) 558
BsnI GGCC 6 cut(s) 457, 584, 588, 677, 910, 979
Bsp13I TCCGGA 1 cut(s) 649
Bsp143I GATC 5 cut(s) 162, 169, 548, 652, 1054
Bsp19I CCATGG 2 cut(s) 244, 666
BspACI CCGC 5 cut(s) 330, 341, 521, 773, 782
BspANI GGCC 6 cut(s) 457, 584, 588, 677, 910, 979
BspCNI CTCAG 2 cut(s) 158, 949
BspDI ATCGAT 1 cut(s) 168
BspEI TCCGGA 1 cut(s) 649
BspFNI CGCG 1 cut(s) 782
BspHI TCATGA 2 cut(s) 268, 745
BspLI GGNNCC 5 cut(s) 458, 654, 754, 771, 809
BspMAI CTGCAG 1 cut(s) 58
BspOI GCTAGC 1 cut(s) 521
BspPI GGATC 4 cut(s) 556, 647, 660, 1049
BspT107I GGYRCC 1 cut(s) 752
BsrBI CCGCTC 1 cut(s) 332
BsrDI GCAATG 1 cut(s) 891
BsrFI RCCGGY 2 cut(s) 337, 584
BsrI ACTGG 2 cut(s) 308, 776
BssAI RCCGGY 2 cut(s) 337, 584
BssECI CCNNGG 2 cut(s) 244, 666
BssMI GATC 5 cut(s) 162, 169, 548, 652, 1054
BssNI GRCGYC 1 cut(s) 753
BssSI CACGAG 1 cut(s) 74
BssT1I CCWWGG 2 cut(s) 244, 666
Bst2BI CACGAG 1 cut(s) 74
Bst4CI ACNGT 1 cut(s) 769
BstACI GRCGYC 1 cut(s) 753
BstAPI GCANNNNNTGC 1 cut(s) 617
BstC8I GCNNGC 4 cut(s) 424, 519, 586, 734
BstDEI CTNAG 2 cut(s) 145, 936
BstDSI CCRYGG 2 cut(s) 244, 666
BstF5I GGATG 3 cut(s) 349, 611, 708
BstFNI CGCG 1 cut(s) 782
BstH2I RGCGCY 1 cut(s) 756
BstHHI GCGC 1 cut(s) 755
BstKTI GATC 5 cut(s) 165, 172, 551, 655, 1057
BstMBI GATC 5 cut(s) 162, 169, 548, 652, 1054
BstMCI CGRYCG 1 cut(s) 338
BstMWI GCNNNNNNNGC 3 cut(s) 313, 338, 617
BstNSI RCATGY 3 cut(s) 209, 213, 648
BstSCI CCNGG 2 cut(s) 755, 855
BstSFI CTRYAG 1 cut(s) 54
BstUI CGCG 1 cut(s) 782
BstV2I GAAGAC 2 cut(s) 576, 1021
BstX2I RGATCY 1 cut(s) 652
BstXI CCANNNNNNTGG 2 cut(s) 673, 987
BstYI RGATCY 1 cut(s) 652
Bsu15I ATCGAT 1 cut(s) 168
BsuRI GGCC 6 cut(s) 457, 584, 588, 677, 910, 979
BsuTUI ATCGAT 1 cut(s) 168
BtgI CCRYGG 2 cut(s) 244, 666
BtsCI GGATG 3 cut(s) 349, 611, 708
BtsI GCAGTG 1 cut(s) 68
BtsIMutI CAGTG 1 cut(s) 68
Cac8I GCNNGC 4 cut(s) 424, 519, 586, 734
CciI TCATGA 2 cut(s) 268, 745
CfoI GCGC 1 cut(s) 755
Cfr10I RCCGGY 2 cut(s) 337, 584
Cfr13I GGNCC 5 cut(s) 456, 582, 587, 808, 908
ClaI ATCGAT 1 cut(s) 168
Csp6I GTAC 3 cut(s) 118, 838, 997
CspCI CAANNNNNGTGG 2 cut(s) 709, 744
CviQI GTAC 3 cut(s) 118, 838, 997
DdeI CTNAG 2 cut(s) 145, 936
DinI GGCGCC 1 cut(s) 754
DpnI GATC 5 cut(s) 164, 171, 550, 654, 1056
DpnII GATC 5 cut(s) 162, 169, 548, 652, 1054
EaeI YGGCCR 2 cut(s) 675, 977
EciI GGCGGA 2 cut(s) 356, 762
Eco130I CCWWGG 2 cut(s) 244, 666
Eco47I GGWCC 1 cut(s) 808
EcoO109I RGGNCCY 1 cut(s) 808
EcoT14I CCWWGG 2 cut(s) 244, 666
EcoT22I ATGCAT 3 cut(s) 97, 211, 613
EgeI GGCGCC 1 cut(s) 754
EheI GGCGCC 1 cut(s) 754
ErhI CCWWGG 2 cut(s) 244, 666
FalI AAGNNNNNCTT 2 cut(s) 1002, 1034
FaqI GGGAC 1 cut(s) 821
FauI CCCGC 2 cut(s) 514, 775
FauNDI CATATG 1 cut(s) 91
Fnu4HI GCNGC 1 cut(s) 330
FokI GGATG 3 cut(s) 356, 598, 695
FseI GGCCGGCC 1 cut(s) 588
Fsp4HI GCNGC 1 cut(s) 330
FspBI CTAG 2 cut(s) 518, 918
GlaI GCGC 1 cut(s) 754
GluI GCNGC 1 cut(s) 330
GsaI CCCAGC 1 cut(s) 557
HaeII RGCGCY 1 cut(s) 756
HaeIII GGCC 6 cut(s) 457, 584, 588, 677, 910, 979
HapII CCGG 7 cut(s) 83, 338, 585, 650, 756, 856, 871
HhaI GCGC 1 cut(s) 755
Hin1I GRCGYC 1 cut(s) 753
Hin6I GCGC 1 cut(s) 753
HinP1I GCGC 1 cut(s) 753
HincII GTYRAC 2 cut(s) 799, 878
HindII GTYRAC 2 cut(s) 799, 878
HindIII AAGCTT 2 cut(s) 260, 1046
HinfI GANTC 9 cut(s) 12, 86, 100, 131, 249, 278, 363, 689, 874
HpaII CCGG 7 cut(s) 83, 338, 585, 650, 756, 856, 871
HphI GGTGA 6 cut(s) 170, 420, 608, 845, 943, 953
Hpy166II GTNNAC 4 cut(s) 799, 838, 868, 878
Hpy188I TCNGA 5 cut(s) 19, 148, 162, 406, 564
Hpy188III TCNNGA 4 cut(s) 128, 269, 650, 746
Hpy8I GTNNAC 4 cut(s) 799, 838, 868, 878
Hpy99I CGWCG 1 cut(s) 116
HpyAV CCTTC 3 cut(s) 559, 860, 985
HpyCH4III ACNGT 1 cut(s) 769
HpyCH4IV ACGT 2 cut(s) 573, 883
HpyCH4V TGCA 8 cut(s) 56, 73, 95, 209, 611, 644, 736, 1004
HpyF10VI GCNNNNNNNGC 3 cut(s) 313, 338, 617
HpyF3I CTNAG 2 cut(s) 145, 936
HpySE526I ACGT 2 cut(s) 573, 883
Hsp92I GRCGYC 1 cut(s) 753
HspAI GCGC 1 cut(s) 753
KasI GGCGCC 1 cut(s) 752
Kpn2I TCCGGA 1 cut(s) 649
KroI GCCGGC 1 cut(s) 584
KroNI GCCGGC 1 cut(s) 586
Kzo9I GATC 5 cut(s) 162, 169, 548, 652, 1054
LmnI GCTCC 1 cut(s) 785
LweI GCATC 3 cut(s) 10, 598, 620
MaeI CTAG 2 cut(s) 518, 918
MaeII ACGT 2 cut(s) 573, 883
MaeIII GTNAC 5 cut(s) 78, 235, 596, 949, 959
MalI GATC 5 cut(s) 164, 171, 550, 654, 1056
MbiI CCGCTC 1 cut(s) 332
MboI GATC 5 cut(s) 162, 169, 548, 652, 1054
MboII GAAGA 7 cut(s) 257, 369, 503, 581, 617, 734, 1026
MfeI CAATTG 1 cut(s) 861
MflI RGATCY 1 cut(s) 652
MluCI AATT 7 cut(s) 473, 576, 626, 631, 861, 1041, 1075
Mly113I GGCGCC 1 cut(s) 753
MlyI GAGTC 4 cut(s) 80, 94, 125, 883
MmeI TCCRAC 2 cut(s) 384, 852
MnlI CCTC 6 cut(s) 400, 707, 742, 945, 975, 1068
Mph1103I ATGCAT 3 cut(s) 97, 211, 613
MroI TCCGGA 1 cut(s) 649
MroNI GCCGGC 1 cut(s) 584
MroXI GAANNNNTTC 1 cut(s) 441
MseI TTAA 4 cut(s) 192, 539, 630, 1044
MslI CAYNNNNRTG 2 cut(s) 94, 183
MspI CCGG 7 cut(s) 83, 338, 585, 650, 756, 856, 871
MspR9I CCNGG 2 cut(s) 757, 857
MunI CAATTG 1 cut(s) 861
Mva1269I GAATGC 1 cut(s) 558
MvnI CGCG 1 cut(s) 782
MwoI GCNNNNNNNGC 3 cut(s) 313, 338, 617
NaeI GCCGGC 1 cut(s) 586
NarI GGCGCC 1 cut(s) 753
NciI CCSGG 2 cut(s) 757, 857
NcoI CCATGG 2 cut(s) 244, 666
NdeI CATATG 1 cut(s) 91
NdeII GATC 5 cut(s) 162, 169, 548, 652, 1054
NgoMIV GCCGGC 1 cut(s) 584
NheI GCTAGC 1 cut(s) 517
NlaIV GGNNCC 5 cut(s) 458, 654, 754, 771, 809
NmuCI GTSAC 4 cut(s) 235, 596, 949, 959
NsiI ATGCAT 3 cut(s) 97, 211, 613
NspI RCATGY 3 cut(s) 209, 213, 648
PagI TCATGA 2 cut(s) 268, 745
PcsI WCGNNNNNNNCGW 1 cut(s) 938
PctI GAATGC 1 cut(s) 558
PdiI GCCGGC 1 cut(s) 586
PdmI GAANNNNTTC 1 cut(s) 441
PfeI GAWTC 5 cut(s) 12, 249, 278, 363, 689
PkrI GCNGC 1 cut(s) 331
PleI GAGTC 4 cut(s) 80, 94, 125, 882
PluTI GGCGCC 1 cut(s) 756
PpsI GAGTC 4 cut(s) 80, 94, 125, 882
PpuMI RGGWCCY 1 cut(s) 808
Psp5II RGGWCCY 1 cut(s) 808
PspFI CCCAGC 1 cut(s) 553
PspN4I GGNNCC 5 cut(s) 458, 654, 754, 771, 809
PspPI GGNCC 5 cut(s) 456, 582, 587, 808, 908
PspPPI RGGWCCY 1 cut(s) 808
PstI CTGCAG 1 cut(s) 58
PsuI RGATCY 1 cut(s) 652
RigI GGCCGGCC 1 cut(s) 588
RsaI GTAC 3 cut(s) 119, 839, 998
RsaNI GTAC 3 cut(s) 118, 838, 997
RseI CAYNNNNRTG 2 cut(s) 94, 183
SaqAI TTAA 4 cut(s) 192, 539, 630, 1044
SatI GCNGC 1 cut(s) 330
Sau3AI GATC 5 cut(s) 162, 169, 548, 652, 1054
Sau96I GGNCC 5 cut(s) 456, 582, 587, 808, 908
SchI GAGTC 4 cut(s) 80, 94, 125, 883
ScrFI CCNGG 2 cut(s) 757, 857
SfaNI GCATC 3 cut(s) 10, 598, 620
SfcI CTRYAG 1 cut(s) 54
SfoI GGCGCC 1 cut(s) 754
SinI GGWCC 1 cut(s) 808
SmiMI CAYNNNNRTG 2 cut(s) 94, 183
Sse9I AATT 7 cut(s) 473, 576, 626, 631, 861, 1041, 1075
SsiI CCGC 5 cut(s) 330, 341, 521, 773, 782
SspDI GGCGCC 1 cut(s) 752
SspI AATATT 1 cut(s) 543
SspMI CTAG 2 cut(s) 518, 918
StyD4I CCNGG 2 cut(s) 755, 855
StyI CCWWGG 2 cut(s) 244, 666
TaaI ACNGT 1 cut(s) 769
TaiI ACGT 2 cut(s) 576, 886
TaqI TCGA 7 cut(s) 111, 168, 289, 334, 435, 445, 941
TasI AATT 7 cut(s) 473, 576, 626, 631, 861, 1041, 1075
TauI GCSGC 1 cut(s) 332
TfiI GAWTC 5 cut(s) 12, 249, 278, 363, 689
Tru1I TTAA 4 cut(s) 192, 539, 630, 1044
Tru9I TTAA 4 cut(s) 192, 539, 630, 1044
TscAI CASTG 1 cut(s) 75
TseFI GTSAC 4 cut(s) 235, 596, 949, 959
Tsp45I GTSAC 4 cut(s) 235, 596, 949, 959
TspDTI ATGAA 4 cut(s) 257, 524, 734, 1026
TspGWI ACGGA 1 cut(s) 701
TspRI CASTG 1 cut(s) 75
VpaK11BI GGWCC 1 cut(s) 808
XapI RAATTY 1 cut(s) 473
XceI RCATGY 3 cut(s) 209, 213, 648
XcmI CCANNNNNNNNNTGG 1 cut(s) 664
XmnI GAANNNNTTC 1 cut(s) 441
XspI CTAG 2 cut(s) 518, 918
Zsp2I ATGCAT 3 cut(s) 97, 211, 613
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.