Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7C

Orthogroup ID

OG0002967

Physical Location & Seq

Genomic Coordinates Forward (+)

63077333 .. 63077893

Gene Structure 561 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7CG470500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 561 bp

ATGAAAAAGCTTGCGGAGAGGCTGATGTGGCTAATGCTTGGGTCATTAGGCGTATTCAAGGAAGATGTCAAATGGGCTAACCCAAATAGTGAACTTGAAGCTGCATCTGCTGCCTTACAATTGAATTCTTACCCAGCTTGTCCAGATCCAAATCGAGCCATGGGTCTGGTTGATCATACTGATTCAAATCTCCTCTCAATTGTCCACCAAGGCAACATTAGTGGTTTGCAAGTTCTCCGAGACGGGGGTTGGATCATGATTCCACCAATCCCGGGTGCTCTGGTGATCAACATTGGTGATTTAATTCATATTTTGTCTAATGGGTTGTACCACAATGTCTTCCACCGTGCTGTGGTAAATCGTACTCATCATCGTGTATCAGTTGCTTACCTATACGGACCCCCGATGAGTGCAGAAATCTCACCACTTTCAAAATTGGTAGGACCAAGTCATCCTCCCCTCTATCCCTCAGTAACTTGGAAAGAGTACCTTGGCATCAAGGCAAAATTTAACAACAAAACACTTTTATCACTCCGCCTGGATGGCACATCTCCCAAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006629 GO:0006720 GO:0006721 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0008299 GO:0008610 GO:0009058 GO:0009314 GO:0009416 GO:0009628 GO:0009639 GO:0009685 GO:0009686 GO:0009719 GO:0009725 GO:0009739 GO:0009740 GO:0009755 GO:0009987 GO:0010033 GO:0010114 GO:0010476 GO:0010817 GO:0016053 GO:0016101 GO:0016102 GO:0016114 GO:0016491 GO:0016705 GO:0016706 GO:0016707 GO:0019752 GO:0023052 GO:0032870 GO:0033993 GO:0042221 GO:0042445 GO:0042446 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044283 GO:0044424 GO:0044464 GO:0046394 GO:0050789 GO:0050794 GO:0050896 GO:0051213 GO:0051716 GO:0055114 GO:0065007 GO:0065008 GO:0070887 GO:0071229 GO:0071310 GO:0071370 GO:0071396 GO:0071495 GO:0071704 GO:1901576 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

ko00904 ko01110 map00904 map01110

Pfam Domains

Protein Families

2OG-FeII_Oxy DIOX_N

Protein Analysis

186

Amino Acids

20.43

Weight (kDa)

9.24

Isoelectric Point (pI)

40.22

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
2OG-FeII_Oxy	PF03171	37 - 134	1.2e-30	2OG-Fe(II) oxygenase superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0002967)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G15550 AT1G80340
fragaria_vesca	FvH4_6g30780
malus_domestica	MD02G1263100.v1.1 MD02G1263200.v1.1 MD07G1054800.v1.1 MD09G1217400.v1.1 MD17G1199100.v1.1
prunus_persica	Prupe.2G061700_v2.0.a1 Prupe.3G075600_v2.0.a1
pyrus_communis	pycom07g04260 pycom09g13440 pycom17g20380
rosa_chinensis	RchiOBHm_Chr2g0137231 RchiOBHm_Chr7g0236321
rosa_laevigata	RLG00000001086 RLG00000019636
rosa_multiflora	Rmu_co8273963.1_g000001 Rmu_sc0000894.1_g000034 Rmu_sc0001441.1_g000006 Rmu_sc0009898.1_g000005 Rmu_sc0029248.1_g000002
rosa_roxburghii	Rroxscaffold_2G00107310 Rroxscaffold_3G00225230
rosa_rugosa	Rorug02G0339700 Rorug07G0295900 Rorug07G0296000
rosa_samantha	Rh2AG388500 Rh2BG396100 Rh2CG375900 Rh2DG411200 Rh7AG450800 Rh7BG422300 Rh7CG470400 Rh7CG470500 Rh7DG439800
rosa_wichuraiana	Rw2G031830 Rw7G037480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	14, 535
AclWI	GGATC	2 cut(s)	140, 260
AcsI	RAATTY	2 cut(s)	124, 506
AfaI	GTAC	3 cut(s)	329, 364, 488
AfiI	CCNNNNNNNGG	3 cut(s)	244, 272, 352
AgsI	TTSAA	5 cut(s)	58, 98, 124, 186, 432
AjnI	CCWGG	1 cut(s)	537
AluBI	AGCT	3 cut(s)	10, 101, 137
AluI	AGCT	3 cut(s)	10, 101, 137
Alw21I	GWGCWC	1 cut(s)	280
Alw26I	GTCTC	1 cut(s)	234
AlwI	GGATC	2 cut(s)	140, 260
Ama87I	CYCGRG	1 cut(s)	271
ApeKI	GCWGC	2 cut(s)	101, 110
ApoI	RAATTY	2 cut(s)	124, 506
AspS9I	GGNCC	2 cut(s)	398, 443
AsuC2I	CCSGG	2 cut(s)	272, 273
AsuHPI	GGTGA	3 cut(s)	295, 308, 414
AvaI	CYCGRG	1 cut(s)	271
AvaII	GGWCC	2 cut(s)	398, 443
BbsI	GAAGAC	1 cut(s)	331
Bbv12I	GWGCWC	1 cut(s)	280
BbvI	GCAGC	2 cut(s)	88, 97
BccI	CCATC	1 cut(s)	536
BciT130I	CCWGG	1 cut(s)	539
BclI	TGATCA	2 cut(s)	172, 285
BcnI	CCSGG	2 cut(s)	272, 273
BcoDI	GTCTC	1 cut(s)	234
BglI	GCCNNNNNGGC	1 cut(s)	543
BisI	GCNGC	2 cut(s)	102, 111
BlsI	GCNGC	2 cut(s)	103, 112
Bme1390I	CCNGG	3 cut(s)	272, 273, 539
Bme18I	GGWCC	2 cut(s)	398, 443
BmeT110I	CYCGRG	1 cut(s)	271
BmgT120I	GGNCC	2 cut(s)	398, 443
BmiI	GGNNCC	1 cut(s)	400
BmrFI	CCNGG	3 cut(s)	272, 273, 539
BmsI	GCATC	2 cut(s)	113, 504
BpiI	GAAGAC	1 cut(s)	331
BpuMI	CCSGG	2 cut(s)	272, 273
BsaBI	GATNNNNATC	2 cut(s)	150, 186
BsaJI	CCNNGG	4 cut(s)	159, 208, 271, 490
Bsc4I	CCNNNNNNNGG	3 cut(s)	244, 272, 352
Bse8I	GATNNNNATC	2 cut(s)	150, 186
BseBI	CCWGG	1 cut(s)	539
BseDI	CCNNGG	4 cut(s)	159, 208, 271, 490
BseGI	GGATG	2 cut(s)	451, 547
BseJI	GATNNNNATC	2 cut(s)	150, 186
BseLI	CCNNNNNNNGG	3 cut(s)	244, 272, 352
BseMII	CTCAG	1 cut(s)	483
BseRI	GAGGAG	1 cut(s)	182
BseXI	GCAGC	2 cut(s)	88, 97
BseYI	CCCAGC	1 cut(s)	133
BsgI	GTGCAG	1 cut(s)	432
BsiHKAI	GWGCWC	1 cut(s)	280
BsiHKCI	CYCGRG	1 cut(s)	271
BsiSI	CCGG	1 cut(s)	272
BslI	CCNNNNNNNGG	3 cut(s)	244, 272, 352
BsmAI	GTCTC	1 cut(s)	234
BsmBI	CGTCTC	1 cut(s)	234
BsoBI	CYCGRG	1 cut(s)	271
Bsp1286I	GDGCHC	1 cut(s)	280
Bsp143I	GATC	4 cut(s)	145, 172, 252, 285
Bsp19I	CCATGG	1 cut(s)	159
BspACI	CCGC	2 cut(s)	14, 535
BspCNI	CTCAG	1 cut(s)	482
BspHI	TCATGA	1 cut(s)	255
BspLI	GGNNCC	1 cut(s)	400
BspPI	GGATC	2 cut(s)	140, 260
BssECI	CCNNGG	4 cut(s)	159, 208, 271, 490
BssMI	GATC	4 cut(s)	145, 172, 252, 285
BssT1I	CCWWGG	3 cut(s)	159, 208, 490
Bst2UI	CCWGG	1 cut(s)	539
Bst4CI	ACNGT	1 cut(s)	347
BstAPI	GCANNNNNTGC	1 cut(s)	110
BstC8I	GCNNGC	1 cut(s)	12
BstDEI	CTNAG	1 cut(s)	469
BstDSI	CCRYGG	1 cut(s)	159
BstF5I	GGATG	2 cut(s)	451, 547
BstKTI	GATC	4 cut(s)	148, 175, 255, 288
BstMAI	GTCTC	1 cut(s)	234
BstMBI	GATC	4 cut(s)	145, 172, 252, 285
BstMWI	GCNNNNNNNGC	4 cut(s)	28, 107, 110, 543
BstNI	CCWGG	1 cut(s)	539
BstSCI	CCNGG	3 cut(s)	270, 271, 537
BstV1I	GCAGC	2 cut(s)	88, 97
BstV2I	GAAGAC	1 cut(s)	331
BstX2I	RGATCY	1 cut(s)	145
BstXI	CCANNNNNNTGG	1 cut(s)	166
BstYI	RGATCY	1 cut(s)	145
BtgI	CCRYGG	1 cut(s)	159
BtsCI	GGATG	2 cut(s)	451, 547
Cac8I	GCNNGC	1 cut(s)	12
CciI	TCATGA	1 cut(s)	255
Cfr13I	GGNCC	2 cut(s)	398, 443
Cfr9I	CCCGGG	1 cut(s)	271
Csp6I	GTAC	3 cut(s)	328, 363, 487
CspCI	CAANNNNNGTGG	2 cut(s)	202, 237
CviAII	CATG	2 cut(s)	160, 256
CviJI	RGCY	7 cut(s)	10, 22, 31, 77, 101, 137, 158
CviKI_1	RGCY	7 cut(s)	10, 22, 31, 77, 101, 137, 158
CviQI	GTAC	3 cut(s)	328, 363, 487
DdeI	CTNAG	1 cut(s)	469
DpnI	GATC	4 cut(s)	147, 174, 254, 287
DpnII	GATC	4 cut(s)	145, 172, 252, 285
EciI	GGCGGA	1 cut(s)	524
Eco130I	CCWWGG	3 cut(s)	159, 208, 490
Eco47I	GGWCC	2 cut(s)	398, 443
Eco88I	CYCGRG	1 cut(s)	271
EcoRI	GAATTC	1 cut(s)	124
EcoRII	CCWGG	1 cut(s)	537
EcoT14I	CCWWGG	3 cut(s)	159, 208, 490
ErhI	CCWWGG	3 cut(s)	159, 208, 490
Esp3I	CGTCTC	1 cut(s)	234
FaeI	CATG	2 cut(s)	163, 259
FaiI	YATR	5 cut(s)	161, 177, 257, 309, 394
FalI	AAGNNNNNCTT	2 cut(s)	474, 506
FatI	CATG	2 cut(s)	159, 255
FbaI	TGATCA	2 cut(s)	172, 285
Fnu4HI	GCNGC	2 cut(s)	102, 111
FokI	GGATG	2 cut(s)	438, 554
Fsp4HI	GCNGC	2 cut(s)	102, 111
GluI	GCNGC	2 cut(s)	102, 111
GsaI	CCCAGC	1 cut(s)	137
HapII	CCGG	1 cut(s)	272
Hin1II	CATG	2 cut(s)	163, 259
HindIII	AAGCTT	1 cut(s)	8
HinfI	GANTC	2 cut(s)	182, 259
HpaII	CCGG	1 cut(s)	272
HphI	GGTGA	3 cut(s)	295, 308, 414
Hpy166II	GTNNAC	2 cut(s)	92, 205
Hpy188I	TCNGA	1 cut(s)	239
Hpy188III	TCNNGA	2 cut(s)	143, 256
Hpy8I	GTNNAC	2 cut(s)	92, 205
HpyCH4III	ACNGT	1 cut(s)	347
HpyCH4V	TGCA	3 cut(s)	104, 229, 413
HpyF10VI	GCNNNNNNNGC	4 cut(s)	28, 107, 110, 543
HpyF3I	CTNAG	1 cut(s)	469
Hsp92II	CATG	2 cut(s)	163, 259
Ksp22I	TGATCA	2 cut(s)	172, 285
Kzo9I	GATC	4 cut(s)	145, 172, 252, 285
LpnPI	CCDG	7 cut(s)	147, 152, 156, 266, 285, 524, 551
Lsp1109I	GCAGC	2 cut(s)	88, 97
LweI	GCATC	2 cut(s)	113, 504
MaeIII	GTNAC	1 cut(s)	472
MalI	GATC	4 cut(s)	147, 174, 254, 287
MboI	GATC	4 cut(s)	145, 172, 252, 285
MboII	GAAGA	2 cut(s)	74, 331
MfeI	CAATTG	2 cut(s)	119, 198
MflI	RGATCY	1 cut(s)	145
MhlI	GDGCHC	1 cut(s)	280
MluCI	AATT	6 cut(s)	119, 124, 198, 303, 434, 506
MmeI	TCCRAC	1 cut(s)	230
MnlI	CCTC	5 cut(s)	12, 203, 465, 470, 478
MseI	TTAA	2 cut(s)	302, 510
MslI	CAYNNNNRTG	1 cut(s)	372
MspI	CCGG	1 cut(s)	272
MspR9I	CCNGG	3 cut(s)	272, 273, 539
MunI	CAATTG	2 cut(s)	119, 198
MvaI	CCWGG	1 cut(s)	539
MwoI	GCNNNNNNNGC	4 cut(s)	28, 107, 110, 543
NciI	CCSGG	2 cut(s)	272, 273
NcoI	CCATGG	1 cut(s)	159
NdeII	GATC	4 cut(s)	145, 172, 252, 285
NlaIII	CATG	2 cut(s)	163, 259
NlaIV	GGNNCC	1 cut(s)	400
PagI	TCATGA	1 cut(s)	255
PfeI	GAWTC	2 cut(s)	182, 259
PflFI	GACNNNGTC	1 cut(s)	447
PkrI	GCNGC	2 cut(s)	103, 112
Psp6I	CCWGG	1 cut(s)	537
PspFI	CCCAGC	1 cut(s)	133
PspGI	CCWGG	1 cut(s)	537
PspN4I	GGNNCC	1 cut(s)	400
PspPI	GGNCC	2 cut(s)	398, 443
PsuI	RGATCY	1 cut(s)	145
PsyI	GACNNNGTC	1 cut(s)	447
RsaI	GTAC	3 cut(s)	329, 364, 488
RsaNI	GTAC	3 cut(s)	328, 363, 487
RseI	CAYNNNNRTG	1 cut(s)	372
SaqAI	TTAA	2 cut(s)	302, 510
SatI	GCNGC	2 cut(s)	102, 111
Sau3AI	GATC	4 cut(s)	145, 172, 252, 285
Sau96I	GGNCC	2 cut(s)	398, 443
ScrFI	CCNGG	3 cut(s)	272, 273, 539
SduI	GDGCHC	1 cut(s)	280
SetI	ASST	5 cut(s)	12, 103, 139, 393, 492
SfaNI	GCATC	2 cut(s)	113, 504
SinI	GGWCC	2 cut(s)	398, 443
SmaI	CCCGGG	1 cut(s)	273
SmiMI	CAYNNNNRTG	1 cut(s)	372
Sse9I	AATT	6 cut(s)	119, 124, 198, 303, 434, 506
SsiI	CCGC	2 cut(s)	14, 535
StyD4I	CCNGG	3 cut(s)	270, 271, 537
StyI	CCWWGG	3 cut(s)	159, 208, 490
TaaI	ACNGT	1 cut(s)	347
TaqI	TCGA	1 cut(s)	154
TasI	AATT	6 cut(s)	119, 124, 198, 303, 434, 506
TfiI	GAWTC	2 cut(s)	182, 259
Tru1I	TTAA	2 cut(s)	302, 510
Tru9I	TTAA	2 cut(s)	302, 510
TseI	GCWGC	2 cut(s)	101, 110
TspDTI	ATGAA	2 cut(s)	17, 296
TspGWI	ACGGA	1 cut(s)	411
TspMI	CCCGGG	1 cut(s)	271
Tth111I	GACNNNGTC	1 cut(s)	447
VpaK11BI	GGWCC	2 cut(s)	398, 443
XapI	RAATTY	2 cut(s)	124, 506
XmaI	CCCGGG	1 cut(s)	271

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.