Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001441.1

Orthogroup ID

OG0002967

Physical Location & Seq

Genomic Coordinates Forward (+)

15655 .. 16056

Gene Structure 402 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001441.1_g000006.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 402 bp

atgggtctggttgatcatactgattcaaatctcctctcaattgtccaccaaggcaacattagtggtttgcaagttctccgagacgggggttggatcatgattccaccaatcccgagtgctctggtgatcaacattggtgatttaattcatattttgtctaatgggttgtaccacaatgtcttccaccgtgctgtggtaaatcgtactcatcatcgtgtatcagttgcttacctatacggaccaccgataagtgcagaaatctcaccactttcaaaattggtaggaccaagccatcctcccctctatccctcagtaacttggaaagagtaccttggcatcaaggcaaaatttaacaacaaaacacttttatcactccgcctggatggcacatctcccaaataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006629 GO:0006720 GO:0006721 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0008299 GO:0008610 GO:0009058 GO:0009314 GO:0009416 GO:0009628 GO:0009639 GO:0009685 GO:0009686 GO:0009719 GO:0009725 GO:0009739 GO:0009740 GO:0009755 GO:0009987 GO:0010033 GO:0010114 GO:0010476 GO:0010817 GO:0016053 GO:0016101 GO:0016102 GO:0016114 GO:0016491 GO:0016705 GO:0016706 GO:0016707 GO:0019752 GO:0023052 GO:0032870 GO:0033993 GO:0042221 GO:0042445 GO:0042446 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044283 GO:0044424 GO:0044464 GO:0046394 GO:0050789 GO:0050794 GO:0050896 GO:0051213 GO:0051716 GO:0055114 GO:0065007 GO:0065008 GO:0070887 GO:0071229 GO:0071310 GO:0071370 GO:0071396 GO:0071495 GO:0071704 GO:1901576 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

ko00904 ko01110 map00904 map01110

Pfam Domains

Protein Families

2OG-FeII_Oxy DIOX_N

Protein Analysis

133

Amino Acids

14.59

Weight (kDa)

9.57

Isoelectric Point (pI)

42.11

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002967)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G15550 AT1G80340
fragaria_vesca	FvH4_6g30780
malus_domestica	MD02G1263100.v1.1 MD02G1263200.v1.1 MD07G1054800.v1.1 MD09G1217400.v1.1 MD17G1199100.v1.1
prunus_persica	Prupe.2G061700_v2.0.a1 Prupe.3G075600_v2.0.a1
pyrus_communis	pycom07g04260 pycom09g13440 pycom17g20380
rosa_chinensis	RchiOBHm_Chr2g0137231 RchiOBHm_Chr7g0236321
rosa_laevigata	RLG00000001086 RLG00000019636
rosa_multiflora	Rmu_co8273963.1_g000001 Rmu_sc0000894.1_g000034 Rmu_sc0001441.1_g000006 Rmu_sc0009898.1_g000005 Rmu_sc0029248.1_g000002
rosa_roxburghii	Rroxscaffold_2G00107310 Rroxscaffold_3G00225230
rosa_rugosa	Rorug02G0339700 Rorug07G0295900 Rorug07G0296000
rosa_samantha	Rh2AG388500 Rh2BG396100 Rh2CG375900 Rh2DG411200 Rh7AG450800 Rh7BG422300 Rh7CG470400 Rh7CG470500 Rh7DG439800
rosa_wichuraiana	Rw2G031830 Rw7G037480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	376
AclWI	GGATC	1 cut(s)	101
AcsI	RAATTY	1 cut(s)	347
AfaI	GTAC	3 cut(s)	170, 205, 329
AfiI	CCNNNNNNNGG	2 cut(s)	85, 193
AgsI	TTSAA	2 cut(s)	27, 273
AjnI	CCWGG	1 cut(s)	378
Alw21I	GWGCWC	1 cut(s)	121
Alw26I	GTCTC	1 cut(s)	75
AlwI	GGATC	1 cut(s)	101
Ama87I	CYCGRG	1 cut(s)	112
ApoI	RAATTY	1 cut(s)	347
AspS9I	GGNCC	2 cut(s)	239, 284
AsuHPI	GGTGA	3 cut(s)	136, 149, 255
AvaI	CYCGRG	1 cut(s)	112
AvaII	GGWCC	2 cut(s)	239, 284
BbsI	GAAGAC	1 cut(s)	172
Bbv12I	GWGCWC	1 cut(s)	121
BccI	CCATC	2 cut(s)	300, 377
BciT130I	CCWGG	1 cut(s)	380
BclI	TGATCA	2 cut(s)	13, 126
BcoDI	GTCTC	1 cut(s)	75
BglI	GCCNNNNNGGC	1 cut(s)	384
Bme1390I	CCNGG	1 cut(s)	380
Bme18I	GGWCC	2 cut(s)	239, 284
BmeT110I	CYCGRG	1 cut(s)	112
BmgT120I	GGNCC	2 cut(s)	239, 284
BmrFI	CCNGG	1 cut(s)	380
BmsI	GCATC	1 cut(s)	345
BpiI	GAAGAC	1 cut(s)	172
BsaBI	GATNNNNATC	1 cut(s)	27
BsaJI	CCNNGG	2 cut(s)	49, 331
Bsc4I	CCNNNNNNNGG	2 cut(s)	85, 193
Bse8I	GATNNNNATC	1 cut(s)	27
BseBI	CCWGG	1 cut(s)	380
BseDI	CCNNGG	2 cut(s)	49, 331
BseGI	GGATG	2 cut(s)	292, 388
BseJI	GATNNNNATC	1 cut(s)	27
BseLI	CCNNNNNNNGG	2 cut(s)	85, 193
BseMII	CTCAG	1 cut(s)	324
BseRI	GAGGAG	1 cut(s)	23
BsgI	GTGCAG	1 cut(s)	273
BsiHKAI	GWGCWC	1 cut(s)	121
BsiHKCI	CYCGRG	1 cut(s)	112
BslI	CCNNNNNNNGG	2 cut(s)	85, 193
BsmAI	GTCTC	1 cut(s)	75
BsmBI	CGTCTC	1 cut(s)	75
BsoBI	CYCGRG	1 cut(s)	112
Bsp1286I	GDGCHC	1 cut(s)	121
Bsp143I	GATC	3 cut(s)	13, 93, 126
BspACI	CCGC	1 cut(s)	376
BspCNI	CTCAG	1 cut(s)	323
BspHI	TCATGA	1 cut(s)	96
BspPI	GGATC	1 cut(s)	101
BssECI	CCNNGG	2 cut(s)	49, 331
BssMI	GATC	3 cut(s)	13, 93, 126
BssT1I	CCWWGG	2 cut(s)	49, 331
Bst2UI	CCWGG	1 cut(s)	380
Bst4CI	ACNGT	1 cut(s)	188
BstDEI	CTNAG	1 cut(s)	310
BstF5I	GGATG	2 cut(s)	292, 388
BstKTI	GATC	3 cut(s)	16, 96, 129
BstMAI	GTCTC	1 cut(s)	75
BstMBI	GATC	3 cut(s)	13, 93, 126
BstMWI	GCNNNNNNNGC	1 cut(s)	384
BstNI	CCWGG	1 cut(s)	380
BstSCI	CCNGG	1 cut(s)	378
BstV2I	GAAGAC	1 cut(s)	172
BtsCI	GGATG	2 cut(s)	292, 388
CciI	TCATGA	1 cut(s)	96
Cfr13I	GGNCC	2 cut(s)	239, 284
Csp6I	GTAC	3 cut(s)	169, 204, 328
CspCI	CAANNNNNGTGG	2 cut(s)	43, 78
CviAII	CATG	1 cut(s)	97
CviJI	RGCY	1 cut(s)	291
CviKI_1	RGCY	1 cut(s)	291
CviQI	GTAC	3 cut(s)	169, 204, 328
DdeI	CTNAG	1 cut(s)	310
DpnI	GATC	3 cut(s)	15, 95, 128
DpnII	GATC	3 cut(s)	13, 93, 126
EciI	GGCGGA	1 cut(s)	365
Eco130I	CCWWGG	2 cut(s)	49, 331
Eco47I	GGWCC	2 cut(s)	239, 284
Eco88I	CYCGRG	1 cut(s)	112
EcoRII	CCWGG	1 cut(s)	378
EcoT14I	CCWWGG	2 cut(s)	49, 331
ErhI	CCWWGG	2 cut(s)	49, 331
Esp3I	CGTCTC	1 cut(s)	75
FaeI	CATG	1 cut(s)	100
FaiI	YATR	4 cut(s)	18, 98, 150, 235
FalI	AAGNNNNNCTT	2 cut(s)	315, 347
FatI	CATG	1 cut(s)	96
FbaI	TGATCA	2 cut(s)	13, 126
FokI	GGATG	2 cut(s)	279, 395
Hin1II	CATG	1 cut(s)	100
HinfI	GANTC	2 cut(s)	23, 100
HphI	GGTGA	3 cut(s)	136, 149, 255
Hpy166II	GTNNAC	1 cut(s)	46
Hpy188I	TCNGA	1 cut(s)	80
Hpy188III	TCNNGA	2 cut(s)	97, 112
Hpy8I	GTNNAC	1 cut(s)	46
HpyCH4III	ACNGT	1 cut(s)	188
HpyCH4V	TGCA	2 cut(s)	70, 254
HpyF10VI	GCNNNNNNNGC	1 cut(s)	384
HpyF3I	CTNAG	1 cut(s)	310
Hsp92II	CATG	1 cut(s)	100
Ksp22I	TGATCA	2 cut(s)	13, 126
Kzo9I	GATC	3 cut(s)	13, 93, 126
LpnPI	CCDG	3 cut(s)	107, 365, 392
LweI	GCATC	1 cut(s)	345
MaeIII	GTNAC	1 cut(s)	313
MalI	GATC	3 cut(s)	15, 95, 128
MboI	GATC	3 cut(s)	13, 93, 126
MboII	GAAGA	1 cut(s)	172
MfeI	CAATTG	1 cut(s)	39
MhlI	GDGCHC	1 cut(s)	121
MluCI	AATT	4 cut(s)	39, 144, 275, 347
MmeI	TCCRAC	1 cut(s)	71
MnlI	CCTC	4 cut(s)	44, 306, 311, 319
MseI	TTAA	2 cut(s)	143, 351
MslI	CAYNNNNRTG	1 cut(s)	213
MspR9I	CCNGG	1 cut(s)	380
MunI	CAATTG	1 cut(s)	39
MvaI	CCWGG	1 cut(s)	380
MwoI	GCNNNNNNNGC	1 cut(s)	384
NdeII	GATC	3 cut(s)	13, 93, 126
NlaIII	CATG	1 cut(s)	100
PagI	TCATGA	1 cut(s)	96
PfeI	GAWTC	2 cut(s)	23, 100
Psp6I	CCWGG	1 cut(s)	378
PspGI	CCWGG	1 cut(s)	378
PspPI	GGNCC	2 cut(s)	239, 284
RsaI	GTAC	3 cut(s)	170, 205, 329
RsaNI	GTAC	3 cut(s)	169, 204, 328
RseI	CAYNNNNRTG	1 cut(s)	213
SaqAI	TTAA	2 cut(s)	143, 351
Sau3AI	GATC	3 cut(s)	13, 93, 126
Sau96I	GGNCC	2 cut(s)	239, 284
ScrFI	CCNGG	1 cut(s)	380
SduI	GDGCHC	1 cut(s)	121
SetI	ASST	2 cut(s)	234, 333
SfaNI	GCATC	1 cut(s)	345
SinI	GGWCC	2 cut(s)	239, 284
SmiMI	CAYNNNNRTG	1 cut(s)	213
Sse9I	AATT	4 cut(s)	39, 144, 275, 347
SsiI	CCGC	1 cut(s)	376
StyD4I	CCNGG	1 cut(s)	378
StyI	CCWWGG	2 cut(s)	49, 331
TaaI	ACNGT	1 cut(s)	188
TasI	AATT	4 cut(s)	39, 144, 275, 347
TfiI	GAWTC	2 cut(s)	23, 100
Tru1I	TTAA	2 cut(s)	143, 351
Tru9I	TTAA	2 cut(s)	143, 351
TspDTI	ATGAA	1 cut(s)	137
TspGWI	ACGGA	1 cut(s)	252
VpaK11BI	GGWCC	2 cut(s)	239, 284
XapI	RAATTY	1 cut(s)	347

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.