AT1G21400

2-oxoisovalerate dehydrogenase subunit alpha 1

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
Physical Location & Seq
Forward (+)
7493213 .. 7496741
3529 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G21400.6

Sequence Viewer

Length: 1419 bp
ATGGCGATCTGGTTTGCTAGATCCAAAACCCTTGTTTCTAGCTTGAGACATAATCTAAATTTGTCGACAATTCTCATAAAACGTGATTACTCTCATCGTCCCATCTTCTATACAACTTCTCAGTTATCTTCAACGGCGTATTTGAGTCCCTTCGGTAGCCTCCGTCATGAGTCTACGGCCGTGGAGACACAGGCTGATCATTTGGTTCAGCAGATTGATGAAGTCGATGCCCAGGAACTGGATTTCCCAGGAGGCAAAGTCGGTTACACATCGGAGATGAAATTCATACCGGAATCATCTTCAAGGAGGATTCCATGTTACCGGGTTCTTGACGAAGACGGACGAATCATCCCCGATAGCGATTTTATTCCGGTGAGTGAGAAACTCGCTGTTAGAATGTACGAACAAATGGCGACGCTACAAGTAATGGATCACATCTTCTACGAAGCTCAACGTCAAGGAAGAATATCTTTTTATCTTACTTCCGTCGGAGAAGAAGCCATTAACATCGCTTCAGCAGCTGCTCTCAGTCCTGACGACGTCGTTTTACCTCAGTACCGAGAACCTGGAGTTCTTTTGTGGCGTGGCTTCACGTTGGAGGAGTTTGCTAATCAGTGTTTTGGGAACAAAGCTGATTATGGCAAAGGCAGACAAATGCCAATTCATTACGGTTCCAATCGTCTTAATTACTTCACTATCTCCTCTCCAATTGCCACGCAACTTCCTCAAGCTGCTGGAGTTGGTTATTCTTTGAAAATGGACAAGAAGAATGCTTGTACTGTTACATTCATCGGAGATGGTGGCACAAGCGAGGGAGATTTTCACGCCGGATTGAATTTTGCGGCCGTAATGGAAGCTCCGGTTGTGTTTATATGTCGGAACAACGGTTGGGCGATTAGTACTCATATCTCAGAACAGTTTAGAAGTGATGGAATAGTTGTGAAAGGTCAAGCTTACGGTATCCGAAGCATCCGTGTGGACGGTAACGATGCACTTGCGGTTTATAGTGCTGTACGCTCAGCTCGAGAAATGGCTGTAACAGAACAAAGACCTGTTCTCATTGAGATGATGACATATAGAGTAGGACATCATTCTACATCAGATGATTCAACTAAGTACAGGGCGGCGGATGAAATCCAGTACTGGAAAATGTCGAGAAACCCTGTGAATAGATTTCGGAAATGGGTCGAAGATAACGGATGGTGGAGTGAGGAAGATGAATCCAAGCTAAGATCTAACGCAAGAAAACAGCTTCTGCAAGCGATTCAGGCTGCGGAGAAGTGGGAGAAACAACCATTGACAGAGTTGTTTAACGATGTATATGATGTTAAACCGAAGAACCTAGAAGAGCAAGAACTTGGTTTGAAGGAATTAGTAAAGAAACAACCTCAAGATTATCCTCCTGGCTTTCATGTTTGA

Protein Analysis

472

Amino Acids

53.49

Weight (kDa)

5.94

Isoelectric Point (pI)

52.59

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
E1_dh PF00676 187 - 362 1.8e-52 Dehydrogenase E1 component
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 543
AccB7I CCANNNNNTGG 1 cut(s) 238
AccI GTMKAC 2 cut(s) 65, 173
AciI CCGC 5 cut(s) 842, 998, 1124, 1127, 1274
AclWI GGATC 2 cut(s) 15, 438
AcoI YGGCCR 2 cut(s) 177, 843
AcsI RAATTY 3 cut(s) 58, 281, 835
AcuI CTGAAG 1 cut(s) 498
AcyI GRCGYC 1 cut(s) 540
AfaI GTAC 7 cut(s) 401, 557, 778, 901, 1014, 1118, 1142
AfiI CCNNNNNNNGG 1 cut(s) 238
AgsI TTSAA 6 cut(s) 132, 303, 754, 835, 1110, 1366
AjnI CCWGG 4 cut(s) 231, 247, 565, 1402
AloI GAACNNNNNNTCC 2 cut(s) 228, 260
Alw26I GTCTC 2 cut(s) 40, 179
AlwI GGATC 2 cut(s) 15, 438
AlwNI CAGNNNCTG 3 cut(s) 238, 521, 1255
Ama87I CYCGRG 1 cut(s) 1023
AoxI GGCC 2 cut(s) 177, 843
ApeKI GCWGC 4 cut(s) 518, 521, 731, 1271
ApoI RAATTY 3 cut(s) 58, 281, 835
AsuC2I CCSGG 1 cut(s) 323
AsuHPI GGTGA 1 cut(s) 385
AvaI CYCGRG 1 cut(s) 1023
BaeI ACNNNNGTAYC 2 cut(s) 539, 572
BbsI GAAGAC 1 cut(s) 342
BbvI GCAGC 4 cut(s) 508, 530, 718, 1258
BccI CCATC 4 cut(s) 110, 791, 923, 1194
BceAI ACGGC 4 cut(s) 150, 164, 192, 830
BcgI CGANNNNNNTGC 2 cut(s) 977, 1011
BciT130I CCWGG 4 cut(s) 233, 249, 567, 1404
BciVI GTATCC 1 cut(s) 971
BclI TGATCA 1 cut(s) 196
BcnI CCSGG 1 cut(s) 323
BcoDI GTCTC 2 cut(s) 40, 179
BfaI CTAG 3 cut(s) 18, 39, 1343
BfuI GTATCC 1 cut(s) 971
BglII AGATCT 1 cut(s) 1232
BisI GCNGC 6 cut(s) 519, 522, 732, 843, 1125, 1272
BlpI GCTNAGC 1 cut(s) 1018
BlsI GCNGC 6 cut(s) 520, 523, 733, 844, 1126, 1273
BmcAI AGTACT 2 cut(s) 901, 1142
Bme1390I CCNGG 5 cut(s) 233, 249, 323, 567, 1404
BmeT110I CYCGRG 1 cut(s) 1023
BmiI GGNNCC 1 cut(s) 673
BmrFI CCNGG 5 cut(s) 233, 249, 323, 567, 1404
BmsI GCATC 3 cut(s) 217, 978, 979
BpiI GAAGAC 1 cut(s) 342
BpmI CTGGAG 2 cut(s) 588, 756
Bpu1102I GCTNAGC 1 cut(s) 1018
BpuEI CTTGAG 3 cut(s) 64, 711, 1374
BpuMI CCSGG 1 cut(s) 323
BsaHI GRCGYC 1 cut(s) 540
BsaJI CCNNGG 3 cut(s) 180, 231, 247
BsaWI WCCGGW 3 cut(s) 289, 370, 859
BsaXI ACNNNNNCTCC 2 cut(s) 243, 273
Bsc4I CCNNNNNNNGG 1 cut(s) 238
Bse1I ACTGG 3 cut(s) 243, 1138, 1148
BseBI CCWGG 4 cut(s) 233, 249, 567, 1404
BseDI CCNNGG 3 cut(s) 180, 231, 247
BseGI GGATG 4 cut(s) 348, 969, 1135, 1205
BseLI CCNNNNNNNGG 1 cut(s) 238
BseMII CTCAG 5 cut(s) 134, 541, 566, 924, 1032
BseNI ACTGG 3 cut(s) 243, 1138, 1148
BseRI GAGGAG 2 cut(s) 614, 691
BseX3I CGGCCG 2 cut(s) 177, 843
BseXI GCAGC 4 cut(s) 508, 530, 718, 1258
Bsh1285I CGRYCG 2 cut(s) 180, 846
BshFI GGCC 2 cut(s) 179, 845
BsiEI CGRYCG 2 cut(s) 180, 846
BsiHKCI CYCGRG 1 cut(s) 1023
BsiSI CCGG 5 cut(s) 290, 322, 371, 828, 860
BslFI GGGAC 2 cut(s) 84, 132
BslI CCNNNNNNNGG 1 cut(s) 238
BsmAI GTCTC 2 cut(s) 40, 179
BsmFI GGGAC 2 cut(s) 84, 132
BsmI GAATGC 1 cut(s) 775
BsnI GGCC 2 cut(s) 179, 845
BsoBI CYCGRG 1 cut(s) 1023
Bsp143I GATC 5 cut(s) 6, 20, 196, 430, 1232
Bsp1720I GCTNAGC 1 cut(s) 1018
BspACI CCGC 5 cut(s) 842, 998, 1124, 1127, 1274
BspANI GGCC 2 cut(s) 179, 845
BspCNI CTCAG 5 cut(s) 133, 540, 565, 923, 1031
BspHI TCATGA 1 cut(s) 166
BspLI GGNNCC 1 cut(s) 673
BspPI GGATC 2 cut(s) 15, 438
BspQI GCTCTTC 1 cut(s) 1341
BsrI ACTGG 3 cut(s) 243, 1138, 1148
BssECI CCNNGG 3 cut(s) 180, 231, 247
BssMI GATC 5 cut(s) 6, 20, 196, 430, 1232
BssNI GRCGYC 1 cut(s) 540
Bst2UI CCWGG 4 cut(s) 233, 249, 567, 1404
Bst4CI ACNGT 6 cut(s) 671, 781, 887, 918, 959, 983
Bst6I CTCTTC 1 cut(s) 1341
BstACI GRCGYC 1 cut(s) 540
BstC8I GCNNGC 1 cut(s) 1260
BstDEI CTNAG 7 cut(s) 120, 527, 552, 910, 1018, 1113, 1229
BstDSI CCRYGG 1 cut(s) 180
BstF5I GGATG 4 cut(s) 348, 969, 1135, 1205
BstKTI GATC 5 cut(s) 9, 23, 199, 433, 1235
BstMAI GTCTC 2 cut(s) 40, 179
BstMBI GATC 5 cut(s) 6, 20, 196, 430, 1232
BstMCI CGRYCG 2 cut(s) 180, 846
BstMWI GCNNNNNNNGC 2 cut(s) 518, 1268
BstNI CCWGG 4 cut(s) 233, 249, 567, 1404
BstSCI CCNGG 5 cut(s) 231, 247, 321, 565, 1402
BstV1I GCAGC 4 cut(s) 508, 530, 718, 1258
BstV2I GAAGAC 1 cut(s) 342
BstX2I RGATCY 2 cut(s) 20, 1232
BstYI RGATCY 2 cut(s) 20, 1232
BstZI CGGCCG 2 cut(s) 177, 843
BsuI GTATCC 1 cut(s) 971
BsuRI GGCC 2 cut(s) 179, 845
BtgI CCRYGG 1 cut(s) 180
BtgZI GCGATG 1 cut(s) 493
BtsCI GGATG 4 cut(s) 348, 969, 1135, 1205
BtsIMutI CAGTG 1 cut(s) 620
Cac8I GCNNGC 1 cut(s) 1260
CaiI CAGNNNCTG 3 cut(s) 238, 521, 1255
CciI TCATGA 1 cut(s) 166
CseI GACGC 1 cut(s) 424
Csp6I GTAC 7 cut(s) 400, 556, 777, 900, 1013, 1117, 1141
CviAII CATG 3 cut(s) 167, 315, 1412
CviQI GTAC 7 cut(s) 400, 556, 777, 900, 1013, 1117, 1141
DdeI CTNAG 7 cut(s) 120, 527, 552, 910, 1018, 1113, 1229
DpnI GATC 5 cut(s) 8, 22, 198, 432, 1234
DpnII GATC 5 cut(s) 6, 20, 196, 430, 1232
EaeI YGGCCR 2 cut(s) 177, 843
EagI CGGCCG 2 cut(s) 177, 843
Eam1104I CTCTTC 1 cut(s) 1341
EarI CTCTTC 1 cut(s) 1341
EciI GGCGGA 1 cut(s) 1142
EclXI CGGCCG 2 cut(s) 177, 843
Eco52I CGGCCG 2 cut(s) 177, 843
Eco57I CTGAAG 1 cut(s) 498
Eco88I CYCGRG 1 cut(s) 1023
EcoRII CCWGG 4 cut(s) 231, 247, 565, 1402
FaeI CATG 3 cut(s) 170, 318, 1415
FalI AAGNNNNNCTT 2 cut(s) 454, 486
FaqI GGGAC 2 cut(s) 84, 132
FatI CATG 3 cut(s) 166, 314, 1411
FbaI TGATCA 1 cut(s) 196
FblI GTMKAC 2 cut(s) 65, 173
Fnu4HI GCNGC 6 cut(s) 519, 522, 732, 843, 1125, 1272
FokI GGATG 4 cut(s) 335, 956, 1142, 1212
Fsp4HI GCNGC 6 cut(s) 519, 522, 732, 843, 1125, 1272
FspBI CTAG 3 cut(s) 18, 39, 1343
GluI GCNGC 6 cut(s) 519, 522, 732, 843, 1125, 1272
GsuI CTGGAG 2 cut(s) 588, 756
HaeIII GGCC 2 cut(s) 179, 845
HapII CCGG 5 cut(s) 290, 322, 371, 828, 860
HgaI GACGC 1 cut(s) 424
Hin1I GRCGYC 1 cut(s) 540
Hin1II CATG 3 cut(s) 170, 318, 1415
HincII GTYRAC 1 cut(s) 66
HindII GTYRAC 1 cut(s) 66
HindIII AAGCTT 1 cut(s) 951
HinfI GANTC 8 cut(s) 145, 170, 293, 310, 345, 1106, 1220, 1264
HpaII CCGG 5 cut(s) 290, 322, 371, 828, 860
HphI GGTGA 1 cut(s) 385
Hpy166II GTNNAC 3 cut(s) 66, 174, 979
Hpy188I TCNGA 8 cut(s) 274, 491, 794, 879, 913, 965, 1102, 1179
Hpy188III TCNNGA 6 cut(s) 167, 329, 533, 1025, 1155, 1391
Hpy8I GTNNAC 3 cut(s) 66, 174, 979
Hpy99I CGWCG 4 cut(s) 418, 491, 542, 545
HpyAV CCTTC 2 cut(s) 160, 1360
HpyCH4III ACNGT 6 cut(s) 671, 781, 887, 918, 959, 983
HpyCH4IV ACGT 4 cut(s) 82, 454, 540, 593
HpyCH4V TGCA 2 cut(s) 992, 1258
HpyF10VI GCNNNNNNNGC 2 cut(s) 518, 1268
HpyF3I CTNAG 7 cut(s) 120, 527, 552, 910, 1018, 1113, 1229
HpySE526I ACGT 4 cut(s) 82, 454, 540, 593
Hsp92I GRCGYC 1 cut(s) 540
Hsp92II CATG 3 cut(s) 170, 318, 1415
Ksp22I TGATCA 1 cut(s) 196
Kzo9I GATC 5 cut(s) 6, 20, 196, 430, 1232
LguI GCTCTTC 1 cut(s) 1341
LmnI GCTCC 1 cut(s) 862
Lsp1109I GCAGC 4 cut(s) 508, 530, 718, 1258
LweI GCATC 3 cut(s) 217, 978, 979
MaeI CTAG 3 cut(s) 18, 39, 1343
MaeII ACGT 4 cut(s) 82, 454, 540, 593
MaeIII GTNAC 5 cut(s) 263, 317, 781, 983, 1036
MalI GATC 5 cut(s) 8, 22, 198, 432, 1234
MboI GATC 5 cut(s) 6, 20, 196, 430, 1232
MfeI CAATTG 1 cut(s) 708
MflI RGATCY 2 cut(s) 20, 1232
MluCI AATT 8 cut(s) 58, 69, 281, 660, 685, 708, 835, 1370
MlyI GAGTC 2 cut(s) 154, 179
MmeI TCCRAC 3 cut(s) 469, 576, 857
MseI TTAA 4 cut(s) 504, 684, 1311, 1329
MslI CAYNNNNRTG 2 cut(s) 974, 1064
MspA1I CMGCKG 1 cut(s) 521
MspI CCGG 5 cut(s) 290, 322, 371, 828, 860
MspR9I CCNGG 5 cut(s) 233, 249, 323, 567, 1404
MunI CAATTG 1 cut(s) 708
Mva1269I GAATGC 1 cut(s) 775
MvaI CCWGG 4 cut(s) 233, 249, 567, 1404
MwoI GCNNNNNNNGC 2 cut(s) 518, 1268
NciI CCSGG 1 cut(s) 323
NdeII GATC 5 cut(s) 6, 20, 196, 430, 1232
NlaIII CATG 3 cut(s) 170, 318, 1415
NlaIV GGNNCC 1 cut(s) 673
PaeR7I CTCGAG 1 cut(s) 1023
PagI TCATGA 1 cut(s) 166
PciSI GCTCTTC 1 cut(s) 1341
PcsI WCGNNNNNNNCGW 1 cut(s) 1021
PctI GAATGC 1 cut(s) 775
PfeI GAWTC 6 cut(s) 293, 310, 345, 1106, 1220, 1264
PflFI GACNNNGTC 1 cut(s) 539
PflMI CCANNNNNTGG 1 cut(s) 238
PkrI GCNGC 6 cut(s) 520, 523, 733, 844, 1126, 1273
PleI GAGTC 2 cut(s) 153, 178
PpsI GAGTC 2 cut(s) 153, 178
Psp6I CCWGG 4 cut(s) 231, 247, 565, 1402
PspGI CCWGG 4 cut(s) 231, 247, 565, 1402
PspN4I GGNNCC 1 cut(s) 673
PstNI CAGNNNCTG 3 cut(s) 238, 521, 1255
PsuI RGATCY 2 cut(s) 20, 1232
PsyI GACNNNGTC 1 cut(s) 539
PvuII CAGCTG 1 cut(s) 521
RsaI GTAC 7 cut(s) 401, 557, 778, 901, 1014, 1118, 1142
RsaNI GTAC 7 cut(s) 400, 556, 777, 900, 1013, 1117, 1141
RseI CAYNNNNRTG 2 cut(s) 974, 1064
SalI GTCGAC 1 cut(s) 64
SapI GCTCTTC 1 cut(s) 1341
SaqAI TTAA 4 cut(s) 504, 684, 1311, 1329
SatI GCNGC 6 cut(s) 519, 522, 732, 843, 1125, 1272
Sau3AI GATC 5 cut(s) 6, 20, 196, 430, 1232
ScaI AGTACT 2 cut(s) 901, 1142
SchI GAGTC 2 cut(s) 154, 179
ScrFI CCNGG 5 cut(s) 233, 249, 323, 567, 1404
SfaNI GCATC 3 cut(s) 217, 978, 979
Sfr274I CTCGAG 1 cut(s) 1023
SlaI CTCGAG 1 cut(s) 1023
SmiMI CAYNNNNRTG 2 cut(s) 974, 1064
SmlI CTYRAG 4 cut(s) 43, 726, 1023, 1389
SmoI CTYRAG 4 cut(s) 43, 726, 1023, 1389
Sse9I AATT 8 cut(s) 58, 69, 281, 660, 685, 708, 835, 1370
SsiI CCGC 5 cut(s) 842, 998, 1124, 1127, 1274
SspMI CTAG 3 cut(s) 18, 39, 1343
StyD4I CCNGG 5 cut(s) 231, 247, 321, 565, 1402
TaaI ACNGT 6 cut(s) 671, 781, 887, 918, 959, 983
TaiI ACGT 4 cut(s) 85, 457, 543, 596
TaqI TCGA 5 cut(s) 65, 225, 1024, 1154, 1188
TasI AATT 8 cut(s) 58, 69, 281, 660, 685, 708, 835, 1370
TatI WGTACW 4 cut(s) 776, 899, 1116, 1140
TauI GCSGC 2 cut(s) 845, 1127
TfiI GAWTC 6 cut(s) 293, 310, 345, 1106, 1220, 1264
Tru1I TTAA 4 cut(s) 504, 684, 1311, 1329
Tru9I TTAA 4 cut(s) 504, 684, 1311, 1329
TscAI CASTG 1 cut(s) 620
TseI GCWGC 4 cut(s) 518, 521, 731, 1271
TspDTI ATGAA 8 cut(s) 234, 274, 293, 653, 778, 1146, 1233, 1400
TspGWI ACGGA 5 cut(s) 152, 354, 475, 962, 1212
TspRI CASTG 1 cut(s) 620
Tth111I GACNNNGTC 1 cut(s) 539
Van91I CCANNNNNTGG 1 cut(s) 238
XapI RAATTY 3 cut(s) 58, 281, 835
XhoI CTCGAG 1 cut(s) 1023
XmiI GTMKAC 2 cut(s) 65, 173
XspI CTAG 3 cut(s) 18, 39, 1343
ZraI GACGTC 1 cut(s) 541
ZrmI AGTACT 2 cut(s) 901, 1142
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.