Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8500107.1

Orthogroup ID

OG0001226

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 2196

Gene Structure 2196 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8500107.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 548 bp

atgggctatcagtacacctacttcagatcagtttcggagtactttactcttcctacttgtgatggtgttgttgtcaagggtcgggcttatggtatccgaagtatccgagtagatgggaatgatgcacttgccatgtatagtgcagtttatgctgcacgcgaaatggcaatcagtgaacagagaccaatcttaatagaggcattaacatatcgagttgggcaccattccacatcagatgattcgaccaagtatcgcccagttgatgagattgaattgtggaaagtggaacgagacccagtaactcgatttagaaaatggattgaaagaaatggttggtggagtggtgaggcagagatagaggctagaaacagtgcaagaaagcagatattacatgcaatccaagaagctgaaaaagtagagaagccaccagttgctgacatattcactgatgtatacgactgtcttccttccaatcttgttgagcaggagaaacggctaagagagacaattaagagacacccccaggattacccatctgatgttcctgt

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003826 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005759 GO:0006082 GO:0006520 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009063 GO:0009081 GO:0009083 GO:0009987 GO:0016054 GO:0016491 GO:0017086 GO:0019752 GO:0031974 GO:0032991 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043436 GO:0044237 GO:0044238 GO:0044248 GO:0044281 GO:0044282 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0046395 GO:0055114 GO:0070013 GO:0071704 GO:0098798 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko00280 ko00640 ko01100 ko01110 ko01130 map00280 map00640 map01100 map01110 map01130

Pfam Domains

Protein Families

E1_dh

Protein Analysis

183

Amino Acids

21.24

Weight (kDa)

5.87

Isoelectric Point (pI)

56.02

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001226)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G21400 AT1G21400 AT1G21400 AT1G21400 AT1G21400 AT1G21400 AT5G09300 AT5G09300 AT5G09300 AT5G09300
fragaria_vesca	FvH4_1g24490 FvH4_1g24490 FvH4_1g24490 FvH4_1g24490 FvH4_1g24490 FvH4_1g24490 FvH4_1g24490 FvH4_1g24490 FvH4_1g24490
malus_domestica	MD01G1005600.v1.1 MD15G1133900.v1.1
prunus_persica	Prupe.4G272100_v2.0.a1
pyrus_communis	pycom01g01240 pycom15g12070
rosa_chinensis	RchiOBHm_Chr2g0121681 RchiOBHm_Chr2g0121691 RchiOBHm_Chr2g0121741 RchiOBHm_Chr2g0121751
rosa_laevigata	RLG00000018629 RLG00000018630
rosa_multiflora	Rmu_co8210604.1_g000001 Rmu_co8500107.1_g000001 Rmu_sc0000315.1_g000007 Rmu_sc0002194.1_g000001 Rmu_sc0002194.1_g000003
rosa_roxburghii	Rroxscaffold_2G00122230 Rroxscaffold_2G00122280 Rroxscaffold_2G00122300 Rroxscaffold_2G00122320
rosa_rugosa	Rorug02G0234000 Rorug02G0234100
rosa_samantha	Rh2AG290900 Rh2AG291100 Rh2AG291300 Rh2AG291400 Rh2BG301700 Rh2BG301900 Rh2CG280500 Rh2CG280700 Rh2DG315500 Rh2DG315600 Rh2DG315800 Rh2DG315900
rosa_wichuraiana	Rw2G023330 Rw2G023350 Rw2G023360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	219
AccI	GTMKAC	1 cut(s)	453
AccII	CGCG	1 cut(s)	159
AcuI	CTGAAG	1 cut(s)	7
AfaI	GTAC	2 cut(s)	14, 41
AgsI	TTSAA	2 cut(s)	272, 323
AjnI	CCWGG	1 cut(s)	522
AluBI	AGCT	1 cut(s)	407
AluI	AGCT	1 cut(s)	407
Alw26I	GTCTC	4 cut(s)	175, 285, 497, 508
AlwNI	CAGNNNCTG	1 cut(s)	434
ApeKI	GCWGC	1 cut(s)	152
AsuHPI	GGTGA	1 cut(s)	356
BaeGI	GKGCMC	1 cut(s)	222
BanI	GGYRCC	1 cut(s)	219
BarI	GAAGNNNNNNTAC	1 cut(s)	37
BbsI	GAAGAC	1 cut(s)	455
BbvI	GCAGC	1 cut(s)	139
BccI	CCATC	3 cut(s)	56, 107, 541
BceAI	ACGGC	1 cut(s)	509
BciT130I	CCWGG	1 cut(s)	524
BciVI	GTATCC	2 cut(s)	104, 113
BcoDI	GTCTC	4 cut(s)	175, 285, 497, 508
BfaI	CTAG	1 cut(s)	363
BfuI	GTATCC	2 cut(s)	104, 113
BisI	GCNGC	1 cut(s)	153
BlsI	GCNGC	1 cut(s)	154
BmcAI	AGTACT	1 cut(s)	41
Bme1390I	CCNGG	1 cut(s)	524
BmiI	GGNNCC	1 cut(s)	221
BmrFI	CCNGG	1 cut(s)	524
BmrI	ACTGGG	2 cut(s)	251, 290
BmsI	GCATC	1 cut(s)	112
BmuI	ACTGGG	2 cut(s)	251, 290
BpiI	GAAGAC	1 cut(s)	455
BsaI	GGTCTC	2 cut(s)	175, 285
BsaJI	CCNNGG	1 cut(s)	522
Bse1I	ACTGG	3 cut(s)	257, 296, 428
BseBI	CCWGG	1 cut(s)	524
BseDI	CCNNGG	1 cut(s)	522
BseNI	ACTGG	3 cut(s)	257, 296, 428
BseSI	GKGCMC	1 cut(s)	222
BseXI	GCAGC	1 cut(s)	139
BsgI	GTGCAG	2 cut(s)	138, 162
Bsh1236I	CGCG	1 cut(s)	159
BshNI	GGYRCC	1 cut(s)	219
BsmAI	GTCTC	4 cut(s)	175, 285, 497, 508
Bso31I	GGTCTC	2 cut(s)	175, 285
Bsp1286I	GDGCHC	1 cut(s)	222
Bsp143I	GATC	1 cut(s)	26
BspFNI	CGCG	1 cut(s)	159
BspLI	GGNNCC	1 cut(s)	221
BspT107I	GGYRCC	1 cut(s)	219
BspTNI	GGTCTC	2 cut(s)	175, 285
BsrI	ACTGG	3 cut(s)	257, 296, 428
BssECI	CCNNGG	1 cut(s)	522
BssMI	GATC	1 cut(s)	26
BssNAI	GTATAC	1 cut(s)	454
Bst1107I	GTATAC	1 cut(s)	454
Bst2UI	CCWGG	1 cut(s)	524
Bst4CI	ACNGT	2 cut(s)	371, 461
Bst6I	CTCTTC	1 cut(s)	54
BstAPI	GCANNNNNTGC	1 cut(s)	149
BstC8I	GCNNGC	1 cut(s)	157
BstDEI	CTNAG	1 cut(s)	497
BstFNI	CGCG	1 cut(s)	159
BstKTI	GATC	1 cut(s)	29
BstMAI	GTCTC	4 cut(s)	175, 285, 497, 508
BstMBI	GATC	1 cut(s)	26
BstMWI	GCNNNNNNNGC	1 cut(s)	149
BstNI	CCWGG	1 cut(s)	524
BstNSI	RCATGY	1 cut(s)	395
BstSCI	CCNGG	1 cut(s)	522
BstSLI	GKGCMC	1 cut(s)	222
BstUI	CGCG	1 cut(s)	159
BstV1I	GCAGC	1 cut(s)	139
BstV2I	GAAGAC	1 cut(s)	455
BstZ17I	GTATAC	1 cut(s)	454
BsuI	GTATCC	2 cut(s)	104, 113
BtsIMutI	CAGTG	3 cut(s)	178, 376, 444
Cac8I	GCNNGC	1 cut(s)	157
CaiI	CAGNNNCTG	1 cut(s)	434
Csp6I	GTAC	2 cut(s)	13, 40
CviAII	CATG	2 cut(s)	133, 392
CviJI	RGCY	6 cut(s)	6, 86, 362, 407, 424, 496
CviKI_1	RGCY	6 cut(s)	6, 86, 362, 407, 424, 496
CviQI	GTAC	2 cut(s)	13, 40
DdeI	CTNAG	1 cut(s)	497
DpnI	GATC	1 cut(s)	28
DpnII	GATC	1 cut(s)	26
Eam1104I	CTCTTC	1 cut(s)	54
EarI	CTCTTC	1 cut(s)	54
Eco31I	GGTCTC	2 cut(s)	175, 285
Eco57I	CTGAAG	1 cut(s)	7
EcoRII	CCWGG	1 cut(s)	522
FaeI	CATG	2 cut(s)	136, 395
FaiI	YATR	8 cut(s)	90, 134, 138, 150, 208, 393, 440, 454
FatI	CATG	2 cut(s)	132, 391
FblI	GTMKAC	1 cut(s)	453
Fnu4HI	GCNGC	1 cut(s)	153
Fsp4HI	GCNGC	1 cut(s)	153
FspBI	CTAG	1 cut(s)	363
GluI	GCNGC	1 cut(s)	153
Hin1II	CATG	2 cut(s)	136, 395
HinfI	GANTC	1 cut(s)	239
HphI	GGTGA	1 cut(s)	356
Hpy166II	GTNNAC	3 cut(s)	15, 176, 454
Hpy188I	TCNGA	6 cut(s)	26, 37, 98, 107, 235, 538
Hpy8I	GTNNAC	3 cut(s)	15, 176, 454
HpyAV	CCTTC	1 cut(s)	477
HpyCH4III	ACNGT	2 cut(s)	371, 461
HpyCH4V	TGCA	5 cut(s)	125, 143, 155, 374, 395
HpyF10VI	GCNNNNNNNGC	1 cut(s)	149
HpyF3I	CTNAG	1 cut(s)	497
Hsp92II	CATG	2 cut(s)	136, 395
Kzo9I	GATC	1 cut(s)	26
LpnPI	CCDG	6 cut(s)	270, 309, 441, 470, 509, 536
Lsp1109I	GCAGC	1 cut(s)	139
LweI	GCATC	1 cut(s)	112
MaeI	CTAG	1 cut(s)	363
MaeIII	GTNAC	1 cut(s)	298
MalI	GATC	1 cut(s)	28
MboI	GATC	1 cut(s)	26
MboII	GAAGA	2 cut(s)	41, 455
MhlI	GDGCHC	1 cut(s)	222
MluCI	AATT	2 cut(s)	272, 507
MnlI	CCTC	3 cut(s)	190, 340, 352
MseI	TTAA	3 cut(s)	191, 203, 510
MspR9I	CCNGG	1 cut(s)	524
MvaI	CCWGG	1 cut(s)	524
MvnI	CGCG	1 cut(s)	159
MwoI	GCNNNNNNNGC	1 cut(s)	149
NdeII	GATC	1 cut(s)	26
NlaIII	CATG	2 cut(s)	136, 395
NlaIV	GGNNCC	1 cut(s)	221
NspI	RCATGY	1 cut(s)	395
PfeI	GAWTC	1 cut(s)	239
PkrI	GCNGC	1 cut(s)	154
Psp6I	CCWGG	1 cut(s)	522
PspGI	CCWGG	1 cut(s)	522
PspN4I	GGNNCC	1 cut(s)	221
PstNI	CAGNNNCTG	1 cut(s)	434
RsaI	GTAC	2 cut(s)	14, 41
RsaNI	GTAC	2 cut(s)	13, 40
SaqAI	TTAA	3 cut(s)	191, 203, 510
SatI	GCNGC	1 cut(s)	153
Sau3AI	GATC	1 cut(s)	26
ScaI	AGTACT	1 cut(s)	41
ScrFI	CCNGG	1 cut(s)	524
SduI	GDGCHC	1 cut(s)	222
SetI	ASST	2 cut(s)	20, 409
SfaNI	GCATC	1 cut(s)	112
Sse9I	AATT	2 cut(s)	272, 507
SspMI	CTAG	1 cut(s)	363
StyD4I	CCNGG	1 cut(s)	522
TaaI	ACNGT	2 cut(s)	371, 461
TaqI	TCGA	3 cut(s)	211, 242, 304
TasI	AATT	2 cut(s)	272, 507
TatI	WGTACW	2 cut(s)	12, 39
TfiI	GAWTC	1 cut(s)	239
Tru1I	TTAA	3 cut(s)	191, 203, 510
Tru9I	TTAA	3 cut(s)	191, 203, 510
TscAI	CASTG	3 cut(s)	178, 376, 451
TseI	GCWGC	1 cut(s)	152
TspRI	CASTG	3 cut(s)	178, 376, 451
XceI	RCATGY	1 cut(s)	395
XmiI	GTMKAC	1 cut(s)	453
XspI	CTAG	1 cut(s)	363
ZrmI	AGTACT	1 cut(s)	41

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.