AT5G09300

2-oxoisovalerate dehydrogenase subunit alpha 2

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
Physical Location & Seq
Reverse (-)
2884179 .. 2886880
2702 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G09300.3

Sequence Viewer

Length: 1419 bp
ATGGCTCTGCATTTGAGATCTTCTTTTTCATCAAAATCGACTTTACTCAATATTCTCAGACACAACCTCGGTTTCGGTTCTAGGAGCCACGTGACTCGGCATATCCGCCAAATCCTACCACATGACCCCCCGCTTCGAGGTTCACAGAATCCAATTAGCCGTCTCTGTAATACCATGGCGGAGCCAGAGACACTCTCTAGTTTTGTTCAGCACGAATACGCCAACAATCATCAGGTAATGGACTTTCCAGGAGGAAAGGTAGCTTTCACACCTGAGATTCAATTCATATCAGAATCTGATAAAGAGCGTGTTCCTTGCTACCGTGTTCTTGATGACAATGGCCAACTTATCACCAACAGCCAGTTTGTTCAGGTTAGCGAGGAGGTTGCGGTGAAGATATATAGCGATATGGTTACTCTTCAAATTATGGATAACATATTCTACGAAGCTCAAAGACAAGGCAGACTTTCCTTTTACGCTACTGCAATCGGTGAAGAGGCCATTAATATTGCATCAGCTGCTGCTCTCACTCCTCAAGATGTTATCTTTCCTCAGTACAGAGAGCCTGGTGTTCTACTATGGCGTGGTTTCACGCTTCAAGAATTTGCAAACCAGTGTTTTGGGAACAAATCTGATTATGGAAAAGGCAGGCAGATGCCCGTCCACTATGGCTCTAACAAGCTCAATTATTTTACCGTTTCTGCAACCATTGCTACGCAGTTACCAAACGCGGTTGGTGCTGCTTATTCCTTAAAGATGGACAAGAAGGATGCATGTGCGGTCACATATTTTGGCGATGGTGGCACGAGTGAGGGAGATTTCCATGCTGCTTTGAATATTGCAGCAGTTATGGAAGCTCCTGTTTTATTTATTTGCCGGAACAATGGATGGGCCATCAGTACTCCCACCTCAGATCAGTTCCGAAGTGATGGTGTAGTGGTCAAAGGCCGTGCTTATGGAATTCGAAGTATACGTGTGGATGGAAATGATGCACTTGCCATGTACAGTGCGGTACATACTGCTCGCGAAATGGCAATTAGAGAACAGAGGCCAATCTTGATTGAGGCCTTAACATACCGTGTAGGACACCATTCAACATCAGATGATTCCACTAGGTACCGCTCTGCAGGTGAGATAGAGTGGTGGAACAAAGCAAGAAACCCACTGTCTAGGTTTAGGACATGGATTGAAAGTAATGGCTGGTGGAGTGATAAAACGGAATCGGATCTGAGAAGCAGAATCAAAAAAGAGATGTTAGAAGCGCTCCGGGTTGCAGAGAAGACTGAGAAACCGAATCTGCAGAACATGTTCTCAGATGTCTACGATGTTCCTCCATCTAACCTCAGGGAACAAGAACTTCTGGTGAGGCAGACGATCAATAGTCACCCACAAGATTACCCATCAGATGTGCCTCTTTAG

Protein Analysis

472

Amino Acids

53.21

Weight (kDa)

6.51

Isoelectric Point (pI)

51.99

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
E1_dh PF00676 137 - 357 6.1e-70 Dehydrogenase E1 component
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 1118
Acc36I ACCTGC 1 cut(s) 1118
Acc65I GGTACC 1 cut(s) 1116
AccB1I GGYRCC 1 cut(s) 1116
AccBSI CCGCTC 1 cut(s) 1122
AccI GTMKAC 2 cut(s) 970, 1320
AccII CGCG 2 cut(s) 731, 1026
AciI CCGC 8 cut(s) 106, 131, 179, 389, 731, 779, 1010, 1120
AclWI GGATC 1 cut(s) 1233
AcoI YGGCCR 1 cut(s) 340
AcsI RAATTY 2 cut(s) 602, 960
AcvI CACGTG 1 cut(s) 91
AfaI GTAC 5 cut(s) 557, 901, 1004, 1014, 1118
AfeI AGCGCT 1 cut(s) 1263
AfiI CCNNNNNNNGG 1 cut(s) 137
AflIII ACRYGT 2 cut(s) 973, 1305
AgsI TTSAA 6 cut(s) 281, 422, 599, 835, 1095, 1190
AjnI CCWGG 2 cut(s) 247, 565
AluBI AGCT 5 cut(s) 263, 449, 518, 682, 857
AluI AGCT 5 cut(s) 263, 449, 518, 682, 857
Alw26I GTCTC 2 cut(s) 167, 182
AlwI GGATC 1 cut(s) 1233
AlwNI CAGNNNCTG 2 cut(s) 296, 521
Aor51HI AGCGCT 1 cut(s) 1263
AoxI GGCC 6 cut(s) 340, 498, 891, 946, 1049, 1065
ApeKI GCWGC 5 cut(s) 518, 521, 740, 827, 842
ApoI RAATTY 2 cut(s) 602, 960
AseI ATTAAT 1 cut(s) 504
Asp700I GAANNNNTTC 1 cut(s) 1307
Asp718I GGTACC 1 cut(s) 1116
AspLEI GCGC 1 cut(s) 1264
AspS9I GGNCC 1 cut(s) 891
AsuC2I CCSGG 1 cut(s) 1268
AsuHPI GGTGA 6 cut(s) 343, 403, 503, 1142, 1375, 1376
AsuII TTCGAA 1 cut(s) 964
AxyI CCTNAGG 1 cut(s) 1343
BalI TGGCCA 1 cut(s) 342
BanI GGYRCC 1 cut(s) 1116
BauI CACGAG 1 cut(s) 805
BbrPI CACGTG 1 cut(s) 91
BbsI GAAGAC 1 cut(s) 1286
BbvI GCAGC 5 cut(s) 505, 508, 727, 814, 854
BccI CCATC 8 cut(s) 751, 791, 882, 902, 923, 974, 1342, 1408
BceAI ACGGC 2 cut(s) 144, 933
BcgI CGANNNNNNTGC 2 cut(s) 368, 402
BciT130I CCWGG 2 cut(s) 249, 567
BcnI CCSGG 1 cut(s) 1268
BcoDI GTCTC 2 cut(s) 167, 182
BfaI CTAG 4 cut(s) 81, 198, 1113, 1170
BfmI CTRYAG 2 cut(s) 1125, 1298
BfoI RGCGCY 1 cut(s) 1265
BfuAI ACCTGC 1 cut(s) 1118
BglII AGATCT 1 cut(s) 17
BisI GCNGC 5 cut(s) 519, 522, 741, 828, 843
BlsI GCNGC 5 cut(s) 520, 523, 742, 829, 844
BmcAI AGTACT 1 cut(s) 901
Bme1390I CCNGG 3 cut(s) 249, 567, 1268
BmgT120I GGNCC 1 cut(s) 891
BmiI GGNNCC 3 cut(s) 86, 183, 1118
BmrFI CCNGG 3 cut(s) 249, 567, 1268
BmsI GCATC 4 cut(s) 521, 645, 760, 979
BpiI GAAGAC 1 cut(s) 1286
BplI GAGNNNNNCTC 2 cut(s) 179, 211
Bpu14I TTCGAA 1 cut(s) 964
BpuEI CTTGAG 1 cut(s) 519
BpuMI CCSGG 1 cut(s) 1268
BsaAI YACGTR 2 cut(s) 91, 974
BsaJI CCNNGG 2 cut(s) 67, 174
BsaXI ACNNNNNCTCC 2 cut(s) 243, 273
Bsc4I CCNNNNNNNGG 1 cut(s) 137
Bse1I ACTGG 2 cut(s) 361, 613
Bse21I CCTNAGG 1 cut(s) 1343
Bse3DI GCAATG 1 cut(s) 708
BseBI CCWGG 2 cut(s) 249, 567
BseDI CCNNGG 2 cut(s) 67, 174
BseGI GGATG 3 cut(s) 775, 893, 985
BseLI CCNNNNNNNGG 1 cut(s) 137
BseMI GCAATG 1 cut(s) 708
BseMII CTCAG 8 cut(s) 70, 264, 566, 924, 1220, 1275, 1326, 1357
BseNI ACTGG 2 cut(s) 361, 613
BseRI GAGGAG 2 cut(s) 395, 522
BseXI GCAGC 5 cut(s) 505, 508, 727, 814, 854
Bsh1236I CGCG 2 cut(s) 731, 1026
BshFI GGCC 6 cut(s) 342, 500, 893, 948, 1051, 1067
BshNI GGYRCC 1 cut(s) 1116
BsiSI CCGG 2 cut(s) 877, 1267
BslI CCNNNNNNNGG 1 cut(s) 137
BsmAI GTCTC 2 cut(s) 167, 182
BsmBI CGTCTC 1 cut(s) 167
BsnI GGCC 6 cut(s) 342, 500, 893, 948, 1051, 1067
Bsp119I TTCGAA 1 cut(s) 964
Bsp1407I TGTACA 1 cut(s) 1002
Bsp143I GATC 4 cut(s) 17, 913, 1225, 1374
Bsp19I CCATGG 1 cut(s) 174
Bsp68I TCGCGA 1 cut(s) 1026
BspACI CCGC 8 cut(s) 106, 131, 179, 389, 731, 779, 1010, 1120
BspANI GGCC 6 cut(s) 342, 500, 893, 948, 1051, 1067
BspCNI CTCAG 8 cut(s) 69, 265, 565, 923, 1221, 1276, 1325, 1356
BspFNI CGCG 2 cut(s) 731, 1026
BspLI GGNNCC 3 cut(s) 86, 183, 1118
BspMAI CTGCAG 2 cut(s) 1129, 1302
BspMI ACCTGC 1 cut(s) 1118
BspPI GGATC 1 cut(s) 1233
BspT104I TTCGAA 1 cut(s) 964
BspT107I GGYRCC 1 cut(s) 1116
BsrBI CCGCTC 1 cut(s) 1122
BsrDI GCAATG 1 cut(s) 708
BsrGI TGTACA 1 cut(s) 1002
BsrI ACTGG 2 cut(s) 361, 613
BssECI CCNNGG 2 cut(s) 67, 174
BssMI GATC 4 cut(s) 17, 913, 1225, 1374
BssNAI GTATAC 1 cut(s) 971
BssSI CACGAG 1 cut(s) 805
BssT1I CCWWGG 1 cut(s) 174
Bst1107I GTATAC 1 cut(s) 971
Bst2BI CACGAG 1 cut(s) 805
Bst2UI CCWGG 2 cut(s) 249, 567
Bst4CI ACNGT 5 cut(s) 323, 697, 1007, 1079, 1167
Bst6I CTCTTC 2 cut(s) 423, 489
BstAPI GCANNNNNTGC 2 cut(s) 518, 710
BstAUI TGTACA 1 cut(s) 1002
BstBAI YACGTR 2 cut(s) 91, 974
BstBI TTCGAA 1 cut(s) 964
BstC8I GCNNGC 2 cut(s) 650, 1024
BstDEI CTNAG 8 cut(s) 56, 273, 552, 910, 1229, 1284, 1312, 1343
BstDSI CCRYGG 1 cut(s) 174
BstF5I GGATG 3 cut(s) 775, 893, 985
BstFNI CGCG 2 cut(s) 731, 1026
BstH2I RGCGCY 1 cut(s) 1265
BstHHI GCGC 1 cut(s) 1264
BstKTI GATC 4 cut(s) 20, 916, 1228, 1377
BstMAI GTCTC 2 cut(s) 167, 182
BstMBI GATC 4 cut(s) 17, 913, 1225, 1374
BstMWI GCNNNNNNNGC 4 cut(s) 518, 710, 737, 801
BstNI CCWGG 2 cut(s) 249, 567
BstNSI RCATGY 2 cut(s) 777, 1309
BstSCI CCNGG 3 cut(s) 247, 565, 1266
BstSFI CTRYAG 2 cut(s) 1125, 1298
BstUI CGCG 2 cut(s) 731, 1026
BstV1I GCAGC 5 cut(s) 505, 508, 727, 814, 854
BstV2I GAAGAC 1 cut(s) 1286
BstX2I RGATCY 2 cut(s) 17, 1225
BstXI CCANNNNNNTGG 1 cut(s) 620
BstYI RGATCY 2 cut(s) 17, 1225
BstZ17I GTATAC 1 cut(s) 971
Bsu36I CCTNAGG 1 cut(s) 1343
BsuRI GGCC 6 cut(s) 342, 500, 893, 948, 1051, 1067
BtgI CCRYGG 1 cut(s) 174
BtgZI GCGATG 1 cut(s) 810
BtsCI GGATG 3 cut(s) 775, 893, 985
BtsIMutI CAGTG 3 cut(s) 620, 1012, 1163
BtuMI TCGCGA 1 cut(s) 1026
BveI ACCTGC 1 cut(s) 1118
Cac8I GCNNGC 2 cut(s) 650, 1024
CaiI CAGNNNCTG 2 cut(s) 296, 521
CfoI GCGC 1 cut(s) 1264
Cfr13I GGNCC 1 cut(s) 891
Csp6I GTAC 5 cut(s) 556, 900, 1003, 1013, 1117
CviAII CATG 7 cut(s) 122, 175, 774, 824, 1000, 1182, 1306
CviQI GTAC 5 cut(s) 556, 900, 1003, 1013, 1117
DdeI CTNAG 8 cut(s) 56, 273, 552, 910, 1229, 1284, 1312, 1343
DpnI GATC 4 cut(s) 19, 915, 1227, 1376
DpnII GATC 4 cut(s) 17, 913, 1225, 1374
EaeI YGGCCR 1 cut(s) 340
Eam1104I CTCTTC 2 cut(s) 423, 489
EarI CTCTTC 2 cut(s) 423, 489
EciI GGCGGA 2 cut(s) 95, 194
Eco130I CCWWGG 1 cut(s) 174
Eco147I AGGCCT 1 cut(s) 1067
Eco47III AGCGCT 1 cut(s) 1263
Eco72I CACGTG 1 cut(s) 91
Eco81I CCTNAGG 1 cut(s) 1343
EcoRI GAATTC 1 cut(s) 960
EcoRII CCWGG 2 cut(s) 247, 565
EcoT14I CCWWGG 1 cut(s) 174
EcoT22I ATGCAT 1 cut(s) 775
ErhI CCWWGG 1 cut(s) 174
Esp3I CGTCTC 1 cut(s) 167
FaeI CATG 7 cut(s) 125, 178, 777, 827, 1003, 1185, 1309
FalI AAGNNNNNCTT 2 cut(s) 450, 482
FatI CATG 7 cut(s) 121, 174, 773, 823, 999, 1181, 1305
FauI CCCGC 1 cut(s) 138
FblI GTMKAC 2 cut(s) 970, 1320
Fnu4HI GCNGC 5 cut(s) 519, 522, 741, 828, 843
FokI GGATG 3 cut(s) 782, 900, 992
Fsp4HI GCNGC 5 cut(s) 519, 522, 741, 828, 843
FspBI CTAG 4 cut(s) 81, 198, 1113, 1170
GlaI GCGC 1 cut(s) 1263
GluI GCNGC 5 cut(s) 519, 522, 741, 828, 843
HaeII RGCGCY 1 cut(s) 1265
HaeIII GGCC 6 cut(s) 342, 500, 893, 948, 1051, 1067
HapII CCGG 2 cut(s) 877, 1267
HhaI GCGC 1 cut(s) 1264
Hin1II CATG 7 cut(s) 125, 178, 777, 827, 1003, 1185, 1309
Hin6I GCGC 1 cut(s) 1262
HinP1I GCGC 1 cut(s) 1262
HinfI GANTC 8 cut(s) 94, 148, 277, 293, 1106, 1220, 1239, 1294
HpaII CCGG 2 cut(s) 877, 1267
HphI GGTGA 6 cut(s) 343, 403, 503, 1142, 1375, 1376
Hpy166II GTNNAC 4 cut(s) 143, 664, 971, 1321
Hpy188III TCNNGA 5 cut(s) 329, 536, 599, 1025, 1057
Hpy8I GTNNAC 4 cut(s) 143, 664, 971, 1321
HpyAV CCTTC 1 cut(s) 760
HpyCH4III ACNGT 5 cut(s) 323, 697, 1007, 1079, 1167
HpyCH4IV ACGT 2 cut(s) 90, 973
HpyF10VI GCNNNNNNNGC 4 cut(s) 518, 710, 737, 801
HpyF3I CTNAG 8 cut(s) 56, 273, 552, 910, 1229, 1284, 1312, 1343
HpySE526I ACGT 2 cut(s) 90, 973
Hsp92II CATG 7 cut(s) 125, 178, 777, 827, 1003, 1185, 1309
HspAI GCGC 1 cut(s) 1262
KpnI GGTACC 1 cut(s) 1120
Kzo9I GATC 4 cut(s) 17, 913, 1225, 1374
LmnI GCTCC 4 cut(s) 84, 181, 862, 1269
Lsp1109I GCAGC 5 cut(s) 505, 508, 727, 814, 854
LweI GCATC 4 cut(s) 521, 645, 760, 979
MaeI CTAG 4 cut(s) 81, 198, 1113, 1170
MaeII ACGT 2 cut(s) 90, 973
MaeIII GTNAC 5 cut(s) 91, 412, 720, 781, 1382
MalI GATC 4 cut(s) 19, 915, 1227, 1376
MbiI CCGCTC 1 cut(s) 1122
MboI GATC 4 cut(s) 17, 913, 1225, 1374
MboII GAAGA 5 cut(s) 12, 406, 410, 506, 1291
MflI RGATCY 2 cut(s) 17, 1225
MlsI TGGCCA 1 cut(s) 342
MluCI AATT 7 cut(s) 153, 281, 423, 602, 685, 960, 1035
MluNI TGGCCA 1 cut(s) 342
MlyI GAGTC 1 cut(s) 88
Mox20I TGGCCA 1 cut(s) 342
Mph1103I ATGCAT 1 cut(s) 775
MroXI GAANNNNTTC 1 cut(s) 1307
MscI TGGCCA 1 cut(s) 342
MseI TTAA 3 cut(s) 504, 752, 1070
Msp20I TGGCCA 1 cut(s) 342
MspA1I CMGCKG 1 cut(s) 518
MspI CCGG 2 cut(s) 877, 1267
MspR9I CCNGG 3 cut(s) 249, 567, 1268
MvaI CCWGG 2 cut(s) 249, 567
MvnI CGCG 2 cut(s) 731, 1026
MwoI GCNNNNNNNGC 4 cut(s) 518, 710, 737, 801
NciI CCSGG 1 cut(s) 1268
NcoI CCATGG 1 cut(s) 174
NdeII GATC 4 cut(s) 17, 913, 1225, 1374
NlaIII CATG 7 cut(s) 125, 178, 777, 827, 1003, 1185, 1309
NlaIV GGNNCC 3 cut(s) 86, 183, 1118
NmeAIII GCCGAG 1 cut(s) 76
NmuCI GTSAC 3 cut(s) 91, 781, 1382
NruI TCGCGA 1 cut(s) 1026
NsiI ATGCAT 1 cut(s) 775
NspI RCATGY 2 cut(s) 777, 1309
NspV TTCGAA 1 cut(s) 964
PaqCI CACCTGC 1 cut(s) 1118
PceI AGGCCT 1 cut(s) 1067
PciI ACATGT 1 cut(s) 1305
PcsI WCGNNNNNNNCGW 1 cut(s) 970
PdmI GAANNNNTTC 1 cut(s) 1307
PfeI GAWTC 7 cut(s) 148, 277, 293, 1106, 1220, 1239, 1294
PfoI TCCNGGA 1 cut(s) 247
PkrI GCNGC 5 cut(s) 520, 523, 742, 829, 844
PleI GAGTC 1 cut(s) 88
PmaCI CACGTG 1 cut(s) 91
PmlI CACGTG 1 cut(s) 91
PpsI GAGTC 1 cut(s) 88
Ppu21I YACGTR 2 cut(s) 91, 974
PscI ACATGT 1 cut(s) 1305
PshBI ATTAAT 1 cut(s) 504
Psp6I CCWGG 2 cut(s) 247, 565
PspCI CACGTG 1 cut(s) 91
PspGI CCWGG 2 cut(s) 247, 565
PspN4I GGNNCC 3 cut(s) 86, 183, 1118
PspPI GGNCC 1 cut(s) 891
PstI CTGCAG 2 cut(s) 1129, 1302
PstNI CAGNNNCTG 2 cut(s) 296, 521
PsuI RGATCY 2 cut(s) 17, 1225
PvuII CAGCTG 1 cut(s) 518
RruI TCGCGA 1 cut(s) 1026
RsaI GTAC 5 cut(s) 557, 901, 1004, 1014, 1118
RsaNI GTAC 5 cut(s) 556, 900, 1003, 1013, 1117
SaqAI TTAA 3 cut(s) 504, 752, 1070
SatI GCNGC 5 cut(s) 519, 522, 741, 828, 843
Sau3AI GATC 4 cut(s) 17, 913, 1225, 1374
Sau96I GGNCC 1 cut(s) 891
ScaI AGTACT 1 cut(s) 901
SchI GAGTC 1 cut(s) 88
ScrFI CCNGG 3 cut(s) 249, 567, 1268
SfaNI GCATC 4 cut(s) 521, 645, 760, 979
SfcI CTRYAG 2 cut(s) 1125, 1298
SfuI TTCGAA 1 cut(s) 964
SmlI CTYRAG 1 cut(s) 534
SmoI CTYRAG 1 cut(s) 534
Sse9I AATT 7 cut(s) 153, 281, 423, 602, 685, 960, 1035
SseBI AGGCCT 1 cut(s) 1067
SsiI CCGC 8 cut(s) 106, 131, 179, 389, 731, 779, 1010, 1120
SspI AATATT 3 cut(s) 52, 508, 838
SspMI CTAG 4 cut(s) 81, 198, 1113, 1170
StuI AGGCCT 1 cut(s) 1067
StyD4I CCNGG 3 cut(s) 247, 565, 1266
StyI CCWWGG 1 cut(s) 174
TaaI ACNGT 5 cut(s) 323, 697, 1007, 1079, 1167
TaiI ACGT 2 cut(s) 93, 976
TaqI TCGA 3 cut(s) 38, 136, 964
TasI AATT 7 cut(s) 153, 281, 423, 602, 685, 960, 1035
TatI WGTACW 3 cut(s) 555, 899, 1002
TfiI GAWTC 7 cut(s) 148, 277, 293, 1106, 1220, 1239, 1294
Tru1I TTAA 3 cut(s) 504, 752, 1070
Tru9I TTAA 3 cut(s) 504, 752, 1070
TscAI CASTG 3 cut(s) 620, 1012, 1170
TseFI GTSAC 3 cut(s) 91, 781, 1382
TseI GCWGC 5 cut(s) 518, 521, 740, 827, 842
Tsp45I GTSAC 3 cut(s) 91, 781, 1382
TspDTI ATGAA 2 cut(s) 18, 274
TspGWI ACGGA 1 cut(s) 1232
TspRI CASTG 3 cut(s) 620, 1012, 1170
VspI ATTAAT 1 cut(s) 504
XapI RAATTY 2 cut(s) 602, 960
XceI RCATGY 2 cut(s) 777, 1309
XmiI GTMKAC 2 cut(s) 970, 1320
XmnI GAANNNNTTC 1 cut(s) 1307
XspI CTAG 4 cut(s) 81, 198, 1113, 1170
ZrmI AGTACT 1 cut(s) 901
Zsp2I ATGCAT 1 cut(s) 775
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.