pycom01g01240

2-oxoisovalerate dehydrogenase subunit alpha

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr1
Physical Location & Seq
Reverse (-)
1155140 .. 1158572
3433 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom01g01240.3

Sequence Viewer

Length: 1416 bp
ATGAGGAAATCAGGTAGCAGCATTATCAAGCATTTCAAATCATCATCGTCCAGTATCATCGGATCCTTGGCTCTCACCTCTCCCACTCCACTCACTCCTCCTCCTTCATTTCCTCAAATTCTCCGAATCCCGGCGGCCGGAGATTTAAGTAATTTCTGCTCTCGCCGGTTTGAATCCGTCAAAGCAGAAACGATGCGGGATTTGGATAATACTCATCGCACTCACGATCAGGCCTTAGAGTTTCCAGAAGGAAAGGTCAAGTTCACTCCTAAAATGAGGTTCATATCTGAGACTGCTAGGGAGCGTGAGTGCTGTTATCGCATCCTTGACGACAATGGGAACCACATATTGTCTAGCAACCATGTAGAGGTCAGTGAGGAAGTTGCTGTGAAAATGTATACGAACATGGTTACTCTTCAGACCATGGACACCATTTTCTATGAAGCACAAAGGCAAGGAAGGATTTCATTCTATTTGACCACAGTCGGTGAAGAGGCCATCAATATTGCCTCGGCGGCAGCACTCACCATTGACGACATTATCTTTCCTCAGTACAGGGAGGCAGGAGTGCTATTATGGCGCGGTTTCACTCTACAAGAATTTGCAAACCAGTGTTTCAGTAACAAATCTGATTATGGAAAAGGCAGGCAGATGCCAGTCCATTATGGGTCTAACAAGCTCAATTACGTCACTGTAGCATCAACCGTGGCCTCACAACTTCCGCATGCTGTTGGTGCTGCGTATTCTTTAAAGATGGACAGGAAAAATGCATGTGTGGTCGTGTATGTTGGTGATGGCGGCACAAGTGAGGGTGACTTCCATGCTGCTTTGAATTTTGCGGCCGTTAAGGATGCTCCGGTTATATTCTTTTGTCGGAACAATGGATGGGCTATCAGTACACCTACATCAGACCAGTTTCGGAGTGATGGTGTTGTTGTCAAAGGCCGGGCCTATGGAGTTCGAAGCATCCGAGTAGACGGTAATGATGCACTTGCTGTGTATGGTGCAGTTCATGCTGCCCGCGACATGGCAATCAAGGAACAGAGACCAATCTTAATTGAGGCATTAACATATCGAGTAGGACACCATTCCACTTCAGATGATTCGACGAAGTATCGTCCAGTCGAAGAGATTGAATGGTGGAAAATGGAGCGAGACCCTATATCTCGATTTAGAAAGTGGATGGAAAACAATAGTTGGTGGAGTGATAAGCAAGAGTTAGAGGCCAGAAGCGATGCGAGGAAGCAGATATTACATGCAATCCAAGAAGCAGAAAAAGTTGATAAACCTCCAGTTGCTGACATTTTCACAGATGTATATGACTCTCCCTCTTCCCATCTCCACGAGCAGGAGAAATTGCTCAGAGACACAATTCGAAGACATCCCTGCGATTACCCGTCCGACGTGCCTCTCTAA

Protein Analysis

472

Amino Acids

53.08

Weight (kDa)

6.58

Isoelectric Point (pI)

45.94

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 2 cut(s) 398, 975
AccII CGCG 2 cut(s) 582, 1023
AciI CCGC 8 cut(s) 134, 196, 515, 582, 722, 798, 839, 1021
AclWI GGATC 2 cut(s) 57, 70
AcoI YGGCCR 2 cut(s) 135, 840
AcsI RAATTY 3 cut(s) 117, 599, 832
AcuI CTGAAG 2 cut(s) 401, 1080
AfaI GTAC 2 cut(s) 554, 898
AfiI CCNNNNNNNGG 5 cut(s) 130, 137, 367, 1027, 1348
AgsI TTSAA 4 cut(s) 37, 173, 832, 1136
AjiI CACGTC 1 cut(s) 1405
AluBI AGCT 1 cut(s) 679
AluI AGCT 1 cut(s) 679
Alw26I GTCTC 4 cut(s) 284, 1039, 1149, 1359
AlwI GGATC 2 cut(s) 57, 70
AlwNI CAGNNNCTG 1 cut(s) 1298
AoxI GGCC 8 cut(s) 135, 231, 495, 708, 840, 943, 948, 1224
ApeKI GCWGC 5 cut(s) 18, 518, 737, 824, 1016
ApoI RAATTY 3 cut(s) 117, 599, 832
Asp700I GAANNNNTTC 1 cut(s) 463
AspLEI GCGC 1 cut(s) 582
AspS9I GGNCC 1 cut(s) 948
AsuC2I CCSGG 2 cut(s) 131, 947
AsuHPI GGTGA 5 cut(s) 67, 500, 517, 803, 824
AsuII TTCGAA 2 cut(s) 961, 1375
BamHI GGATCC 1 cut(s) 62
BauI CACGAG 1 cut(s) 1343
BbsI GAAGAC 1 cut(s) 1384
BbvI GCAGC 5 cut(s) 30, 530, 724, 811, 1003
BccI CCATC 7 cut(s) 506, 748, 788, 879, 920, 1177, 1344
BceAI ACGGC 1 cut(s) 827
BcnI CCSGG 2 cut(s) 131, 947
BcoDI GTCTC 4 cut(s) 284, 1039, 1149, 1359
BfaI CTAG 2 cut(s) 297, 354
BfmI CTRYAG 1 cut(s) 693
BglI GCCNNNNNGGC 1 cut(s) 515
BisI GCNGC 9 cut(s) 19, 135, 516, 519, 738, 799, 825, 840, 1017
BlsI GCNGC 9 cut(s) 20, 136, 517, 520, 739, 800, 826, 841, 1018
Bme1390I CCNGG 2 cut(s) 131, 947
BmgBI CACGTC 1 cut(s) 1405
BmgT120I GGNCC 1 cut(s) 948
BmiI GGNNCC 2 cut(s) 64, 341
BmrFI CCNGG 2 cut(s) 131, 947
BmsI GCATC 8 cut(s) 183, 330, 642, 707, 841, 975, 976, 1225
BoxI GACNNNNGTC 1 cut(s) 482
BpiI GAAGAC 1 cut(s) 1384
BpmI CTGGAG 1 cut(s) 1275
Bpu14I TTCGAA 2 cut(s) 961, 1375
BpuMI CCSGG 2 cut(s) 131, 947
BsaI GGTCTC 2 cut(s) 1039, 1149
BsaJI CCNNGG 4 cut(s) 66, 423, 510, 705
BsaWI WCCGGW 1 cut(s) 856
BsaXI ACNNNNNCTCC 6 cut(s) 85, 115, 293, 323, 913, 943
Bsc4I CCNNNNNNNGG 5 cut(s) 130, 137, 367, 1027, 1348
Bse118I RCCGGY 1 cut(s) 165
Bse1I ACTGG 6 cut(s) 51, 610, 656, 913, 1121, 1292
BseDI CCNNGG 4 cut(s) 66, 423, 510, 705
BseGI GGATG 6 cut(s) 321, 856, 890, 966, 1188, 1381
BseLI CCNNNNNNNGG 5 cut(s) 130, 137, 367, 1027, 1348
BseMII CTCAG 3 cut(s) 279, 563, 1375
BseNI ACTGG 6 cut(s) 51, 610, 656, 913, 1121, 1292
BseRI GAGGAG 2 cut(s) 87, 90
BseX3I CGGCCG 2 cut(s) 135, 840
BseXI GCAGC 5 cut(s) 30, 530, 724, 811, 1003
BsgI GTGCAG 1 cut(s) 1026
Bsh1236I CGCG 2 cut(s) 582, 1023
Bsh1285I CGRYCG 2 cut(s) 138, 843
BshFI GGCC 8 cut(s) 137, 233, 497, 710, 842, 945, 950, 1226
BsiEI CGRYCG 2 cut(s) 138, 843
BsiSI CCGG 5 cut(s) 131, 138, 166, 857, 946
BslI CCNNNNNNNGG 5 cut(s) 130, 137, 367, 1027, 1348
BsmAI GTCTC 4 cut(s) 284, 1039, 1149, 1359
BsnI GGCC 8 cut(s) 137, 233, 497, 710, 842, 945, 950, 1226
Bso31I GGTCTC 2 cut(s) 1039, 1149
Bsp119I TTCGAA 2 cut(s) 961, 1375
Bsp143I GATC 2 cut(s) 62, 226
Bsp19I CCATGG 1 cut(s) 423
BspACI CCGC 8 cut(s) 134, 196, 515, 582, 722, 798, 839, 1021
BspANI GGCC 8 cut(s) 137, 233, 497, 710, 842, 945, 950, 1226
BspCNI CTCAG 3 cut(s) 280, 562, 1374
BspFNI CGCG 2 cut(s) 582, 1023
BspLI GGNNCC 2 cut(s) 64, 341
BspPI GGATC 2 cut(s) 57, 70
BspT104I TTCGAA 2 cut(s) 961, 1375
BspTNI GGTCTC 2 cut(s) 1039, 1149
BsrFI RCCGGY 1 cut(s) 165
BsrI ACTGG 6 cut(s) 51, 610, 656, 913, 1121, 1292
BssAI RCCGGY 1 cut(s) 165
BssECI CCNNGG 4 cut(s) 66, 423, 510, 705
BssMI GATC 2 cut(s) 62, 226
BssNAI GTATAC 1 cut(s) 399
BssSI CACGAG 1 cut(s) 1343
BssT1I CCWWGG 2 cut(s) 66, 423
Bst1107I GTATAC 1 cut(s) 399
Bst2BI CACGAG 1 cut(s) 1343
Bst4CI ACNGT 4 cut(s) 484, 694, 706, 980
Bst6I CTCTTC 4 cut(s) 420, 486, 1122, 1336
BstAPI GCANNNNNTGC 1 cut(s) 1013
BstBI TTCGAA 2 cut(s) 961, 1375
BstC8I GCNNGC 3 cut(s) 647, 726, 1021
BstDEI CTNAG 4 cut(s) 235, 288, 549, 1361
BstDSI CCRYGG 2 cut(s) 423, 705
BstF5I GGATG 6 cut(s) 321, 856, 890, 966, 1188, 1381
BstFNI CGCG 2 cut(s) 582, 1023
BstHHI GCGC 1 cut(s) 582
BstKTI GATC 2 cut(s) 65, 229
BstMAI GTCTC 4 cut(s) 284, 1039, 1149, 1359
BstMBI GATC 2 cut(s) 62, 226
BstMCI CGRYCG 2 cut(s) 138, 843
BstMWI GCNNNNNNNGC 5 cut(s) 318, 515, 577, 734, 1013
BstNSI RCATGY 3 cut(s) 728, 774, 1259
BstPAI GACNNNNGTC 1 cut(s) 482
BstSCI CCNGG 2 cut(s) 129, 945
BstSFI CTRYAG 1 cut(s) 693
BstUI CGCG 2 cut(s) 582, 1023
BstV1I GCAGC 5 cut(s) 30, 530, 724, 811, 1003
BstV2I GAAGAC 1 cut(s) 1384
BstX2I RGATCY 1 cut(s) 62
BstYI RGATCY 1 cut(s) 62
BstZ17I GTATAC 1 cut(s) 399
BstZI CGGCCG 2 cut(s) 135, 840
BsuRI GGCC 8 cut(s) 137, 233, 497, 710, 842, 945, 950, 1226
BtgI CCRYGG 2 cut(s) 423, 705
BtgZI GCGATG 2 cut(s) 200, 1248
BtrI CACGTC 1 cut(s) 1405
BtsCI GGATG 6 cut(s) 321, 856, 890, 966, 1188, 1381
BtsIMutI CAGTG 3 cut(s) 379, 617, 690
Cac8I GCNNGC 3 cut(s) 647, 726, 1021
CaiI CAGNNNCTG 1 cut(s) 1298
CfoI GCGC 1 cut(s) 582
Cfr10I RCCGGY 1 cut(s) 165
Cfr13I GGNCC 1 cut(s) 948
Csp6I GTAC 2 cut(s) 553, 897
CviAII CATG 9 cut(s) 362, 406, 424, 725, 771, 821, 1013, 1027, 1256
CviQI GTAC 2 cut(s) 553, 897
DdeI CTNAG 4 cut(s) 235, 288, 549, 1361
DpnI GATC 2 cut(s) 64, 228
DpnII GATC 2 cut(s) 62, 226
DraI TTTAAA 1 cut(s) 750
EaeI YGGCCR 2 cut(s) 135, 840
EagI CGGCCG 2 cut(s) 135, 840
Eam1104I CTCTTC 4 cut(s) 420, 486, 1122, 1336
EarI CTCTTC 4 cut(s) 420, 486, 1122, 1336
EclXI CGGCCG 2 cut(s) 135, 840
Eco130I CCWWGG 2 cut(s) 66, 423
Eco147I AGGCCT 1 cut(s) 233
Eco31I GGTCTC 2 cut(s) 1039, 1149
Eco52I CGGCCG 2 cut(s) 135, 840
Eco57I CTGAAG 2 cut(s) 401, 1080
EcoT14I CCWWGG 2 cut(s) 66, 423
EcoT22I ATGCAT 1 cut(s) 772
ErhI CCWWGG 2 cut(s) 66, 423
FaeI CATG 9 cut(s) 365, 409, 427, 728, 774, 824, 1016, 1030, 1259
FatI CATG 9 cut(s) 361, 405, 423, 724, 770, 820, 1012, 1026, 1255
FauI CCCGC 2 cut(s) 189, 1028
FblI GTMKAC 2 cut(s) 398, 975
Fnu4HI GCNGC 9 cut(s) 19, 135, 516, 519, 738, 799, 825, 840, 1017
FokI GGATG 6 cut(s) 308, 863, 897, 953, 1195, 1368
Fsp4HI GCNGC 9 cut(s) 19, 135, 516, 519, 738, 799, 825, 840, 1017
FspBI CTAG 2 cut(s) 297, 354
GlaI GCGC 1 cut(s) 581
GluI GCNGC 9 cut(s) 19, 135, 516, 519, 738, 799, 825, 840, 1017
GsuI CTGGAG 1 cut(s) 1275
HaeIII GGCC 8 cut(s) 137, 233, 497, 710, 842, 945, 950, 1226
HapII CCGG 5 cut(s) 131, 138, 166, 857, 946
HhaI GCGC 1 cut(s) 582
Hin1II CATG 9 cut(s) 365, 409, 427, 728, 774, 824, 1016, 1030, 1259
Hin6I GCGC 1 cut(s) 580
HinP1I GCGC 1 cut(s) 580
HinfI GANTC 4 cut(s) 126, 173, 1103, 1322
HpaII CCGG 5 cut(s) 131, 138, 166, 857, 946
HphI GGTGA 5 cut(s) 67, 500, 517, 803, 824
Hpy166II GTNNAC 4 cut(s) 264, 399, 899, 976
Hpy188III TCNNGA 3 cut(s) 224, 245, 1167
Hpy8I GTNNAC 4 cut(s) 264, 399, 899, 976
Hpy99I CGWCG 2 cut(s) 1111, 1406
HpyAV CCTTC 3 cut(s) 114, 242, 453
HpyCH4III ACNGT 4 cut(s) 484, 694, 706, 980
HpyCH4IV ACGT 2 cut(s) 687, 1404
HpyCH4V TGCA 5 cut(s) 605, 770, 989, 1007, 1259
HpyF10VI GCNNNNNNNGC 5 cut(s) 318, 515, 577, 734, 1013
HpyF3I CTNAG 4 cut(s) 235, 288, 549, 1361
HpySE526I ACGT 2 cut(s) 687, 1404
Hsp92II CATG 9 cut(s) 365, 409, 427, 728, 774, 824, 1016, 1030, 1259
HspAI GCGC 1 cut(s) 580
Kzo9I GATC 2 cut(s) 62, 226
LmnI GCTCC 3 cut(s) 301, 859, 1150
Lsp1109I GCAGC 5 cut(s) 30, 530, 724, 811, 1003
LweI GCATC 8 cut(s) 183, 330, 642, 707, 841, 975, 976, 1225
MaeI CTAG 2 cut(s) 297, 354
MaeII ACGT 2 cut(s) 687, 1404
MaeIII GTNAC 4 cut(s) 409, 620, 688, 812
MalI GATC 2 cut(s) 64, 228
MboI GATC 2 cut(s) 62, 226
MboII GAAGA 5 cut(s) 407, 503, 1139, 1323, 1389
MflI RGATCY 1 cut(s) 62
MluCI AATT 8 cut(s) 117, 151, 599, 682, 832, 1056, 1355, 1371
MlyI GAGTC 1 cut(s) 1316
MmeI TCCRAC 1 cut(s) 854
Mph1103I ATGCAT 1 cut(s) 772
MroXI GAANNNNTTC 1 cut(s) 463
MseI TTAA 5 cut(s) 146, 749, 846, 1055, 1067
MspI CCGG 5 cut(s) 131, 138, 166, 857, 946
MspR9I CCNGG 2 cut(s) 131, 947
MvnI CGCG 2 cut(s) 582, 1023
MwoI GCNNNNNNNGC 5 cut(s) 318, 515, 577, 734, 1013
NciI CCSGG 2 cut(s) 131, 947
NcoI CCATGG 1 cut(s) 423
NdeII GATC 2 cut(s) 62, 226
NlaIII CATG 9 cut(s) 365, 409, 427, 728, 774, 824, 1016, 1030, 1259
NlaIV GGNNCC 2 cut(s) 64, 341
NmeAIII GCCGAG 1 cut(s) 491
NmuCI GTSAC 2 cut(s) 688, 812
NsiI ATGCAT 1 cut(s) 772
NspI RCATGY 3 cut(s) 728, 774, 1259
NspV TTCGAA 2 cut(s) 961, 1375
PaeI GCATGC 1 cut(s) 728
PceI AGGCCT 1 cut(s) 233
PcsI WCGNNNNNNNCGW 1 cut(s) 967
PdmI GAANNNNTTC 1 cut(s) 463
PfeI GAWTC 3 cut(s) 126, 173, 1103
PkrI GCNGC 9 cut(s) 20, 136, 517, 520, 739, 800, 826, 841, 1018
PleI GAGTC 1 cut(s) 1316
PpsI GAGTC 1 cut(s) 1316
PshAI GACNNNNGTC 1 cut(s) 482
PspN4I GGNNCC 2 cut(s) 64, 341
PspPI GGNCC 1 cut(s) 948
PstNI CAGNNNCTG 1 cut(s) 1298
PsuI RGATCY 1 cut(s) 62
RsaI GTAC 2 cut(s) 554, 898
RsaNI GTAC 2 cut(s) 553, 897
SaqAI TTAA 5 cut(s) 146, 749, 846, 1055, 1067
SatI GCNGC 9 cut(s) 19, 135, 516, 519, 738, 799, 825, 840, 1017
Sau3AI GATC 2 cut(s) 62, 226
Sau96I GGNCC 1 cut(s) 948
SchI GAGTC 1 cut(s) 1316
ScrFI CCNGG 2 cut(s) 131, 947
SfaNI GCATC 8 cut(s) 183, 330, 642, 707, 841, 975, 976, 1225
SfcI CTRYAG 1 cut(s) 693
SfuI TTCGAA 2 cut(s) 961, 1375
SphI GCATGC 1 cut(s) 728
Sse9I AATT 8 cut(s) 117, 151, 599, 682, 832, 1056, 1355, 1371
SseBI AGGCCT 1 cut(s) 233
SsiI CCGC 8 cut(s) 134, 196, 515, 582, 722, 798, 839, 1021
SspI AATATT 1 cut(s) 505
SspMI CTAG 2 cut(s) 297, 354
StuI AGGCCT 1 cut(s) 233
StyD4I CCNGG 2 cut(s) 129, 945
StyI CCWWGG 2 cut(s) 66, 423
TaaI ACNGT 4 cut(s) 484, 694, 706, 980
TaiI ACGT 2 cut(s) 690, 1407
TaqI TCGA 6 cut(s) 961, 1075, 1106, 1125, 1168, 1375
TasI AATT 8 cut(s) 117, 151, 599, 682, 832, 1056, 1355, 1371
TatI WGTACW 2 cut(s) 552, 896
TauI GCSGC 4 cut(s) 137, 518, 801, 842
TfiI GAWTC 3 cut(s) 126, 173, 1103
Tru1I TTAA 5 cut(s) 146, 749, 846, 1055, 1067
Tru9I TTAA 5 cut(s) 146, 749, 846, 1055, 1067
TscAI CASTG 3 cut(s) 379, 617, 697
TseFI GTSAC 2 cut(s) 688, 812
TseI GCWGC 5 cut(s) 18, 518, 737, 824, 1016
Tsp45I GTSAC 2 cut(s) 688, 812
TspDTI ATGAA 5 cut(s) 96, 271, 456, 456, 1001
TspGWI ACGGA 1 cut(s) 166
TspRI CASTG 3 cut(s) 379, 617, 697
XapI RAATTY 3 cut(s) 117, 599, 832
XceI RCATGY 3 cut(s) 728, 774, 1259
XmiI GTMKAC 2 cut(s) 398, 975
XmnI GAANNNNTTC 1 cut(s) 463
XspI CTAG 2 cut(s) 297, 354
Zsp2I ATGCAT 1 cut(s) 772
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.