Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002194.1

Orthogroup ID

OG0001226

Physical Location & Seq

Genomic Coordinates Reverse (-)

8617 .. 8895

Gene Structure 279 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002194.1_g000003.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 279 bp

atgatggctctctgggtcaggaaatcacgagactttatgatcaaccgtttcaagtccaagaaaggttctttgggtttgatccatttcagctcttgcggttcatctttcactcgcaaatctccggtcctggttccttttccggcttcatttgctcaaaaccacagaatcccggagggagactttggaaactcgccggcccatttccgtttctgctctcgtcgttttgaatccggtaaagcagaaacgctctacgacgagggtgatgccaatcaggtataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003826 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005759 GO:0006082 GO:0006520 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009063 GO:0009081 GO:0009083 GO:0009987 GO:0016054 GO:0016491 GO:0017086 GO:0019752 GO:0031974 GO:0032991 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043436 GO:0044237 GO:0044238 GO:0044248 GO:0044281 GO:0044282 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0046395 GO:0055114 GO:0070013 GO:0071704 GO:0098798 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko00280 ko00640 ko01100 ko01110 ko01130 map00280 map00640 map01100 map01110 map01130

Pfam Domains

Protein Families

E1_dh

Protein Analysis

92

Amino Acids

10.42

Weight (kDa)

9.91

Isoelectric Point (pI)

49.55

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001226)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G21400 AT1G21400 AT1G21400 AT1G21400 AT1G21400 AT1G21400 AT5G09300 AT5G09300 AT5G09300 AT5G09300
fragaria_vesca	FvH4_1g24490 FvH4_1g24490 FvH4_1g24490 FvH4_1g24490 FvH4_1g24490 FvH4_1g24490 FvH4_1g24490 FvH4_1g24490 FvH4_1g24490
malus_domestica	MD01G1005600.v1.1 MD15G1133900.v1.1
prunus_persica	Prupe.4G272100_v2.0.a1
pyrus_communis	pycom01g01240 pycom15g12070
rosa_chinensis	RchiOBHm_Chr2g0121681 RchiOBHm_Chr2g0121691 RchiOBHm_Chr2g0121741 RchiOBHm_Chr2g0121751
rosa_laevigata	RLG00000018629 RLG00000018630
rosa_multiflora	Rmu_co8210604.1_g000001 Rmu_co8500107.1_g000001 Rmu_sc0000315.1_g000007 Rmu_sc0002194.1_g000001 Rmu_sc0002194.1_g000003
rosa_roxburghii	Rroxscaffold_2G00122230 Rroxscaffold_2G00122280 Rroxscaffold_2G00122300 Rroxscaffold_2G00122320
rosa_rugosa	Rorug02G0234000 Rorug02G0234100
rosa_samantha	Rh2AG290900 Rh2AG291100 Rh2AG291300 Rh2AG291400 Rh2BG301700 Rh2BG301900 Rh2CG280500 Rh2CG280700 Rh2DG315500 Rh2DG315600 Rh2DG315800 Rh2DG315900
rosa_wichuraiana	Rw2G023330 Rw2G023350 Rw2G023360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	96
AclWI	GGATC	1 cut(s)	73
AgsI	TTSAA	2 cut(s)	52, 227
AjnI	CCWGG	1 cut(s)	126
AjuI	GAANNNNNNNTTGG	2 cut(s)	53, 85
AluBI	AGCT	1 cut(s)	90
AluI	AGCT	1 cut(s)	90
Alw26I	GTCTC	2 cut(s)	24, 171
AlwI	GGATC	1 cut(s)	73
AoxI	GGCC	1 cut(s)	195
ArsI	GACNNNNNNTTYG	2 cut(s)	108, 140
AspS9I	GGNCC	2 cut(s)	124, 196
AsuC2I	CCSGG	1 cut(s)	170
AsuHPI	GGTGA	1 cut(s)	272
AvaII	GGWCC	1 cut(s)	124
BauI	CACGAG	1 cut(s)	27
BcgI	CGANNNNNNTGC	2 cut(s)	245, 279
BciT130I	CCWGG	1 cut(s)	128
BclI	TGATCA	1 cut(s)	39
BcnI	CCSGG	1 cut(s)	170
BcoDI	GTCTC	2 cut(s)	24, 171
Bme1390I	CCNGG	2 cut(s)	128, 170
Bme18I	GGWCC	1 cut(s)	124
BmgT120I	GGNCC	2 cut(s)	124, 196
BmiI	GGNNCC	1 cut(s)	132
BmrFI	CCNGG	2 cut(s)	128, 170
BmsI	GCATC	1 cut(s)	253
BpuMI	CCSGG	1 cut(s)	170
BsaBI	GATNNNNATC	1 cut(s)	267
BsaWI	WCCGGW	2 cut(s)	121, 230
Bse118I	RCCGGY	1 cut(s)	193
Bse8I	GATNNNNATC	1 cut(s)	267
BseBI	CCWGG	1 cut(s)	128
BseJI	GATNNNNATC	1 cut(s)	267
BshFI	GGCC	1 cut(s)	197
BsiSI	CCGG	5 cut(s)	122, 140, 170, 194, 231
BsmAI	GTCTC	2 cut(s)	24, 171
BsnI	GGCC	1 cut(s)	197
Bsp143I	GATC	2 cut(s)	39, 78
BspACI	CCGC	1 cut(s)	96
BspANI	GGCC	1 cut(s)	197
BspLI	GGNNCC	1 cut(s)	132
BspPI	GGATC	1 cut(s)	73
BsrFI	RCCGGY	1 cut(s)	193
BssAI	RCCGGY	1 cut(s)	193
BssMI	GATC	2 cut(s)	39, 78
BssSI	CACGAG	1 cut(s)	27
Bst2BI	CACGAG	1 cut(s)	27
Bst2UI	CCWGG	1 cut(s)	128
Bst4CI	ACNGT	1 cut(s)	47
BstC8I	GCNNGC	1 cut(s)	195
BstKTI	GATC	2 cut(s)	42, 81
BstMAI	GTCTC	2 cut(s)	24, 171
BstMBI	GATC	2 cut(s)	39, 78
BstMWI	GCNNNNNNNGC	1 cut(s)	149
BstNI	CCWGG	1 cut(s)	128
BstSCI	CCNGG	2 cut(s)	126, 168
BsuRI	GGCC	1 cut(s)	197
Cac8I	GCNNGC	1 cut(s)	195
Cfr10I	RCCGGY	1 cut(s)	193
Cfr13I	GGNCC	2 cut(s)	124, 196
CviJI	RGCY	4 cut(s)	8, 90, 143, 197
CviKI_1	RGCY	4 cut(s)	8, 90, 143, 197
DpnI	GATC	2 cut(s)	41, 80
DpnII	GATC	2 cut(s)	39, 78
Eco47I	GGWCC	1 cut(s)	124
EcoRII	CCWGG	1 cut(s)	126
FaiI	YATR	2 cut(s)	38, 277
FbaI	TGATCA	1 cut(s)	39
HaeIII	GGCC	1 cut(s)	197
HapII	CCGG	5 cut(s)	122, 140, 170, 194, 231
HinfI	GANTC	2 cut(s)	165, 227
HpaII	CCGG	5 cut(s)	122, 140, 170, 194, 231
HphI	GGTGA	1 cut(s)	272
Hpy188III	TCNNGA	2 cut(s)	19, 27
Hpy99I	CGWCG	2 cut(s)	222, 257
HpyCH4III	ACNGT	1 cut(s)	47
HpyF10VI	GCNNNNNNNGC	1 cut(s)	149
KroI	GCCGGC	1 cut(s)	193
KroNI	GCCGGC	1 cut(s)	195
Ksp22I	TGATCA	1 cut(s)	39
Kzo9I	GATC	2 cut(s)	39, 78
LpnPI	CCDG	9 cut(s)	4, 113, 135, 140, 153, 183, 207, 244, 257
LweI	GCATC	1 cut(s)	253
MalI	GATC	2 cut(s)	41, 80
MboI	GATC	2 cut(s)	39, 78
MnlI	CCTC	2 cut(s)	166, 250
MroNI	GCCGGC	1 cut(s)	193
MspI	CCGG	5 cut(s)	122, 140, 170, 194, 231
MspR9I	CCNGG	2 cut(s)	128, 170
MvaI	CCWGG	1 cut(s)	128
MwoI	GCNNNNNNNGC	1 cut(s)	149
NaeI	GCCGGC	1 cut(s)	195
NciI	CCSGG	1 cut(s)	170
NdeII	GATC	2 cut(s)	39, 78
NgoMIV	GCCGGC	1 cut(s)	193
NlaIV	GGNNCC	1 cut(s)	132
PdiI	GCCGGC	1 cut(s)	195
PfeI	GAWTC	2 cut(s)	165, 227
PfoI	TCCNGGA	1 cut(s)	168
Psp6I	CCWGG	1 cut(s)	126
PspGI	CCWGG	1 cut(s)	126
PspN4I	GGNNCC	1 cut(s)	132
PspPI	GGNCC	2 cut(s)	124, 196
Sau3AI	GATC	2 cut(s)	39, 78
Sau96I	GGNCC	2 cut(s)	124, 196
ScrFI	CCNGG	2 cut(s)	128, 170
SetI	ASST	3 cut(s)	67, 92, 276
SfaNI	GCATC	1 cut(s)	253
SinI	GGWCC	1 cut(s)	124
SsiI	CCGC	1 cut(s)	96
StyD4I	CCNGG	2 cut(s)	126, 168
TaaI	ACNGT	1 cut(s)	47
TfiI	GAWTC	2 cut(s)	165, 227
TspDTI	ATGAA	2 cut(s)	90, 135
TspGWI	ACGGA	1 cut(s)	194
VpaK11BI	GGWCC	1 cut(s)	124

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.