Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0001226

Physical Location & Seq

Genomic Coordinates Forward (+)

55353935 .. 55355286

Gene Structure 1352 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00122320.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 462 bp

ATGGCGATCCAAGGGAGAAGTTCACTACCGCCAACCTCAACGACGCTGGTCGTAGAGTATCCATCAAAGAAAGGTGACTTCCATGCTGCTCTAAATTTTGCGGCTGTTACGGAGGCTCCGGTTATATTCATTTGTCGGAACTACGGATGGGCTATCGGTGATGGTGTTGTTGTCAAAGGTCGGGCTTATGGAATCCGAAGTATCCGAGTAGATGGGAATGATGCACTTGCCATGTATAGTGCAATTTATGCTGCACGTGAAATGGCAATCAATGAACAGAGACCAATCTTAATAGAGGCATTAACATATCGAGTCGGACATCATTCCACATCGGATGATTCGACCAAGTATCGCCCGATTGATGAGATTGAGTGGAAAGTGGAACGAGACCCAGTAACTCGATTTAGAAAATGGATAGAACGAAATGGTTGGTGGAGTGGTGAGGCGAGAGATAGAGGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003826 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005759 GO:0006082 GO:0006520 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009063 GO:0009081 GO:0009083 GO:0009987 GO:0016054 GO:0016491 GO:0017086 GO:0019752 GO:0031974 GO:0032991 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043436 GO:0044237 GO:0044238 GO:0044248 GO:0044281 GO:0044282 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0046395 GO:0055114 GO:0070013 GO:0071704 GO:0098798 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko00280 ko00640 ko01100 ko01110 ko01130 map00280 map00640 map01100 map01110 map01130

Pfam Domains

Protein Families

E1_dh

Protein Analysis

153

Amino Acids

17.28

Weight (kDa)

8.73

Isoelectric Point (pI)

35.77

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
E1_dh	PF00676	22 - 149	5.1e-39	Dehydrogenase E1 component

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0001226)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G21400 AT1G21400 AT1G21400 AT1G21400 AT1G21400 AT1G21400 AT5G09300 AT5G09300 AT5G09300 AT5G09300
fragaria_vesca	FvH4_1g24490 FvH4_1g24490 FvH4_1g24490 FvH4_1g24490 FvH4_1g24490 FvH4_1g24490 FvH4_1g24490 FvH4_1g24490 FvH4_1g24490
malus_domestica	MD01G1005600.v1.1 MD15G1133900.v1.1
prunus_persica	Prupe.4G272100_v2.0.a1
pyrus_communis	pycom01g01240 pycom15g12070
rosa_chinensis	RchiOBHm_Chr2g0121681 RchiOBHm_Chr2g0121691 RchiOBHm_Chr2g0121741 RchiOBHm_Chr2g0121751
rosa_laevigata	RLG00000018629 RLG00000018630
rosa_multiflora	Rmu_co8210604.1_g000001 Rmu_co8500107.1_g000001 Rmu_sc0000315.1_g000007 Rmu_sc0002194.1_g000001 Rmu_sc0002194.1_g000003
rosa_roxburghii	Rroxscaffold_2G00122230 Rroxscaffold_2G00122280 Rroxscaffold_2G00122300 Rroxscaffold_2G00122320
rosa_rugosa	Rorug02G0234000 Rorug02G0234100
rosa_samantha	Rh2AG290900 Rh2AG291100 Rh2AG291300 Rh2AG291400 Rh2BG301700 Rh2BG301900 Rh2CG280500 Rh2CG280700 Rh2DG315500 Rh2DG315600 Rh2DG315800 Rh2DG315900
rosa_wichuraiana	Rw2G023330 Rw2G023350 Rw2G023360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	29, 101
AcsI	RAATTY	1 cut(s)	94
AcvI	CACGTG	1 cut(s)	257
Alw26I	GTCTC	2 cut(s)	274, 381
ApeKI	GCWGC	2 cut(s)	86, 251
ApoI	RAATTY	1 cut(s)	94
AsuHPI	GGTGA	3 cut(s)	86, 170, 452
BbrPI	CACGTG	1 cut(s)	257
BbvI	GCAGC	2 cut(s)	73, 238
BccI	CCATC	4 cut(s)	70, 141, 155, 206
BciVI	GTATCC	2 cut(s)	69, 212
BcoDI	GTCTC	2 cut(s)	274, 381
BfaI	CTAG	1 cut(s)	460
BfuI	GTATCC	2 cut(s)	69, 212
BisI	GCNGC	3 cut(s)	87, 102, 252
BlsI	GCNGC	3 cut(s)	88, 103, 253
BmiI	GGNNCC	1 cut(s)	117
BmrI	ACTGGG	1 cut(s)	386
BmsI	GCATC	1 cut(s)	211
BmuI	ACTGGG	1 cut(s)	386
BoxI	GACNNNNGTC	1 cut(s)	47
BsaAI	YACGTR	1 cut(s)	257
BsaI	GGTCTC	2 cut(s)	274, 381
BsaJI	CCNNGG	1 cut(s)	10
BsaWI	WCCGGW	1 cut(s)	118
BsaXI	ACNNNNNCTCC	2 cut(s)	100, 130
Bse1I	ACTGG	1 cut(s)	392
BseDI	CCNNGG	1 cut(s)	10
BseGI	GGATG	2 cut(s)	152, 340
BseNI	ACTGG	1 cut(s)	392
BseXI	GCAGC	2 cut(s)	73, 238
BsgI	GTGCAG	1 cut(s)	237
BsiSI	CCGG	1 cut(s)	119
BsmAI	GTCTC	2 cut(s)	274, 381
Bso31I	GGTCTC	2 cut(s)	274, 381
Bsp143I	GATC	1 cut(s)	6
BspACI	CCGC	2 cut(s)	29, 101
BspLI	GGNNCC	1 cut(s)	117
BspTNI	GGTCTC	2 cut(s)	274, 381
BsrI	ACTGG	1 cut(s)	392
BssECI	CCNNGG	1 cut(s)	10
BssMI	GATC	1 cut(s)	6
BssT1I	CCWWGG	1 cut(s)	10
BstAPI	GCANNNNNTGC	1 cut(s)	248
BstBAI	YACGTR	1 cut(s)	257
BstF5I	GGATG	2 cut(s)	152, 340
BstKTI	GATC	1 cut(s)	9
BstMAI	GTCTC	2 cut(s)	274, 381
BstMBI	GATC	1 cut(s)	6
BstMWI	GCNNNNNNNGC	1 cut(s)	248
BstPAI	GACNNNNGTC	1 cut(s)	47
BstV1I	GCAGC	2 cut(s)	73, 238
BsuI	GTATCC	2 cut(s)	69, 212
BtsCI	GGATG	2 cut(s)	152, 340
CseI	GACGC	1 cut(s)	52
CviAII	CATG	2 cut(s)	83, 232
CviJI	RGCY	5 cut(s)	104, 116, 152, 185, 459
CviKI_1	RGCY	5 cut(s)	104, 116, 152, 185, 459
DpnI	GATC	1 cut(s)	8
DpnII	GATC	1 cut(s)	6
Eco130I	CCWWGG	1 cut(s)	10
Eco31I	GGTCTC	2 cut(s)	274, 381
Eco72I	CACGTG	1 cut(s)	257
EcoT14I	CCWWGG	1 cut(s)	10
ErhI	CCWWGG	1 cut(s)	10
FaeI	CATG	2 cut(s)	86, 235
FaiI	YATR	7 cut(s)	84, 125, 189, 233, 237, 249, 307
FatI	CATG	2 cut(s)	82, 231
Fnu4HI	GCNGC	3 cut(s)	87, 102, 252
FokI	GGATG	2 cut(s)	159, 347
Fsp4HI	GCNGC	3 cut(s)	87, 102, 252
FspBI	CTAG	1 cut(s)	460
GluI	GCNGC	3 cut(s)	87, 102, 252
HapII	CCGG	1 cut(s)	119
HgaI	GACGC	1 cut(s)	52
Hin1II	CATG	2 cut(s)	86, 235
HinfI	GANTC	3 cut(s)	192, 312, 338
HpaII	CCGG	1 cut(s)	119
HphI	GGTGA	3 cut(s)	86, 170, 452
Hpy166II	GTNNAC	1 cut(s)	23
Hpy188I	TCNGA	5 cut(s)	138, 197, 206, 317, 334
Hpy8I	GTNNAC	1 cut(s)	23
Hpy99I	CGWCG	1 cut(s)	46
HpyCH4IV	ACGT	1 cut(s)	256
HpyCH4V	TGCA	3 cut(s)	224, 242, 254
HpyF10VI	GCNNNNNNNGC	1 cut(s)	248
HpySE526I	ACGT	1 cut(s)	256
Hsp92II	CATG	2 cut(s)	86, 235
Kzo9I	GATC	1 cut(s)	6
LmnI	GCTCC	1 cut(s)	121
LpnPI	CCDG	3 cut(s)	32, 132, 405
Lsp1109I	GCAGC	2 cut(s)	73, 238
LweI	GCATC	1 cut(s)	211
MaeI	CTAG	1 cut(s)	460
MaeII	ACGT	1 cut(s)	256
MaeIII	GTNAC	3 cut(s)	74, 106, 394
MalI	GATC	1 cut(s)	8
MboI	GATC	1 cut(s)	6
MluCI	AATT	2 cut(s)	94, 243
MlyI	GAGTC	1 cut(s)	321
MmeI	TCCRAC	2 cut(s)	116, 295
MnlI	CCTC	5 cut(s)	46, 106, 289, 436, 449
MseI	TTAA	2 cut(s)	290, 302
MspI	CCGG	1 cut(s)	119
MwoI	GCNNNNNNNGC	1 cut(s)	248
NdeII	GATC	1 cut(s)	6
NlaIII	CATG	2 cut(s)	86, 235
NlaIV	GGNNCC	1 cut(s)	117
NmuCI	GTSAC	1 cut(s)	74
PcsI	WCGNNNNNNNCGW	1 cut(s)	338
PfeI	GAWTC	2 cut(s)	192, 338
PkrI	GCNGC	3 cut(s)	88, 103, 253
PleI	GAGTC	1 cut(s)	320
PmaCI	CACGTG	1 cut(s)	257
PmlI	CACGTG	1 cut(s)	257
PpsI	GAGTC	1 cut(s)	320
Ppu21I	YACGTR	1 cut(s)	257
PshAI	GACNNNNGTC	1 cut(s)	47
PspCI	CACGTG	1 cut(s)	257
PspN4I	GGNNCC	1 cut(s)	117
SaqAI	TTAA	2 cut(s)	290, 302
SatI	GCNGC	3 cut(s)	87, 102, 252
Sau3AI	GATC	1 cut(s)	6
SchI	GAGTC	1 cut(s)	321
SetI	ASST	4 cut(s)	38, 76, 181, 259
SfaNI	GCATC	1 cut(s)	211
Sse9I	AATT	2 cut(s)	94, 243
SsiI	CCGC	2 cut(s)	29, 101
SspMI	CTAG	1 cut(s)	460
StyI	CCWWGG	1 cut(s)	10
TaiI	ACGT	1 cut(s)	259
TaqI	TCGA	3 cut(s)	310, 341, 400
TasI	AATT	2 cut(s)	94, 243
TauI	GCSGC	1 cut(s)	104
TfiI	GAWTC	2 cut(s)	192, 338
Tru1I	TTAA	2 cut(s)	290, 302
Tru9I	TTAA	2 cut(s)	290, 302
TseFI	GTSAC	1 cut(s)	74
TseI	GCWGC	2 cut(s)	86, 251
Tsp45I	GTSAC	1 cut(s)	74
TspDTI	ATGAA	2 cut(s)	118, 288
TspGWI	ACGGA	2 cut(s)	125, 159
XapI	RAATTY	1 cut(s)	94
XspI	CTAG	1 cut(s)	460

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.