Rw2G023360

2-oxoisovalerate dehydrogenase subunit alpha

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr2
Physical Location & Seq
Reverse (-)
34032443 .. 34040931
8489 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw2G023360.1

Sequence Viewer

Length: 1455 bp
ATGGCTCTCTGGGTCAGGAAATCACGAGACTTTATGATCAACCGTTTCAAGTCCAAGAAAGGTTCTTTGGGTTTGATCCATTTCAGCTCTTGCGGTTCATCTTTCACTCGCAAATCTCCGGTCCTGGTTCCTTTTCCGGCTTCATTTGCTCAAAACCACAGAATCCCGGAGGGAGAGTTTGGAAACTCGCCGGCCCATTTCCGTTTGTGCTCTCGTCGTTTTGAATCCGGTAAAGCAGAAACGCTCTACGACGAGGGTGATACCAATCAGGTTTTGGATTTACCAGATGGGAAGGTCAAATTTACTCCTGAAATGAGGTTCATATCTGAGTCGACTAAGGAGCGCGAGTCCTGTTATCGGGTCCTTGATGACAATGGGAAGAAAATTATGTCCAGCAACTATGTTGAGGTCAGCCGGGAAATTGCTGTAAAAATGTACACAGACATGGTGATGCTTCAAACTATGGACACCATTTTCTACGAAGCACAGAGGCAAGGAAGGATTTCCTTTTATCTGACTACAGTTGGTGAAGAAGCCATCAATATTGCATCTGCTGCAGCACTCACCTTTGATGACATTGTCCTTCCTCAGTACAGGGAGCCAGGAGTTTTAATATGGCGTGGTTTCACTGCACAAGAATTTGCAAACCAGTGTTTCAGTAACAAAGCTGATTATGGGAAAGGCAGGCAGATGCCAATCCATTATGGGTCTAACAAGCACAATTACATCACTGTATCATCACCCATAGCTACACAACTTCCACAGGCTGTTGGTGTTGCTTATTCTCTAAAAATGGACAGAAAAGATGCATGTGTGGTCACATATATTGGTGAAGGTGGCACAAGTGAGGGTGATTTCCATGCTGCTCTAAATTTTGCGGCTGTTTCGGAGGCTCCAGTCATATTCATTTGTCGGAACAATGGATGGGCTATCAGTACACCTACTTCAGACCAGTTTCGGAGTGATGGTGTTGTTGTCAAAGGTCGGGCTTATGGAATCCGAAGTATCCGAGTAGATGGGAATGATGCACTTGCCATGTATAGTGCAGTTTATGCTGCACGCGAAATGGCAATCGGTGAACAGAGACCAATCTTAATAGAGGCATTAACATATCGAGTTGGACACCATTCCACATCAGATGATTCAACCAAGTATCGGCCAGTTGATGAGATTGAACGGTGGAAAGTGGAACGAGACCCGGTAACTAGATTTGGAAAATGGATTGAAAGAAATGGTTGGTGGAGTGGTGAGGCAGAGAAAGAGGCTAGAAACAGTGCAAGAAAACAGGTGTTACATGCAATCCAAGAAGCTGAGAAAGTTGAAAAGCCACCAGTCGTTGACATGTTCACAGATGTATATGACTGTCTTCCTTCCAATCTTGTTGAGCAGGAGAAACGGCTAAGAGAGACAATTAAGAGACACCCTCAGGATTACCCATCTGATGTTCCTGTGTAA

Protein Analysis

484

Amino Acids

54.74

Weight (kDa)

7.14

Isoelectric Point (pI)

46.25

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
E1_dh PF00676 148 - 444 1.2e-94 Dehydrogenase E1 component
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 332
AccII CGCG 2 cut(s) 345, 1062
AciI CCGC 2 cut(s) 93, 878
AclWI GGATC 1 cut(s) 70
AcoI YGGCCR 1 cut(s) 1157
AcsI RAATTY 3 cut(s) 299, 638, 871
AcuI CTGAAG 1 cut(s) 930
AfaI GTAC 3 cut(s) 437, 593, 937
AfiI CCNNNNNNNGG 2 cut(s) 357, 1155
AflIII ACRYGT 1 cut(s) 1341
AgsI TTSAA 7 cut(s) 49, 224, 458, 1146, 1175, 1226, 1322
AjnI CCWGG 2 cut(s) 123, 601
AjuI GAANNNNNNNTTGG 2 cut(s) 50, 82
AluBI AGCT 4 cut(s) 87, 668, 749, 1310
AluI AGCT 4 cut(s) 87, 668, 749, 1310
Alw21I GWGCWC 1 cut(s) 212
Alw26I GTCTC 5 cut(s) 21, 1078, 1188, 1400, 1411
AlwI GGATC 1 cut(s) 70
AoxI GGCC 2 cut(s) 192, 1157
ApeKI GCWGC 4 cut(s) 554, 557, 863, 1055
ApoI RAATTY 3 cut(s) 299, 638, 871
ArsI GACNNNNNNTTYG 2 cut(s) 105, 137
Asp700I GAANNNNTTC 1 cut(s) 502
AspLEI GCGC 1 cut(s) 345
AspS9I GGNCC 3 cut(s) 121, 193, 361
AsuC2I CCSGG 3 cut(s) 167, 416, 1199
AsuHPI GGTGA 9 cut(s) 269, 460, 539, 556, 732, 842, 863, 1088, 1259
AvaII GGWCC 2 cut(s) 121, 361
AxyI CCTNAGG 1 cut(s) 1425
BarI GAAGNNNNNNTAC 2 cut(s) 928, 960
BauI CACGAG 1 cut(s) 24
BbsI GAAGAC 1 cut(s) 1358
Bbv12I GWGCWC 1 cut(s) 212
BbvI GCAGC 4 cut(s) 541, 569, 850, 1042
BccI CCATC 6 cut(s) 281, 545, 918, 959, 1010, 1444
BceAI ACGGC 1 cut(s) 1412
BciT130I CCWGG 2 cut(s) 125, 603
BciVI GTATCC 1 cut(s) 1016
BclI TGATCA 1 cut(s) 36
BcnI CCSGG 3 cut(s) 167, 416, 1199
BcoDI GTCTC 5 cut(s) 21, 1078, 1188, 1400, 1411
BfaI CTAG 2 cut(s) 1206, 1266
BfmI CTRYAG 2 cut(s) 519, 555
BfuI GTATCC 1 cut(s) 1016
BisI GCNGC 5 cut(s) 555, 558, 864, 879, 1056
BlsI GCNGC 5 cut(s) 556, 559, 865, 880, 1057
Bme1390I CCNGG 5 cut(s) 125, 167, 416, 603, 1199
Bme18I GGWCC 2 cut(s) 121, 361
BmgT120I GGNCC 3 cut(s) 121, 193, 361
BmiI GGNNCC 4 cut(s) 129, 362, 600, 894
BmrFI CCNGG 5 cut(s) 125, 167, 416, 603, 1199
BmsI GCATC 5 cut(s) 441, 557, 681, 796, 1015
BpiI GAAGAC 1 cut(s) 1358
BplI GAGNNNNNCTC 2 cut(s) 1408, 1440
BpmI CTGGAG 1 cut(s) 879
BpuMI CCSGG 3 cut(s) 167, 416, 1199
BsaBI GATNNNNATC 2 cut(s) 264, 695
BsaI GGTCTC 2 cut(s) 1078, 1188
BsaWI WCCGGW 2 cut(s) 118, 227
BsaXI ACNNNNNCTCC 6 cut(s) 161, 191, 332, 362, 952, 982
Bsc4I CCNNNNNNNGG 2 cut(s) 357, 1155
Bse118I RCCGGY 1 cut(s) 190
Bse1I ACTGG 5 cut(s) 649, 896, 952, 1160, 1331
Bse21I CCTNAGG 1 cut(s) 1425
Bse8I GATNNNNATC 2 cut(s) 264, 695
BseBI CCWGG 2 cut(s) 125, 603
BseGI GGATG 1 cut(s) 929
BseJI GATNNNNATC 2 cut(s) 264, 695
BseLI CCNNNNNNNGG 2 cut(s) 357, 1155
BseMII CTCAG 4 cut(s) 318, 602, 1302, 1439
BseNI ACTGG 5 cut(s) 649, 896, 952, 1160, 1331
BseXI GCAGC 4 cut(s) 541, 569, 850, 1042
BsgI GTGCAG 3 cut(s) 615, 1041, 1065
Bsh1236I CGCG 2 cut(s) 345, 1062
BshFI GGCC 2 cut(s) 194, 1159
BsiHKAI GWGCWC 1 cut(s) 212
BsiSI CCGG 7 cut(s) 119, 137, 167, 191, 228, 415, 1199
BslI CCNNNNNNNGG 2 cut(s) 357, 1155
BsmAI GTCTC 5 cut(s) 21, 1078, 1188, 1400, 1411
BsnI GGCC 2 cut(s) 194, 1159
Bso31I GGTCTC 2 cut(s) 1078, 1188
Bsp1286I GDGCHC 1 cut(s) 212
Bsp1407I TGTACA 1 cut(s) 435
Bsp143I GATC 2 cut(s) 36, 75
BspACI CCGC 2 cut(s) 93, 878
BspANI GGCC 2 cut(s) 194, 1159
BspCNI CTCAG 4 cut(s) 319, 601, 1303, 1438
BspFNI CGCG 2 cut(s) 345, 1062
BspLI GGNNCC 4 cut(s) 129, 362, 600, 894
BspMAI CTGCAG 1 cut(s) 559
BspPI GGATC 1 cut(s) 70
BspTNI GGTCTC 2 cut(s) 1078, 1188
BsrFI RCCGGY 1 cut(s) 190
BsrGI TGTACA 1 cut(s) 435
BsrI ACTGG 5 cut(s) 649, 896, 952, 1160, 1331
BssAI RCCGGY 1 cut(s) 190
BssMI GATC 2 cut(s) 36, 75
BssSI CACGAG 1 cut(s) 24
Bst2BI CACGAG 1 cut(s) 24
Bst2UI CCWGG 2 cut(s) 125, 603
Bst4CI ACNGT 6 cut(s) 44, 523, 733, 1179, 1274, 1364
BstAPI GCANNNNNTGC 2 cut(s) 554, 1052
BstAUI TGTACA 1 cut(s) 435
BstC8I GCNNGC 3 cut(s) 192, 686, 1060
BstDEI CTNAG 6 cut(s) 327, 336, 588, 1311, 1400, 1425
BstF5I GGATG 1 cut(s) 929
BstFNI CGCG 2 cut(s) 345, 1062
BstHHI GCGC 1 cut(s) 345
BstKTI GATC 2 cut(s) 39, 78
BstMAI GTCTC 5 cut(s) 21, 1078, 1188, 1400, 1411
BstMBI GATC 2 cut(s) 36, 75
BstMWI GCNNNNNNNGC 3 cut(s) 146, 554, 1052
BstNI CCWGG 2 cut(s) 125, 603
BstNSI RCATGY 3 cut(s) 813, 1298, 1345
BstSCI CCNGG 5 cut(s) 123, 165, 414, 601, 1197
BstSFI CTRYAG 2 cut(s) 519, 555
BstUI CGCG 2 cut(s) 345, 1062
BstV1I GCAGC 4 cut(s) 541, 569, 850, 1042
BstV2I GAAGAC 1 cut(s) 1358
Bsu36I CCTNAGG 1 cut(s) 1425
BsuI GTATCC 1 cut(s) 1016
BsuRI GGCC 2 cut(s) 194, 1159
BtsCI GGATG 1 cut(s) 929
BtsI GCAGTG 1 cut(s) 627
BtsIMutI CAGTG 4 cut(s) 627, 656, 729, 1279
Cac8I GCNNGC 3 cut(s) 192, 686, 1060
CfoI GCGC 1 cut(s) 345
Cfr10I RCCGGY 1 cut(s) 190
Cfr13I GGNCC 3 cut(s) 121, 193, 361
Csp6I GTAC 3 cut(s) 436, 592, 936
CviAII CATG 6 cut(s) 445, 810, 860, 1036, 1295, 1342
CviQI GTAC 3 cut(s) 436, 592, 936
DdeI CTNAG 6 cut(s) 327, 336, 588, 1311, 1400, 1425
DpnI GATC 2 cut(s) 38, 77
DpnII GATC 2 cut(s) 36, 75
EaeI YGGCCR 1 cut(s) 1157
Eco31I GGTCTC 2 cut(s) 1078, 1188
Eco47I GGWCC 2 cut(s) 121, 361
Eco57I CTGAAG 1 cut(s) 930
Eco81I CCTNAGG 1 cut(s) 1425
EcoO109I RGGNCCY 1 cut(s) 361
EcoRII CCWGG 2 cut(s) 123, 601
EcoT22I ATGCAT 1 cut(s) 811
FaeI CATG 6 cut(s) 448, 813, 863, 1039, 1298, 1345
FatI CATG 6 cut(s) 444, 809, 859, 1035, 1294, 1341
FbaI TGATCA 1 cut(s) 36
FblI GTMKAC 1 cut(s) 332
Fnu4HI GCNGC 5 cut(s) 555, 558, 864, 879, 1056
FokI GGATG 1 cut(s) 936
Fsp4HI GCNGC 5 cut(s) 555, 558, 864, 879, 1056
FspBI CTAG 2 cut(s) 1206, 1266
GlaI GCGC 1 cut(s) 344
GluI GCNGC 5 cut(s) 555, 558, 864, 879, 1056
GsuI CTGGAG 1 cut(s) 879
HaeIII GGCC 2 cut(s) 194, 1159
HapII CCGG 7 cut(s) 119, 137, 167, 191, 228, 415, 1199
HhaI GCGC 1 cut(s) 345
Hin1II CATG 6 cut(s) 448, 813, 863, 1039, 1298, 1345
Hin6I GCGC 1 cut(s) 343
HinP1I GCGC 1 cut(s) 343
HincII GTYRAC 2 cut(s) 333, 1339
HindII GTYRAC 2 cut(s) 333, 1339
HinfI GANTC 6 cut(s) 162, 224, 329, 347, 996, 1142
HpaII CCGG 7 cut(s) 119, 137, 167, 191, 228, 415, 1199
HphI GGTGA 9 cut(s) 269, 460, 539, 556, 732, 842, 863, 1088, 1259
Hpy166II GTNNAC 6 cut(s) 333, 438, 938, 1079, 1339, 1347
Hpy188III TCNNGA 4 cut(s) 16, 24, 308, 1427
Hpy8I GTNNAC 6 cut(s) 333, 438, 938, 1079, 1339, 1347
Hpy99I CGWCG 2 cut(s) 219, 254
HpyAV CCTTC 5 cut(s) 286, 492, 593, 827, 1380
HpyCH4III ACNGT 6 cut(s) 44, 523, 733, 1179, 1274, 1364
HpyF10VI GCNNNNNNNGC 3 cut(s) 146, 554, 1052
HpyF3I CTNAG 6 cut(s) 327, 336, 588, 1311, 1400, 1425
Hsp92II CATG 6 cut(s) 448, 813, 863, 1039, 1298, 1345
HspAI GCGC 1 cut(s) 343
KroI GCCGGC 1 cut(s) 190
KroNI GCCGGC 1 cut(s) 192
Ksp22I TGATCA 1 cut(s) 36
Kzo9I GATC 2 cut(s) 36, 75
LmnI GCTCC 3 cut(s) 340, 598, 898
Lsp1109I GCAGC 4 cut(s) 541, 569, 850, 1042
LweI GCATC 5 cut(s) 441, 557, 681, 796, 1015
MaeI CTAG 2 cut(s) 1206, 1266
MaeIII GTNAC 4 cut(s) 659, 817, 1201, 1290
MalI GATC 2 cut(s) 38, 77
MboI GATC 2 cut(s) 36, 75
MboII GAAGA 3 cut(s) 391, 542, 1358
MhlI GDGCHC 1 cut(s) 212
MluCI AATT 7 cut(s) 299, 384, 420, 638, 721, 871, 1410
MlyI GAGTC 2 cut(s) 338, 356
MmeI TCCRAC 2 cut(s) 893, 1099
Mph1103I ATGCAT 1 cut(s) 811
MroNI GCCGGC 1 cut(s) 190
MroXI GAANNNNTTC 1 cut(s) 502
MseI TTAA 4 cut(s) 611, 1094, 1106, 1413
MslI CAYNNNNRTG 2 cut(s) 443, 449
MspI CCGG 7 cut(s) 119, 137, 167, 191, 228, 415, 1199
MspR9I CCNGG 5 cut(s) 125, 167, 416, 603, 1199
MvaI CCWGG 2 cut(s) 125, 603
MvnI CGCG 2 cut(s) 345, 1062
MwoI GCNNNNNNNGC 3 cut(s) 146, 554, 1052
NaeI GCCGGC 1 cut(s) 192
NciI CCSGG 3 cut(s) 167, 416, 1199
NdeII GATC 2 cut(s) 36, 75
NgoMIV GCCGGC 1 cut(s) 190
NlaIII CATG 6 cut(s) 448, 813, 863, 1039, 1298, 1345
NlaIV GGNNCC 4 cut(s) 129, 362, 600, 894
NmuCI GTSAC 1 cut(s) 817
NsiI ATGCAT 1 cut(s) 811
NspI RCATGY 3 cut(s) 813, 1298, 1345
PciI ACATGT 1 cut(s) 1341
PdiI GCCGGC 1 cut(s) 192
PdmI GAANNNNTTC 1 cut(s) 502
PfeI GAWTC 4 cut(s) 162, 224, 996, 1142
PflFI GACNNNGTC 1 cut(s) 578
PfoI TCCNGGA 1 cut(s) 165
PkrI GCNGC 5 cut(s) 556, 559, 865, 880, 1057
PleI GAGTC 2 cut(s) 337, 355
PpsI GAGTC 2 cut(s) 337, 355
PpuMI RGGWCCY 1 cut(s) 361
PscI ACATGT 1 cut(s) 1341
Psp5II RGGWCCY 1 cut(s) 361
Psp6I CCWGG 2 cut(s) 123, 601
PspGI CCWGG 2 cut(s) 123, 601
PspN4I GGNNCC 4 cut(s) 129, 362, 600, 894
PspPI GGNCC 3 cut(s) 121, 193, 361
PspPPI RGGWCCY 1 cut(s) 361
PstI CTGCAG 1 cut(s) 559
PsyI GACNNNGTC 1 cut(s) 578
RsaI GTAC 3 cut(s) 437, 593, 937
RsaNI GTAC 3 cut(s) 436, 592, 936
RseI CAYNNNNRTG 2 cut(s) 443, 449
SalI GTCGAC 1 cut(s) 331
SaqAI TTAA 4 cut(s) 611, 1094, 1106, 1413
SatI GCNGC 5 cut(s) 555, 558, 864, 879, 1056
Sau3AI GATC 2 cut(s) 36, 75
Sau96I GGNCC 3 cut(s) 121, 193, 361
SchI GAGTC 2 cut(s) 338, 356
ScrFI CCNGG 5 cut(s) 125, 167, 416, 603, 1199
SduI GDGCHC 1 cut(s) 212
SfaNI GCATC 5 cut(s) 441, 557, 681, 796, 1015
SfcI CTRYAG 2 cut(s) 519, 555
SinI GGWCC 2 cut(s) 121, 361
SmiMI CAYNNNNRTG 2 cut(s) 443, 449
Sse9I AATT 7 cut(s) 299, 384, 420, 638, 721, 871, 1410
SsiI CCGC 2 cut(s) 93, 878
SspI AATATT 1 cut(s) 544
SspMI CTAG 2 cut(s) 1206, 1266
StyD4I CCNGG 5 cut(s) 123, 165, 414, 601, 1197
TaaI ACNGT 6 cut(s) 44, 523, 733, 1179, 1274, 1364
TaqI TCGA 2 cut(s) 332, 1114
TasI AATT 7 cut(s) 299, 384, 420, 638, 721, 871, 1410
TatI WGTACW 3 cut(s) 435, 591, 935
TauI GCSGC 1 cut(s) 881
TfiI GAWTC 4 cut(s) 162, 224, 996, 1142
Tru1I TTAA 4 cut(s) 611, 1094, 1106, 1413
Tru9I TTAA 4 cut(s) 611, 1094, 1106, 1413
TscAI CASTG 4 cut(s) 634, 656, 736, 1279
TseFI GTSAC 1 cut(s) 817
TseI GCWGC 4 cut(s) 554, 557, 863, 1055
Tsp45I GTSAC 1 cut(s) 817
TspDTI ATGAA 4 cut(s) 87, 132, 310, 895
TspGWI ACGGA 1 cut(s) 191
TspRI CASTG 4 cut(s) 634, 656, 736, 1279
Tth111I GACNNNGTC 1 cut(s) 578
VpaK11BI GGWCC 2 cut(s) 121, 361
XapI RAATTY 3 cut(s) 299, 638, 871
XceI RCATGY 3 cut(s) 813, 1298, 1345
XcmI CCANNNNNNNNNTGG 1 cut(s) 271
XmiI GTMKAC 1 cut(s) 332
XmnI GAANNNNTTC 1 cut(s) 502
XspI CTAG 2 cut(s) 1206, 1266
Zsp2I ATGCAT 1 cut(s) 811
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.