Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0001226

Physical Location & Seq

Genomic Coordinates Forward (+)

55244242 .. 55248791

Gene Structure 4550 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00122230.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 840 bp

ATGATGGCTCTCTGGGTCAGGAAATCACGAGACTTTATGATCAACCGTTTCAAGTCCAAGATGGGTTCTTTGGGTTTGATCCATTTCAGCTCTTGCGGTTCATCTTTCACTCGCAAATCTCCGGTCCAGGTTCCTTTTCCGGCTTCATTTGCTCAAAACCACAGAATCCCGGAGGGAGAGTTTGGAAACTCGCCGGCCCATTTCCGTTTCTGCTCTCGTCGTTTTGAATCCGGTAAAGCAGAAACGCTCTACGGCGAGGGTGATGCCAATCAGTCGACTAAGGAGCGCGAGTCCCGTTATCGGGTCCTTGATGACAATGGGAAGAAAATAATGTCCAGCAACTATGTTGAGGTCAGCCGGGAAATTTCTGTAAAAATGTACACGGACATGGTGATGCTTCAAACTATGGACACCATTTTCTACGAAGCACGAGAGGCAAGGAAGGATTTCCTTTTATCGACTACTGTTGGTGAAGAAGCCATCAATATTGCATCTGCTGCAGCACTCACCTTTGATGACATTGTCCTTCCTCGGGGTGATTTCCATGCTGCTTTAAATTTTGCGGCTGTTACGGAGGCTCCAGTCATATTTATTTGTCGGAACAATGGATGGGCCATCGGTCGGGCTTATGGAATCCGAAGTATCCGAGTAGATGGGAATGATGCACTTGCCATGTATAGTGCAGTTTATGCTGCACGCGAAATGGCAATCGGTGAACAGAGACCAATCTTAATAGAGGCATTAACATATCGAGTTGGACACCATTCCACATCGGATGATTCAACCAAGTATCGGCCGGTTGATGAGATTGAACGGTGGAAAGTGGAACGAGACCCGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003826 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005759 GO:0006082 GO:0006520 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009063 GO:0009081 GO:0009083 GO:0009987 GO:0016054 GO:0016491 GO:0017086 GO:0019752 GO:0031974 GO:0032991 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043436 GO:0044237 GO:0044238 GO:0044248 GO:0044281 GO:0044282 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0046395 GO:0055114 GO:0070013 GO:0071704 GO:0098798 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko00280 ko00640 ko01100 ko01110 ko01130 map00280 map00640 map01100 map01110 map01130

Pfam Domains

Protein Families

E1_dh

Protein Analysis

279

Amino Acids

31.56

Weight (kDa)

7.73

Isoelectric Point (pI)

43.57

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
E1_dh	PF00676	179 - 279	9.5e-32	Dehydrogenase E1 component

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001226)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G21400 AT1G21400 AT1G21400 AT1G21400 AT1G21400 AT1G21400 AT5G09300 AT5G09300 AT5G09300 AT5G09300
fragaria_vesca	FvH4_1g24490 FvH4_1g24490 FvH4_1g24490 FvH4_1g24490 FvH4_1g24490 FvH4_1g24490 FvH4_1g24490 FvH4_1g24490 FvH4_1g24490
malus_domestica	MD01G1005600.v1.1 MD15G1133900.v1.1
prunus_persica	Prupe.4G272100_v2.0.a1
pyrus_communis	pycom01g01240 pycom15g12070
rosa_chinensis	RchiOBHm_Chr2g0121681 RchiOBHm_Chr2g0121691 RchiOBHm_Chr2g0121741 RchiOBHm_Chr2g0121751
rosa_laevigata	RLG00000018629 RLG00000018630
rosa_multiflora	Rmu_co8210604.1_g000001 Rmu_co8500107.1_g000001 Rmu_sc0000315.1_g000007 Rmu_sc0002194.1_g000001 Rmu_sc0002194.1_g000003
rosa_roxburghii	Rroxscaffold_2G00122230 Rroxscaffold_2G00122280 Rroxscaffold_2G00122300 Rroxscaffold_2G00122320
rosa_rugosa	Rorug02G0234000 Rorug02G0234100
rosa_samantha	Rh2AG290900 Rh2AG291100 Rh2AG291300 Rh2AG291400 Rh2BG301700 Rh2BG301900 Rh2CG280500 Rh2CG280700 Rh2DG315500 Rh2DG315600 Rh2DG315800 Rh2DG315900
rosa_wichuraiana	Rw2G023330 Rw2G023350 Rw2G023360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	275
AccII	CGCG	2 cut(s)	288, 699
AciI	CCGC	2 cut(s)	96, 563
AclWI	GGATC	1 cut(s)	73
AcoI	YGGCCR	1 cut(s)	794
AcsI	RAATTY	2 cut(s)	363, 556
AfaI	GTAC	1 cut(s)	380
AfiI	CCNNNNNNNGG	5 cut(s)	300, 301, 532, 621, 792
AgsI	TTSAA	5 cut(s)	52, 227, 401, 783, 812
AjnI	CCWGG	1 cut(s)	126
AluBI	AGCT	1 cut(s)	90
AluI	AGCT	1 cut(s)	90
Alw26I	GTCTC	3 cut(s)	24, 715, 825
AlwI	GGATC	1 cut(s)	73
Ama87I	CYCGRG	1 cut(s)	531
AoxI	GGCC	3 cut(s)	195, 612, 794
ApeKI	GCWGC	4 cut(s)	497, 500, 548, 692
ApoI	RAATTY	2 cut(s)	363, 556
ArsI	GACNNNNNNTTYG	2 cut(s)	108, 140
Asp700I	GAANNNNTTC	1 cut(s)	446
AspLEI	GCGC	1 cut(s)	288
AspS9I	GGNCC	4 cut(s)	124, 196, 304, 612
AsuC2I	CCSGG	2 cut(s)	170, 359
AsuHPI	GGTGA	6 cut(s)	272, 403, 482, 499, 548, 725
AvaI	CYCGRG	1 cut(s)	531
AvaII	GGWCC	2 cut(s)	124, 304
BauI	CACGAG	2 cut(s)	27, 429
BbvI	GCAGC	4 cut(s)	484, 512, 535, 679
BccI	CCATC	5 cut(s)	55, 488, 603, 623, 647
BceAI	ACGGC	1 cut(s)	268
BcgI	CGANNNNNNTGC	2 cut(s)	245, 279
BciT130I	CCWGG	1 cut(s)	128
BciVI	GTATCC	1 cut(s)	653
BclI	TGATCA	1 cut(s)	39
BcnI	CCSGG	2 cut(s)	170, 359
BcoDI	GTCTC	3 cut(s)	24, 715, 825
BfmI	CTRYAG	1 cut(s)	498
BfuI	GTATCC	1 cut(s)	653
BisI	GCNGC	5 cut(s)	498, 501, 549, 564, 693
BlsI	GCNGC	5 cut(s)	499, 502, 550, 565, 694
Bme1390I	CCNGG	3 cut(s)	128, 170, 359
Bme18I	GGWCC	2 cut(s)	124, 304
BmeT110I	CYCGRG	1 cut(s)	531
BmgT120I	GGNCC	4 cut(s)	124, 196, 304, 612
BmiI	GGNNCC	3 cut(s)	132, 305, 579
BmrFI	CCNGG	3 cut(s)	128, 170, 359
BmsI	GCATC	4 cut(s)	253, 384, 500, 652
BpmI	CTGGAG	1 cut(s)	564
BpuMI	CCSGG	2 cut(s)	170, 359
BsaBI	GATNNNNATC	1 cut(s)	267
BsaI	GGTCTC	2 cut(s)	715, 825
BsaJI	CCNNGG	1 cut(s)	530
BsaWI	WCCGGW	2 cut(s)	121, 230
BsaXI	ACNNNNNCTCC	6 cut(s)	164, 194, 275, 305, 562, 592
Bsc4I	CCNNNNNNNGG	5 cut(s)	300, 301, 532, 621, 792
Bse118I	RCCGGY	2 cut(s)	193, 796
Bse1I	ACTGG	1 cut(s)	581
Bse8I	GATNNNNATC	1 cut(s)	267
BseBI	CCWGG	1 cut(s)	128
BseDI	CCNNGG	1 cut(s)	530
BseGI	GGATG	2 cut(s)	614, 781
BseJI	GATNNNNATC	1 cut(s)	267
BseLI	CCNNNNNNNGG	5 cut(s)	300, 301, 532, 621, 792
BseNI	ACTGG	1 cut(s)	581
BseX3I	CGGCCG	1 cut(s)	794
BseXI	GCAGC	4 cut(s)	484, 512, 535, 679
BsgI	GTGCAG	2 cut(s)	678, 702
Bsh1236I	CGCG	2 cut(s)	288, 699
Bsh1285I	CGRYCG	2 cut(s)	622, 797
BshFI	GGCC	3 cut(s)	197, 614, 796
BsiEI	CGRYCG	2 cut(s)	622, 797
BsiHKCI	CYCGRG	1 cut(s)	531
BsiSI	CCGG	7 cut(s)	122, 140, 170, 194, 231, 358, 797
BslFI	GGGAC	1 cut(s)	277
BslI	CCNNNNNNNGG	5 cut(s)	300, 301, 532, 621, 792
BsmAI	GTCTC	3 cut(s)	24, 715, 825
BsmFI	GGGAC	1 cut(s)	277
BsnI	GGCC	3 cut(s)	197, 614, 796
Bso31I	GGTCTC	2 cut(s)	715, 825
BsoBI	CYCGRG	1 cut(s)	531
Bsp1407I	TGTACA	1 cut(s)	378
Bsp143I	GATC	2 cut(s)	39, 78
BspACI	CCGC	2 cut(s)	96, 563
BspANI	GGCC	3 cut(s)	197, 614, 796
BspFNI	CGCG	2 cut(s)	288, 699
BspLI	GGNNCC	3 cut(s)	132, 305, 579
BspMAI	CTGCAG	1 cut(s)	502
BspPI	GGATC	1 cut(s)	73
BspTNI	GGTCTC	2 cut(s)	715, 825
BsrFI	RCCGGY	2 cut(s)	193, 796
BsrGI	TGTACA	1 cut(s)	378
BsrI	ACTGG	1 cut(s)	581
BssAI	RCCGGY	2 cut(s)	193, 796
BssECI	CCNNGG	1 cut(s)	530
BssMI	GATC	2 cut(s)	39, 78
BssSI	CACGAG	2 cut(s)	27, 429
Bst2BI	CACGAG	2 cut(s)	27, 429
Bst2UI	CCWGG	1 cut(s)	128
Bst4CI	ACNGT	3 cut(s)	47, 466, 816
BstAPI	GCANNNNNTGC	2 cut(s)	497, 689
BstAUI	TGTACA	1 cut(s)	378
BstC8I	GCNNGC	2 cut(s)	195, 697
BstDEI	CTNAG	1 cut(s)	279
BstF5I	GGATG	2 cut(s)	614, 781
BstFNI	CGCG	2 cut(s)	288, 699
BstHHI	GCGC	1 cut(s)	288
BstKTI	GATC	2 cut(s)	42, 81
BstMAI	GTCTC	3 cut(s)	24, 715, 825
BstMBI	GATC	2 cut(s)	39, 78
BstMCI	CGRYCG	2 cut(s)	622, 797
BstMWI	GCNNNNNNNGC	4 cut(s)	149, 434, 497, 689
BstNI	CCWGG	1 cut(s)	128
BstSCI	CCNGG	3 cut(s)	126, 168, 357
BstSFI	CTRYAG	1 cut(s)	498
BstUI	CGCG	2 cut(s)	288, 699
BstV1I	GCAGC	4 cut(s)	484, 512, 535, 679
BstZI	CGGCCG	1 cut(s)	794
BsuI	GTATCC	1 cut(s)	653
BsuRI	GGCC	3 cut(s)	197, 614, 796
BtsCI	GGATG	2 cut(s)	614, 781
Cac8I	GCNNGC	2 cut(s)	195, 697
CfoI	GCGC	1 cut(s)	288
Cfr10I	RCCGGY	2 cut(s)	193, 796
Cfr13I	GGNCC	4 cut(s)	124, 196, 304, 612
Csp6I	GTAC	1 cut(s)	379
CviAII	CATG	3 cut(s)	388, 545, 673
CviQI	GTAC	1 cut(s)	379
DdeI	CTNAG	1 cut(s)	279
DpnI	GATC	2 cut(s)	41, 80
DpnII	GATC	2 cut(s)	39, 78
DraI	TTTAAA	1 cut(s)	555
EaeI	YGGCCR	1 cut(s)	794
EagI	CGGCCG	1 cut(s)	794
EclXI	CGGCCG	1 cut(s)	794
Eco31I	GGTCTC	2 cut(s)	715, 825
Eco47I	GGWCC	2 cut(s)	124, 304
Eco52I	CGGCCG	1 cut(s)	794
Eco88I	CYCGRG	1 cut(s)	531
EcoO109I	RGGNCCY	1 cut(s)	304
EcoRII	CCWGG	1 cut(s)	126
FaeI	CATG	3 cut(s)	391, 548, 676
FaqI	GGGAC	1 cut(s)	277
FatI	CATG	3 cut(s)	387, 544, 672
FbaI	TGATCA	1 cut(s)	39
FblI	GTMKAC	1 cut(s)	275
Fnu4HI	GCNGC	5 cut(s)	498, 501, 549, 564, 693
FokI	GGATG	2 cut(s)	621, 788
Fsp4HI	GCNGC	5 cut(s)	498, 501, 549, 564, 693
GlaI	GCGC	1 cut(s)	287
GluI	GCNGC	5 cut(s)	498, 501, 549, 564, 693
GsuI	CTGGAG	1 cut(s)	564
HaeIII	GGCC	3 cut(s)	197, 614, 796
HapII	CCGG	7 cut(s)	122, 140, 170, 194, 231, 358, 797
HhaI	GCGC	1 cut(s)	288
Hin1II	CATG	3 cut(s)	391, 548, 676
Hin6I	GCGC	1 cut(s)	286
HinP1I	GCGC	1 cut(s)	286
HincII	GTYRAC	1 cut(s)	276
HindII	GTYRAC	1 cut(s)	276
HinfI	GANTC	5 cut(s)	165, 227, 290, 633, 779
HpaII	CCGG	7 cut(s)	122, 140, 170, 194, 231, 358, 797
HphI	GGTGA	6 cut(s)	272, 403, 482, 499, 548, 725
Hpy166II	GTNNAC	3 cut(s)	276, 381, 716
Hpy188I	TCNGA	4 cut(s)	600, 638, 647, 775
Hpy188III	TCNNGA	2 cut(s)	19, 27
Hpy8I	GTNNAC	3 cut(s)	276, 381, 716
Hpy99I	CGWCG	1 cut(s)	222
HpyAV	CCTTC	2 cut(s)	436, 536
HpyCH4III	ACNGT	3 cut(s)	47, 466, 816
HpyCH4V	TGCA	5 cut(s)	491, 500, 665, 683, 695
HpyF10VI	GCNNNNNNNGC	4 cut(s)	149, 434, 497, 689
HpyF3I	CTNAG	1 cut(s)	279
Hsp92II	CATG	3 cut(s)	391, 548, 676
HspAI	GCGC	1 cut(s)	286
KroI	GCCGGC	1 cut(s)	193
KroNI	GCCGGC	1 cut(s)	195
Ksp22I	TGATCA	1 cut(s)	39
Kzo9I	GATC	2 cut(s)	39, 78
LmnI	GCTCC	2 cut(s)	283, 583
Lsp1109I	GCAGC	4 cut(s)	484, 512, 535, 679
LweI	GCATC	4 cut(s)	253, 384, 500, 652
MaeIII	GTNAC	1 cut(s)	568
MalI	GATC	2 cut(s)	41, 80
MboI	GATC	2 cut(s)	39, 78
MboII	GAAGA	2 cut(s)	334, 485
MluCI	AATT	2 cut(s)	363, 556
MlyI	GAGTC	1 cut(s)	299
MmeI	TCCRAC	2 cut(s)	578, 736
MnlI	CCTC	7 cut(s)	166, 250, 343, 427, 540, 568, 730
MroNI	GCCGGC	1 cut(s)	193
MroXI	GAANNNNTTC	1 cut(s)	446
MseI	TTAA	3 cut(s)	554, 731, 743
MslI	CAYNNNNRTG	2 cut(s)	386, 392
MspI	CCGG	7 cut(s)	122, 140, 170, 194, 231, 358, 797
MspR9I	CCNGG	3 cut(s)	128, 170, 359
MvaI	CCWGG	1 cut(s)	128
MvnI	CGCG	2 cut(s)	288, 699
MwoI	GCNNNNNNNGC	4 cut(s)	149, 434, 497, 689
NaeI	GCCGGC	1 cut(s)	195
NciI	CCSGG	2 cut(s)	170, 359
NdeII	GATC	2 cut(s)	39, 78
NgoMIV	GCCGGC	1 cut(s)	193
NlaIII	CATG	3 cut(s)	391, 548, 676
NlaIV	GGNNCC	3 cut(s)	132, 305, 579
PdiI	GCCGGC	1 cut(s)	195
PdmI	GAANNNNTTC	1 cut(s)	446
PfeI	GAWTC	4 cut(s)	165, 227, 633, 779
PflFI	GACNNNGTC	1 cut(s)	521
PfoI	TCCNGGA	1 cut(s)	168
PkrI	GCNGC	5 cut(s)	499, 502, 550, 565, 694
PleI	GAGTC	1 cut(s)	298
PpsI	GAGTC	1 cut(s)	298
PpuMI	RGGWCCY	1 cut(s)	304
Psp5II	RGGWCCY	1 cut(s)	304
Psp6I	CCWGG	1 cut(s)	126
PspGI	CCWGG	1 cut(s)	126
PspN4I	GGNNCC	3 cut(s)	132, 305, 579
PspPI	GGNCC	4 cut(s)	124, 196, 304, 612
PspPPI	RGGWCCY	1 cut(s)	304
PstI	CTGCAG	1 cut(s)	502
PsyI	GACNNNGTC	1 cut(s)	521
RsaI	GTAC	1 cut(s)	380
RsaNI	GTAC	1 cut(s)	379
RseI	CAYNNNNRTG	2 cut(s)	386, 392
SalI	GTCGAC	1 cut(s)	274
SaqAI	TTAA	3 cut(s)	554, 731, 743
SatI	GCNGC	5 cut(s)	498, 501, 549, 564, 693
Sau3AI	GATC	2 cut(s)	39, 78
Sau96I	GGNCC	4 cut(s)	124, 196, 304, 612
SchI	GAGTC	1 cut(s)	299
ScrFI	CCNGG	3 cut(s)	128, 170, 359
SetI	ASST	4 cut(s)	92, 132, 354, 512
SfaNI	GCATC	4 cut(s)	253, 384, 500, 652
SfcI	CTRYAG	1 cut(s)	498
SinI	GGWCC	2 cut(s)	124, 304
SmiMI	CAYNNNNRTG	2 cut(s)	386, 392
Sse9I	AATT	2 cut(s)	363, 556
SsiI	CCGC	2 cut(s)	96, 563
SspI	AATATT	1 cut(s)	487
StyD4I	CCNGG	3 cut(s)	126, 168, 357
TaaI	ACNGT	3 cut(s)	47, 466, 816
TaqI	TCGA	3 cut(s)	275, 458, 751
TaqII	GACCGA	1 cut(s)	608
TasI	AATT	2 cut(s)	363, 556
TatI	WGTACW	1 cut(s)	378
TauI	GCSGC	1 cut(s)	566
TfiI	GAWTC	4 cut(s)	165, 227, 633, 779
Tru1I	TTAA	3 cut(s)	554, 731, 743
Tru9I	TTAA	3 cut(s)	554, 731, 743
TseI	GCWGC	4 cut(s)	497, 500, 548, 692
TspDTI	ATGAA	2 cut(s)	90, 135
TspGWI	ACGGA	3 cut(s)	194, 398, 587
Tth111I	GACNNNGTC	1 cut(s)	521
VpaK11BI	GGWCC	2 cut(s)	124, 304
XapI	RAATTY	2 cut(s)	363, 556
XmiI	GTMKAC	1 cut(s)	275
XmnI	GAANNNNTTC	1 cut(s)	446

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.