Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0001226

Physical Location & Seq

Genomic Coordinates Forward (+)

23352574 .. 23353283

Gene Structure 710 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0234100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 462 bp

ATGTCAGCGAATATTCAAAGGCCTACTTTAGGTTTAGAAAGAGAAGAGCGGCGAAAGACAAGACAATTGCATTCTAAGAAGCTACATTCCCAACTCAATCGTAGAATACCCATCACTTTGATACAACATAATGGAAGACCCACAGGTCCATATGCAGAACTATTTGTGAATGATATCAGCTTAATAGTTAGGAACCTTGCACCTCTGAATAGCAAGTTCGACATTAATATGTCCCTCCCTTGGGTCGACTACTATGTAAACAAGATGTGTATGGCAGCATTTTTAAAATTCCGTTATGATCTAAAGAAGCATTTTGAGAAATTCCCAACAGTAGATGAAGCACAAGCAAACAAGCCTGAAAAAGTTAAGACTCAAGCAGAATGGGATTTTCTATGTACTCGTTTTTCTAGTGAAGAGTTACAGGTATTTAGTGTTTTCTTATTAATTTTTTTTTTTCCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003826 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005759 GO:0006082 GO:0006520 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009063 GO:0009081 GO:0009083 GO:0009987 GO:0016054 GO:0016491 GO:0017086 GO:0019752 GO:0031974 GO:0032991 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043436 GO:0044237 GO:0044238 GO:0044248 GO:0044281 GO:0044282 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0046395 GO:0055114 GO:0070013 GO:0071704 GO:0098798 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko00280 ko00640 ko01100 ko01110 ko01130 map00280 map00640 map01100 map01110 map01130

Pfam Domains

Protein Families

E1_dh

Protein Analysis

153

Amino Acids

18.12

Weight (kDa)

9.58

Isoelectric Point (pI)

51.99

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001226)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G21400 AT1G21400 AT1G21400 AT1G21400 AT1G21400 AT1G21400 AT5G09300 AT5G09300 AT5G09300 AT5G09300
fragaria_vesca	FvH4_1g24490 FvH4_1g24490 FvH4_1g24490 FvH4_1g24490 FvH4_1g24490 FvH4_1g24490 FvH4_1g24490 FvH4_1g24490 FvH4_1g24490
malus_domestica	MD01G1005600.v1.1 MD15G1133900.v1.1
prunus_persica	Prupe.4G272100_v2.0.a1
pyrus_communis	pycom01g01240 pycom15g12070
rosa_chinensis	RchiOBHm_Chr2g0121681 RchiOBHm_Chr2g0121691 RchiOBHm_Chr2g0121741 RchiOBHm_Chr2g0121751
rosa_laevigata	RLG00000018629 RLG00000018630
rosa_multiflora	Rmu_co8210604.1_g000001 Rmu_co8500107.1_g000001 Rmu_sc0000315.1_g000007 Rmu_sc0002194.1_g000001 Rmu_sc0002194.1_g000003
rosa_roxburghii	Rroxscaffold_2G00122230 Rroxscaffold_2G00122280 Rroxscaffold_2G00122300 Rroxscaffold_2G00122320
rosa_rugosa	Rorug02G0234000 Rorug02G0234100
rosa_samantha	Rh2AG290900 Rh2AG291100 Rh2AG291300 Rh2AG291400 Rh2BG301700 Rh2BG301900 Rh2CG280500 Rh2CG280700 Rh2DG315500 Rh2DG315600 Rh2DG315800 Rh2DG315900
rosa_wichuraiana	Rw2G023330 Rw2G023350 Rw2G023360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	144
AccBSI	CCGCTC	1 cut(s)	49
AccI	GTMKAC	1 cut(s)	246
AciI	CCGC	1 cut(s)	49
AcsI	RAATTY	2 cut(s)	287, 320
AfaI	GTAC	1 cut(s)	397
AfiI	CCNNNNNNNGG	3 cut(s)	29, 240, 241
AgsI	TTSAA	1 cut(s)	17
AluBI	AGCT	2 cut(s)	82, 180
AluI	AGCT	2 cut(s)	82, 180
AoxI	GGCC	1 cut(s)	20
ApeKI	GCWGC	1 cut(s)	275
ApoI	RAATTY	2 cut(s)	287, 320
AseI	ATTAAT	2 cut(s)	225, 443
AspS9I	GGNCC	1 cut(s)	146
AvaII	GGWCC	1 cut(s)	146
BbsI	GAAGAC	1 cut(s)	142
BbvI	GCAGC	1 cut(s)	287
BccI	CCATC	1 cut(s)	119
BfaI	CTAG	1 cut(s)	408
BisI	GCNGC	2 cut(s)	50, 276
BlsI	GCNGC	2 cut(s)	51, 277
Bme18I	GGWCC	1 cut(s)	146
BmgT120I	GGNCC	1 cut(s)	146
BmiI	GGNNCC	1 cut(s)	194
BpiI	GAAGAC	1 cut(s)	142
BpuEI	CTTGAG	1 cut(s)	357
BsaJI	CCNNGG	1 cut(s)	239
Bsc4I	CCNNNNNNNGG	3 cut(s)	29, 240, 241
BseDI	CCNNGG	1 cut(s)	239
BseLI	CCNNNNNNNGG	3 cut(s)	29, 240, 241
BseXI	GCAGC	1 cut(s)	287
BshFI	GGCC	1 cut(s)	22
BslFI	GGGAC	1 cut(s)	217
BslI	CCNNNNNNNGG	3 cut(s)	29, 240, 241
BsmFI	GGGAC	1 cut(s)	217
BsmI	GAATGC	1 cut(s)	70
BsnI	GGCC	1 cut(s)	22
Bsp143I	GATC	1 cut(s)	298
BspACI	CCGC	1 cut(s)	49
BspANI	GGCC	1 cut(s)	22
BspLI	GGNNCC	1 cut(s)	194
BspQI	GCTCTTC	1 cut(s)	39
BsrBI	CCGCTC	1 cut(s)	49
BssECI	CCNNGG	1 cut(s)	239
BssMI	GATC	1 cut(s)	298
BssT1I	CCWWGG	1 cut(s)	239
Bst4CI	ACNGT	1 cut(s)	331
Bst6I	CTCTTC	2 cut(s)	39, 408
BstDEI	CTNAG	1 cut(s)	75
BstENI	CCTNNNNNAGG	1 cut(s)	27
BstKTI	GATC	1 cut(s)	301
BstMBI	GATC	1 cut(s)	298
BstV1I	GCAGC	1 cut(s)	287
BstV2I	GAAGAC	1 cut(s)	142
BsuRI	GGCC	1 cut(s)	22
Cfr13I	GGNCC	1 cut(s)	146
Csp6I	GTAC	1 cut(s)	396
CviJI	RGCY	4 cut(s)	22, 82, 180, 355
CviKI_1	RGCY	4 cut(s)	22, 82, 180, 355
CviQI	GTAC	1 cut(s)	396
DdeI	CTNAG	1 cut(s)	75
DpnI	GATC	1 cut(s)	300
DpnII	GATC	1 cut(s)	298
DraI	TTTAAA	1 cut(s)	285
DrdI	GACNNNNNNGTC	1 cut(s)	144
DseDI	GACNNNNNNGTC	1 cut(s)	144
Eam1104I	CTCTTC	2 cut(s)	39, 408
EarI	CTCTTC	2 cut(s)	39, 408
Eco130I	CCWWGG	1 cut(s)	239
Eco147I	AGGCCT	1 cut(s)	22
Eco32I	GATATC	1 cut(s)	175
Eco47I	GGWCC	1 cut(s)	146
EcoNI	CCTNNNNNAGG	1 cut(s)	27
EcoRV	GATATC	1 cut(s)	175
EcoT14I	CCWWGG	1 cut(s)	239
ErhI	CCWWGG	1 cut(s)	239
FaiI	YATR	8 cut(s)	129, 151, 153, 230, 255, 272, 297, 394
FalI	AAGNNNNNCTT	2 cut(s)	10, 42
FaqI	GGGAC	1 cut(s)	217
FauNDI	CATATG	1 cut(s)	151
FblI	GTMKAC	1 cut(s)	246
Fnu4HI	GCNGC	2 cut(s)	50, 276
Fsp4HI	GCNGC	2 cut(s)	50, 276
FspBI	CTAG	1 cut(s)	408
GluI	GCNGC	2 cut(s)	50, 276
HaeIII	GGCC	1 cut(s)	22
HincII	GTYRAC	1 cut(s)	247
HindII	GTYRAC	1 cut(s)	247
HinfI	GANTC	1 cut(s)	370
Hpy166II	GTNNAC	2 cut(s)	247, 259
Hpy188I	TCNGA	1 cut(s)	207
Hpy8I	GTNNAC	2 cut(s)	247, 259
HpyCH4III	ACNGT	1 cut(s)	331
HpyCH4V	TGCA	3 cut(s)	70, 155, 200
HpyF3I	CTNAG	1 cut(s)	75
Kzo9I	GATC	1 cut(s)	298
LguI	GCTCTTC	1 cut(s)	39
LpnPI	CCDG	3 cut(s)	129, 369, 407
Lsp1109I	GCAGC	1 cut(s)	287
MaeI	CTAG	1 cut(s)	408
MaeIII	GTNAC	1 cut(s)	417
MalI	GATC	1 cut(s)	300
MbiI	CCGCTC	1 cut(s)	49
MboI	GATC	1 cut(s)	298
MboII	GAAGA	3 cut(s)	56, 147, 425
MfeI	CAATTG	1 cut(s)	65
MluCI	AATT	4 cut(s)	65, 287, 320, 444
MlyI	GAGTC	1 cut(s)	364
MnlI	CCTC	2 cut(s)	213, 245
MseI	TTAA	5 cut(s)	182, 225, 284, 366, 443
MslI	CAYNNNNRTG	1 cut(s)	227
MunI	CAATTG	1 cut(s)	65
Mva1269I	GAATGC	1 cut(s)	70
NdeI	CATATG	1 cut(s)	151
NdeII	GATC	1 cut(s)	298
NlaIV	GGNNCC	1 cut(s)	194
PceI	AGGCCT	1 cut(s)	22
PciSI	GCTCTTC	1 cut(s)	39
PctI	GAATGC	1 cut(s)	70
PkrI	GCNGC	2 cut(s)	51, 277
PleI	GAGTC	1 cut(s)	364
PpsI	GAGTC	1 cut(s)	364
PshBI	ATTAAT	2 cut(s)	225, 443
PspN4I	GGNNCC	1 cut(s)	194
PspPI	GGNCC	1 cut(s)	146
RsaI	GTAC	1 cut(s)	397
RsaNI	GTAC	1 cut(s)	396
RseI	CAYNNNNRTG	1 cut(s)	227
SalI	GTCGAC	1 cut(s)	245
SapI	GCTCTTC	1 cut(s)	39
SaqAI	TTAA	5 cut(s)	182, 225, 284, 366, 443
SatI	GCNGC	2 cut(s)	50, 276
Sau3AI	GATC	1 cut(s)	298
Sau96I	GGNCC	1 cut(s)	146
SchI	GAGTC	1 cut(s)	364
SetI	ASST	7 cut(s)	34, 84, 148, 182, 198, 205, 426
SinI	GGWCC	1 cut(s)	146
SmiMI	CAYNNNNRTG	1 cut(s)	227
SmlI	CTYRAG	1 cut(s)	372
SmoI	CTYRAG	1 cut(s)	372
Sse9I	AATT	4 cut(s)	65, 287, 320, 444
SseBI	AGGCCT	1 cut(s)	22
SsiI	CCGC	1 cut(s)	49
SspI	AATATT	1 cut(s)	13
SspMI	CTAG	1 cut(s)	408
StuI	AGGCCT	1 cut(s)	22
StyI	CCWWGG	1 cut(s)	239
TaaI	ACNGT	1 cut(s)	331
TaqI	TCGA	2 cut(s)	219, 246
TasI	AATT	4 cut(s)	65, 287, 320, 444
TatI	WGTACW	1 cut(s)	395
TauI	GCSGC	1 cut(s)	52
Tru1I	TTAA	5 cut(s)	182, 225, 284, 366, 443
Tru9I	TTAA	5 cut(s)	182, 225, 284, 366, 443
TseI	GCWGC	1 cut(s)	275
TspDTI	ATGAA	1 cut(s)	351
TspGWI	ACGGA	1 cut(s)	281
VpaK11BI	GGWCC	1 cut(s)	146
VspI	ATTAAT	2 cut(s)	225, 443
XagI	CCTNNNNNAGG	1 cut(s)	27
XapI	RAATTY	2 cut(s)	287, 320
XmiI	GTMKAC	1 cut(s)	246
XspI	CTAG	1 cut(s)	408

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.