Prupe.4G272100_v2.0.a1

2-oxoisovalerate dehydrogenase subunit alpha

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp04
Physical Location & Seq
Reverse (-)
22349833 .. 22356032
6200 bp
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UTR
Exon/CDS
Intron
Prupe.4G272100.1

Sequence Viewer

Length: 1431 bp
ATGCATCAATGGATGAGGAAATCAGGGACCATTGTCAACCATTTCAAATCTCTGCTCTTGGTTACCAACAATCTCAGCTCTTGGAGGAGTTACTCGTTTGTTAAAAGATCTCAATTTGCTGCTTCATTTGCTCACAATCTCCCAGTCGCTGATAGAGATTTCATCAATTCATCAACCCATTTCTGCCCCCGTCGCTTTGAATCCGTGAAATCAGAAAAGATAGCGAATAATGTTGATGACAATCAGGCTTTAGAGCTTCCAGAAGGAAAGGTGAAATTCACTCCTAAATTGAGGTTCATATCTGAGACGGCCGATGAGAGGGAATGCTGCTATCGGGTCCTTGATGAAAATGGAAACCGAATTTCATCCAGCAACTATGTAGAGGTCAGTAAAGAAGTCGCTATAAAAATGTACACCGACATGGTTACTCTCCAGACAATGGACACCATTTTCTATGAAGCACAAAGGCAAGGAAGGATTTCCTTCTATGTGACCGCAGCTGGAGAAGAGGCCATCAATATTGCATCTGCTGCCGCACTCAAAATTGACGACATTGTCTTTCCTCAGTACAGGGAGGCCGGAGTGTTATTATGGCGTGGTTTCACCATACAAGAATTTGCAAACCAGTGTTTCAGTAACAAAGCTGATTATGGGAAAGGCCGGCAGATGCCAATCCATTACGGGTCTAACAAGCACAATTATGTCACTGTAGCCTCAACTGTGGCTACACAACTACCGCAAGCTGTTGGTGCTGCGTATTCCTTAAAGATGGAAAAACAAGATGCATGTGCAATTGCGTATGTTGGTGATGGTGGCACTAGCGAGGGCGATTTCCATGCTGCATTGAATTTTGCGGCTGTTACGGAGGCTCCGGTTATATTTTTCTGTCGGAACAATGGATGGGCTATCAGTACACCTACTTCAGACCAGTTTCGGAGTGATGGTGTTGTTGTCAAAGGTCGGGCTTATGGAGTTCGAAGCATCCGAGTAGATGGTAATGATGCACTTGCCGTGTATAGTGCAGTTCATGCAGCACGTGACATGGCTATCAGAGAACAGAGACCAATCTTAATTGAGGCATTAACATATCGAGTGGGACACCATTCCACCTCAGATGATTCGACCAAGTATCGTCCAGTCAAAGAGATTGAATGGTGGAAAATGGAACAAGACCCTGTAACCCGATTTAGAAATTGGATGGAAAACAACAGTTGGTGGAGTGATAAGGCAGAATCAGAGGCTAGAAACAGTGCGAGAAAGCAGATATTACATGCAATCCAAGAAGCAGAGAAAGTTGACAAACCTCCAGTTGCTGACATTTTCACAGATGTATATGATTCTCCCCCTTCCCATCTCTGTGAGCAGGAGAAATTGCTAAGAGAGGCGATTAAAAGACACCCCCAGGATTACCCATCTGATGTTCCTCTCTGA

Protein Analysis

477

Amino Acids

53.9

Weight (kDa)

6.52

Isoelectric Point (pI)

42.48

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 554
AccB7I CCANNNNNTGG 1 cut(s) 439
AciI CCGC 4 cut(s) 495, 534, 737, 854
AcoI YGGCCR 1 cut(s) 309
AcsI RAATTY 4 cut(s) 275, 360, 614, 847
AcuI CTGAAG 1 cut(s) 906
AcvI CACGTG 1 cut(s) 1037
AfaI GTAC 3 cut(s) 413, 569, 913
AfiI CCNNNNNNNGG 2 cut(s) 318, 439
AgsI TTSAA 4 cut(s) 46, 200, 847, 1151
AjnI CCWGG 1 cut(s) 1401
AluBI AGCT 5 cut(s) 78, 256, 500, 644, 743
AluI AGCT 5 cut(s) 78, 256, 500, 644, 743
Alw26I GTCTC 2 cut(s) 299, 1054
AlwNI CAGNNNCTG 2 cut(s) 149, 1313
AoxI GGCC 4 cut(s) 309, 510, 576, 658
ApeKI GCWGC 7 cut(s) 119, 327, 497, 530, 752, 839, 1031
ApoI RAATTY 4 cut(s) 275, 360, 614, 847
Asp700I GAANNNNTTC 1 cut(s) 478
AspS9I GGNCC 2 cut(s) 27, 337
AsuHPI GGTGA 3 cut(s) 283, 595, 818
AsuII TTCGAA 1 cut(s) 976
AvaII GGWCC 2 cut(s) 27, 337
BarI GAAGNNNNNNTAC 2 cut(s) 904, 936
BbrPI CACGTG 1 cut(s) 1037
BbvI GCAGC 7 cut(s) 106, 314, 509, 517, 739, 826, 1043
BccI CCATC 9 cut(s) 521, 763, 803, 894, 935, 986, 1192, 1359, 1420
BceAI ACGGC 2 cut(s) 324, 995
BcgI CGANNNNNNTGC 2 cut(s) 818, 852
BciT130I CCWGG 1 cut(s) 1403
BcoDI GTCTC 2 cut(s) 299, 1054
BfaI CTAG 2 cut(s) 819, 1242
BfmI CTRYAG 1 cut(s) 708
BglII AGATCT 1 cut(s) 107
BisI GCNGC 9 cut(s) 120, 328, 498, 531, 534, 753, 840, 855, 1032
BlsI GCNGC 9 cut(s) 121, 329, 499, 532, 535, 754, 841, 856, 1033
Bme1390I CCNGG 1 cut(s) 1403
Bme18I GGWCC 2 cut(s) 27, 337
BmgT120I GGNCC 2 cut(s) 27, 337
BmiI GGNNCC 3 cut(s) 28, 338, 870
BmrFI CCNGG 1 cut(s) 1403
BmrI ACTGGG 1 cut(s) 137
BmsI GCATC 6 cut(s) 13, 533, 657, 772, 990, 991
BmuI ACTGGG 1 cut(s) 137
BoxI GACNNNNGTC 1 cut(s) 32
BpmI CTGGAG 3 cut(s) 416, 522, 1290
Bpu14I TTCGAA 1 cut(s) 976
BsaAI YACGTR 1 cut(s) 1037
BsaBI GATNNNNATC 2 cut(s) 240, 671
BsaI GGTCTC 1 cut(s) 1054
BsaJI CCNNGG 1 cut(s) 1401
BsaWI WCCGGW 1 cut(s) 871
BsaXI ACNNNNNCTCC 4 cut(s) 853, 883, 928, 958
Bsc4I CCNNNNNNNGG 2 cut(s) 318, 439
Bse118I RCCGGY 1 cut(s) 660
Bse1I ACTGG 5 cut(s) 143, 625, 928, 1136, 1307
Bse8I GATNNNNATC 2 cut(s) 240, 671
BseBI CCWGG 1 cut(s) 1403
BseDI CCNNGG 1 cut(s) 1401
BseGI GGATG 5 cut(s) 18, 365, 905, 981, 1203
BseJI GATNNNNATC 2 cut(s) 240, 671
BseLI CCNNNNNNNGG 2 cut(s) 318, 439
BseMII CTCAG 4 cut(s) 88, 294, 578, 1125
BseNI ACTGG 5 cut(s) 143, 625, 928, 1136, 1307
BseRI GAGGAG 1 cut(s) 100
BseX3I CGGCCG 1 cut(s) 309
BseXI GCAGC 7 cut(s) 106, 314, 509, 517, 739, 826, 1043
BsgI GTGCAG 1 cut(s) 1041
Bsh1285I CGRYCG 1 cut(s) 312
BshFI GGCC 4 cut(s) 311, 512, 578, 660
BsiEI CGRYCG 1 cut(s) 312
BsiSI CCGG 3 cut(s) 579, 661, 872
BslFI GGGAC 2 cut(s) 40, 1110
BslI CCNNNNNNNGG 2 cut(s) 318, 439
BsmAI GTCTC 2 cut(s) 299, 1054
BsmBI CGTCTC 1 cut(s) 299
BsmFI GGGAC 2 cut(s) 40, 1110
BsmI GAATGC 1 cut(s) 329
BsnI GGCC 4 cut(s) 311, 512, 578, 660
Bso31I GGTCTC 1 cut(s) 1054
Bsp119I TTCGAA 1 cut(s) 976
Bsp1407I TGTACA 1 cut(s) 411
Bsp143I GATC 1 cut(s) 107
BspACI CCGC 4 cut(s) 495, 534, 737, 854
BspANI GGCC 4 cut(s) 311, 512, 578, 660
BspCNI CTCAG 4 cut(s) 87, 295, 577, 1124
BspLI GGNNCC 3 cut(s) 28, 338, 870
BspT104I TTCGAA 1 cut(s) 976
BspTNI GGTCTC 1 cut(s) 1054
BsrFI RCCGGY 1 cut(s) 660
BsrGI TGTACA 1 cut(s) 411
BsrI ACTGG 5 cut(s) 143, 625, 928, 1136, 1307
BssAI RCCGGY 1 cut(s) 660
BssECI CCNNGG 1 cut(s) 1401
BssMI GATC 1 cut(s) 107
Bst2UI CCWGG 1 cut(s) 1403
Bst4CI ACNGT 4 cut(s) 709, 721, 1211, 1250
Bst6I CTCTTC 1 cut(s) 501
BstAPI GCANNNNNTGC 2 cut(s) 530, 1028
BstAUI TGTACA 1 cut(s) 411
BstBAI YACGTR 1 cut(s) 1037
BstBI TTCGAA 1 cut(s) 976
BstC8I GCNNGC 2 cut(s) 662, 741
BstDEI CTNAG 5 cut(s) 74, 303, 564, 1111, 1376
BstEII GGTNACC 1 cut(s) 61
BstF5I GGATG 5 cut(s) 18, 365, 905, 981, 1203
BstKTI GATC 1 cut(s) 110
BstMAI GTCTC 2 cut(s) 299, 1054
BstMBI GATC 1 cut(s) 107
BstMCI CGRYCG 1 cut(s) 312
BstMWI GCNNNNNNNGC 5 cut(s) 128, 192, 530, 749, 1028
BstNI CCWGG 1 cut(s) 1403
BstNSI RCATGY 2 cut(s) 789, 1274
BstPAI GACNNNNGTC 1 cut(s) 32
BstPI GGTNACC 1 cut(s) 61
BstSCI CCNGG 1 cut(s) 1401
BstSFI CTRYAG 1 cut(s) 708
BstV1I GCAGC 7 cut(s) 106, 314, 509, 517, 739, 826, 1043
BstX2I RGATCY 1 cut(s) 107
BstYI RGATCY 1 cut(s) 107
BstZI CGGCCG 1 cut(s) 309
BsuRI GGCC 4 cut(s) 311, 512, 578, 660
BtsCI GGATG 5 cut(s) 18, 365, 905, 981, 1203
BtsIMutI CAGTG 3 cut(s) 632, 705, 1255
Cac8I GCNNGC 2 cut(s) 662, 741
CaiI CAGNNNCTG 2 cut(s) 149, 1313
Cfr10I RCCGGY 1 cut(s) 660
Cfr13I GGNCC 2 cut(s) 27, 337
Csp6I GTAC 3 cut(s) 412, 568, 912
CviAII CATG 6 cut(s) 421, 786, 836, 1028, 1042, 1271
CviQI GTAC 3 cut(s) 412, 568, 912
DdeI CTNAG 5 cut(s) 74, 303, 564, 1111, 1376
DpnI GATC 1 cut(s) 109
DpnII GATC 1 cut(s) 107
DrdI GACNNNNNNGTC 1 cut(s) 554
DseDI GACNNNNNNGTC 1 cut(s) 554
EaeI YGGCCR 1 cut(s) 309
EagI CGGCCG 1 cut(s) 309
Eam1104I CTCTTC 1 cut(s) 501
EarI CTCTTC 1 cut(s) 501
EclXI CGGCCG 1 cut(s) 309
Eco31I GGTCTC 1 cut(s) 1054
Eco47I GGWCC 2 cut(s) 27, 337
Eco52I CGGCCG 1 cut(s) 309
Eco57I CTGAAG 1 cut(s) 906
Eco72I CACGTG 1 cut(s) 1037
Eco91I GGTNACC 1 cut(s) 61
EcoO109I RGGNCCY 1 cut(s) 337
EcoO65I GGTNACC 1 cut(s) 61
EcoRII CCWGG 1 cut(s) 1401
EcoT22I ATGCAT 2 cut(s) 6, 787
Esp3I CGTCTC 1 cut(s) 299
FaeI CATG 6 cut(s) 424, 789, 839, 1031, 1045, 1274
FaqI GGGAC 2 cut(s) 40, 1110
FatI CATG 6 cut(s) 420, 785, 835, 1027, 1041, 1270
Fnu4HI GCNGC 9 cut(s) 120, 328, 498, 531, 534, 753, 840, 855, 1032
FokI GGATG 5 cut(s) 25, 352, 912, 968, 1210
Fsp4HI GCNGC 9 cut(s) 120, 328, 498, 531, 534, 753, 840, 855, 1032
FspBI CTAG 2 cut(s) 819, 1242
GluI GCNGC 9 cut(s) 120, 328, 498, 531, 534, 753, 840, 855, 1032
GsuI CTGGAG 3 cut(s) 416, 522, 1290
HaeIII GGCC 4 cut(s) 311, 512, 578, 660
HapII CCGG 3 cut(s) 579, 661, 872
Hin1II CATG 6 cut(s) 424, 789, 839, 1031, 1045, 1274
HincII GTYRAC 2 cut(s) 37, 1297
HindII GTYRAC 2 cut(s) 37, 1297
HinfI GANTC 4 cut(s) 200, 1118, 1232, 1337
HpaII CCGG 3 cut(s) 579, 661, 872
HphI GGTGA 3 cut(s) 283, 595, 818
Hpy166II GTNNAC 4 cut(s) 37, 414, 914, 1297
Hpy188III TCNNGA 2 cut(s) 260, 433
Hpy8I GTNNAC 4 cut(s) 37, 414, 914, 1297
Hpy99I CGWCG 1 cut(s) 195
HpyAV CCTTC 4 cut(s) 257, 468, 493, 1356
HpyCH4III ACNGT 4 cut(s) 709, 721, 1211, 1250
HpyCH4IV ACGT 1 cut(s) 1036
HpyF10VI GCNNNNNNNGC 5 cut(s) 128, 192, 530, 749, 1028
HpyF3I CTNAG 5 cut(s) 74, 303, 564, 1111, 1376
HpySE526I ACGT 1 cut(s) 1036
Hsp92II CATG 6 cut(s) 424, 789, 839, 1031, 1045, 1274
KroI GCCGGC 1 cut(s) 660
KroNI GCCGGC 1 cut(s) 662
Kzo9I GATC 1 cut(s) 107
LmnI GCTCC 1 cut(s) 874
Lsp1109I GCAGC 7 cut(s) 106, 314, 509, 517, 739, 826, 1043
LweI GCATC 6 cut(s) 13, 533, 657, 772, 990, 991
MaeI CTAG 2 cut(s) 819, 1242
MaeII ACGT 1 cut(s) 1036
MaeIII GTNAC 9 cut(s) 61, 89, 424, 490, 635, 703, 859, 1037, 1177
MalI GATC 1 cut(s) 109
MboI GATC 1 cut(s) 107
MboII GAAGA 1 cut(s) 518
MfeI CAATTG 1 cut(s) 792
MflI RGATCY 1 cut(s) 107
MmeI TCCRAC 1 cut(s) 869
Mph1103I ATGCAT 2 cut(s) 6, 787
MroNI GCCGGC 1 cut(s) 660
MroXI GAANNNNTTC 1 cut(s) 478
MseI TTAA 5 cut(s) 102, 764, 1070, 1082, 1389
MslI CAYNNNNRTG 3 cut(s) 419, 699, 1356
MspA1I CMGCKG 1 cut(s) 500
MspI CCGG 3 cut(s) 579, 661, 872
MspR9I CCNGG 1 cut(s) 1403
MunI CAATTG 1 cut(s) 792
Mva1269I GAATGC 1 cut(s) 329
MvaI CCWGG 1 cut(s) 1403
MwoI GCNNNNNNNGC 5 cut(s) 128, 192, 530, 749, 1028
NaeI GCCGGC 1 cut(s) 662
NdeII GATC 1 cut(s) 107
NgoMIV GCCGGC 1 cut(s) 660
NlaIII CATG 6 cut(s) 424, 789, 839, 1031, 1045, 1274
NlaIV GGNNCC 3 cut(s) 28, 338, 870
NmuCI GTSAC 3 cut(s) 490, 703, 1037
NsiI ATGCAT 2 cut(s) 6, 787
NspI RCATGY 2 cut(s) 789, 1274
NspV TTCGAA 1 cut(s) 976
PcsI WCGNNNNNNNCGW 1 cut(s) 982
PctI GAATGC 1 cut(s) 329
PdiI GCCGGC 1 cut(s) 662
PdmI GAANNNNTTC 1 cut(s) 478
PfeI GAWTC 4 cut(s) 200, 1118, 1232, 1337
PflFI GACNNNGTC 1 cut(s) 554
PflMI CCANNNNNTGG 1 cut(s) 439
PkrI GCNGC 9 cut(s) 121, 329, 499, 532, 535, 754, 841, 856, 1033
PmaCI CACGTG 1 cut(s) 1037
PmlI CACGTG 1 cut(s) 1037
Ppu21I YACGTR 1 cut(s) 1037
PpuMI RGGWCCY 1 cut(s) 337
PshAI GACNNNNGTC 1 cut(s) 32
Psp5II RGGWCCY 1 cut(s) 337
Psp6I CCWGG 1 cut(s) 1401
PspCI CACGTG 1 cut(s) 1037
PspEI GGTNACC 1 cut(s) 61
PspGI CCWGG 1 cut(s) 1401
PspN4I GGNNCC 3 cut(s) 28, 338, 870
PspPI GGNCC 2 cut(s) 27, 337
PspPPI RGGWCCY 1 cut(s) 337
PstNI CAGNNNCTG 2 cut(s) 149, 1313
PsuI RGATCY 1 cut(s) 107
PsyI GACNNNGTC 1 cut(s) 554
PvuII CAGCTG 1 cut(s) 500
RsaI GTAC 3 cut(s) 413, 569, 913
RsaNI GTAC 3 cut(s) 412, 568, 912
RseI CAYNNNNRTG 3 cut(s) 419, 699, 1356
SaqAI TTAA 5 cut(s) 102, 764, 1070, 1082, 1389
SatI GCNGC 9 cut(s) 120, 328, 498, 531, 534, 753, 840, 855, 1032
Sau3AI GATC 1 cut(s) 107
Sau96I GGNCC 2 cut(s) 27, 337
ScrFI CCNGG 1 cut(s) 1403
SfaNI GCATC 6 cut(s) 13, 533, 657, 772, 990, 991
SfcI CTRYAG 1 cut(s) 708
SfuI TTCGAA 1 cut(s) 976
SinI GGWCC 2 cut(s) 27, 337
SmiMI CAYNNNNRTG 3 cut(s) 419, 699, 1356
SsiI CCGC 4 cut(s) 495, 534, 737, 854
SspI AATATT 1 cut(s) 520
SspMI CTAG 2 cut(s) 819, 1242
StyD4I CCNGG 1 cut(s) 1401
TaaI ACNGT 4 cut(s) 709, 721, 1211, 1250
TaiI ACGT 1 cut(s) 1039
TaqI TCGA 3 cut(s) 976, 1090, 1121
TatI WGTACW 3 cut(s) 411, 567, 911
TauI GCSGC 2 cut(s) 536, 857
TfiI GAWTC 4 cut(s) 200, 1118, 1232, 1337
Tru1I TTAA 5 cut(s) 102, 764, 1070, 1082, 1389
Tru9I TTAA 5 cut(s) 102, 764, 1070, 1082, 1389
TscAI CASTG 3 cut(s) 632, 712, 1255
TseFI GTSAC 3 cut(s) 490, 703, 1037
TseI GCWGC 7 cut(s) 119, 327, 497, 530, 752, 839, 1031
Tsp45I GTSAC 3 cut(s) 490, 703, 1037
TspDTI ATGAA 8 cut(s) 114, 151, 159, 286, 354, 360, 471, 1016
TspGWI ACGGA 2 cut(s) 193, 878
TspRI CASTG 3 cut(s) 632, 712, 1255
Tth111I GACNNNGTC 1 cut(s) 554
Van91I CCANNNNNTGG 1 cut(s) 439
VpaK11BI GGWCC 2 cut(s) 27, 337
XapI RAATTY 4 cut(s) 275, 360, 614, 847
XceI RCATGY 2 cut(s) 789, 1274
XmnI GAANNNNTTC 1 cut(s) 478
XspI CTAG 2 cut(s) 819, 1242
Zsp2I ATGCAT 2 cut(s) 6, 787
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.