Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000315.1

Orthogroup ID

OG0001226

Physical Location & Seq

Genomic Coordinates Forward (+)

20402 .. 23100

Gene Structure 2699 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000315.1_g000007.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1197 bp

atgttttggcaggttttggatttaccagatgggaaggtcaaatttactcctgaaatgaggttcatatctgagtcgactacggagcgtgagtcctgttatcgggtccttgatgacaatgggaagaaaattatgtccagcaactatgctgaggtcagccgggaagttgctgtaaaaatgtacacagacatggtgatgcttcaaactatggacaccattttctatgaagcacagaggcaaggaagaatttccttttatctgactacagttggtgaagaagccatcaatattgcatctgctgcagcactcacctttgatgacattgtccttcctcagtacagggagccaggagttttaatatggcgtggtttcactgcacaagaatttgcaaaccagtgtttcagtaacaaagctgattatgggaaaggcagacagatgccaatccattatgggtctaacaagcacaattacatcactgtatcatcacccatagctacacaacttccacaggctgttggtgttgcttattctctaaaaatggacagaaaagatgcatgtgtggtcacatatattggggaaggtggcacaagtgagggtgatttccattctgctctaaattttgcggctgttacggaggctccagtcgtattcatttgtcggaacaacggatgggctatcagtacacctacttcagaccagtttcggagtgatggtgttgttgtaaaaggtcgggcttatggaatccgaagtatccgagtagatgggaatgatgcacttgccatgtatagtgcagtttacgctgcacgcgaaatggcaatcagtgaacagagaccaatcttaatagaggcattaacatatcgagttggacaccattccacatcagatgattcaaccaagtatcggccagttgatgagattgaacggtggaaagtggaacgagacccagtaactagatttagaaaatggattgaaagaaatggttggtggagtggtgaggcagagatagaggctagaaacagtgtgagaaagcagatgttacatgcaatccaggaagctgagaaagttgaaaagccaccagttgctgacatgttcactgatgtatacgactgtcctccttccaatcttgttgagcaggagaaacggctaagagagacaattaagagacacccccaggattacccatctgatgttcctgtgtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003826 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005759 GO:0006082 GO:0006520 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009063 GO:0009081 GO:0009083 GO:0009987 GO:0016054 GO:0016491 GO:0017086 GO:0019752 GO:0031974 GO:0032991 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043436 GO:0044237 GO:0044238 GO:0044248 GO:0044281 GO:0044282 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0046395 GO:0055114 GO:0070013 GO:0071704 GO:0098798 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko00280 ko00640 ko01100 ko01110 ko01130 map00280 map00640 map01100 map01110 map01130

Pfam Domains

Protein Families

E1_dh

Protein Analysis

398

Amino Acids

45.23

Weight (kDa)

5.66

Isoelectric Point (pI)

48.62

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001226)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G21400 AT1G21400 AT1G21400 AT1G21400 AT1G21400 AT1G21400 AT5G09300 AT5G09300 AT5G09300 AT5G09300
fragaria_vesca	FvH4_1g24490 FvH4_1g24490 FvH4_1g24490 FvH4_1g24490 FvH4_1g24490 FvH4_1g24490 FvH4_1g24490 FvH4_1g24490 FvH4_1g24490
malus_domestica	MD01G1005600.v1.1 MD15G1133900.v1.1
prunus_persica	Prupe.4G272100_v2.0.a1
pyrus_communis	pycom01g01240 pycom15g12070
rosa_chinensis	RchiOBHm_Chr2g0121681 RchiOBHm_Chr2g0121691 RchiOBHm_Chr2g0121741 RchiOBHm_Chr2g0121751
rosa_laevigata	RLG00000018629 RLG00000018630
rosa_multiflora	Rmu_co8210604.1_g000001 Rmu_co8500107.1_g000001 Rmu_sc0000315.1_g000007 Rmu_sc0002194.1_g000001 Rmu_sc0002194.1_g000003
rosa_roxburghii	Rroxscaffold_2G00122230 Rroxscaffold_2G00122280 Rroxscaffold_2G00122300 Rroxscaffold_2G00122320
rosa_rugosa	Rorug02G0234000 Rorug02G0234100
rosa_samantha	Rh2AG290900 Rh2AG291100 Rh2AG291300 Rh2AG291400 Rh2BG301700 Rh2BG301900 Rh2CG280500 Rh2CG280700 Rh2DG315500 Rh2DG315600 Rh2DG315800 Rh2DG315900
rosa_wichuraiana	Rw2G023330 Rw2G023350 Rw2G023360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	2 cut(s)	74, 1098
AccII	CGCG	1 cut(s)	804
AciI	CCGC	1 cut(s)	620
AcoI	YGGCCR	1 cut(s)	899
AcsI	RAATTY	4 cut(s)	41, 243, 380, 613
AcuI	CTGAAG	1 cut(s)	672
AfaI	GTAC	3 cut(s)	179, 335, 679
AfiI	CCNNNNNNNGG	2 cut(s)	99, 897
AflIII	ACRYGT	1 cut(s)	1083
AgsI	TTSAA	5 cut(s)	200, 888, 917, 968, 1064
AjnI	CCWGG	3 cut(s)	343, 1044, 1167
AluBI	AGCT	3 cut(s)	410, 491, 1052
AluI	AGCT	3 cut(s)	410, 491, 1052
Alw26I	GTCTC	4 cut(s)	820, 930, 1142, 1153
AlwNI	CAGNNNCTG	1 cut(s)	1079
AoxI	GGCC	1 cut(s)	899
ApeKI	GCWGC	3 cut(s)	296, 299, 797
ApoI	RAATTY	4 cut(s)	41, 243, 380, 613
Asp700I	GAANNNNTTC	1 cut(s)	244
AspS9I	GGNCC	1 cut(s)	103
AsuC2I	CCSGG	1 cut(s)	158
AsuHPI	GGTGA	6 cut(s)	202, 281, 298, 474, 605, 1001
AvaII	GGWCC	1 cut(s)	103
BarI	GAAGNNNNNNTAC	2 cut(s)	670, 702
BbvCI	CCTCAGC	1 cut(s)	147
BbvI	GCAGC	3 cut(s)	283, 311, 784
BccI	CCATC	6 cut(s)	23, 287, 660, 701, 752, 1186
BceAI	ACGGC	1 cut(s)	1154
BciT130I	CCWGG	3 cut(s)	345, 1046, 1169
BciVI	GTATCC	1 cut(s)	758
BcnI	CCSGG	1 cut(s)	158
BcoDI	GTCTC	4 cut(s)	820, 930, 1142, 1153
BfaI	CTAG	2 cut(s)	948, 1008
BfmI	CTRYAG	2 cut(s)	261, 297
BfuI	GTATCC	1 cut(s)	758
BisI	GCNGC	4 cut(s)	297, 300, 621, 798
BlsI	GCNGC	4 cut(s)	298, 301, 622, 799
Bme1390I	CCNGG	4 cut(s)	158, 345, 1046, 1169
Bme18I	GGWCC	1 cut(s)	103
BmgT120I	GGNCC	1 cut(s)	103
BmiI	GGNNCC	3 cut(s)	104, 342, 636
BmrFI	CCNGG	4 cut(s)	158, 345, 1046, 1169
BmrI	ACTGGG	1 cut(s)	935
BmsI	GCATC	5 cut(s)	183, 299, 423, 538, 757
BmuI	ACTGGG	1 cut(s)	935
BpmI	CTGGAG	1 cut(s)	621
Bpu10I	CCTNAGC	1 cut(s)	147
BpuMI	CCSGG	1 cut(s)	158
BsaBI	GATNNNNATC	1 cut(s)	437
BsaI	GGTCTC	2 cut(s)	820, 930
BsaJI	CCNNGG	1 cut(s)	1167
BsaXI	ACNNNNNCTCC	6 cut(s)	74, 104, 619, 649, 694, 724
Bsc4I	CCNNNNNNNGG	2 cut(s)	99, 897
Bse1I	ACTGG	6 cut(s)	391, 638, 694, 902, 941, 1073
Bse8I	GATNNNNATC	1 cut(s)	437
BseBI	CCWGG	3 cut(s)	345, 1046, 1169
BseDI	CCNNGG	1 cut(s)	1167
BseGI	GGATG	1 cut(s)	671
BseJI	GATNNNNATC	1 cut(s)	437
BseLI	CCNNNNNNNGG	2 cut(s)	99, 897
BseMII	CTCAG	4 cut(s)	60, 138, 344, 1044
BseNI	ACTGG	6 cut(s)	391, 638, 694, 902, 941, 1073
BseXI	GCAGC	3 cut(s)	283, 311, 784
BsgI	GTGCAG	3 cut(s)	357, 783, 807
Bsh1236I	CGCG	1 cut(s)	804
BshFI	GGCC	1 cut(s)	901
BsiSI	CCGG	1 cut(s)	157
BslI	CCNNNNNNNGG	2 cut(s)	99, 897
BsmAI	GTCTC	4 cut(s)	820, 930, 1142, 1153
BsnI	GGCC	1 cut(s)	901
Bso31I	GGTCTC	2 cut(s)	820, 930
Bsp1407I	TGTACA	1 cut(s)	177
BspACI	CCGC	1 cut(s)	620
BspANI	GGCC	1 cut(s)	901
BspCNI	CTCAG	4 cut(s)	61, 139, 343, 1045
BspFNI	CGCG	1 cut(s)	804
BspLI	GGNNCC	3 cut(s)	104, 342, 636
BspMAI	CTGCAG	1 cut(s)	301
BspTNI	GGTCTC	2 cut(s)	820, 930
BsrGI	TGTACA	1 cut(s)	177
BsrI	ACTGG	6 cut(s)	391, 638, 694, 902, 941, 1073
BssECI	CCNNGG	1 cut(s)	1167
BssNAI	GTATAC	1 cut(s)	1099
Bst1107I	GTATAC	1 cut(s)	1099
Bst2UI	CCWGG	3 cut(s)	345, 1046, 1169
Bst4CI	ACNGT	5 cut(s)	265, 475, 921, 1016, 1106
BstAPI	GCANNNNNTGC	1 cut(s)	296
BstAUI	TGTACA	1 cut(s)	177
BstC8I	GCNNGC	1 cut(s)	802
BstDEI	CTNAG	5 cut(s)	69, 147, 330, 1053, 1142
BstF5I	GGATG	1 cut(s)	671
BstFNI	CGCG	1 cut(s)	804
BstMAI	GTCTC	4 cut(s)	820, 930, 1142, 1153
BstMWI	GCNNNNNNNGC	2 cut(s)	296, 794
BstNI	CCWGG	3 cut(s)	345, 1046, 1169
BstNSI	RCATGY	3 cut(s)	555, 1040, 1087
BstSCI	CCNGG	4 cut(s)	156, 343, 1044, 1167
BstSFI	CTRYAG	2 cut(s)	261, 297
BstUI	CGCG	1 cut(s)	804
BstV1I	GCAGC	3 cut(s)	283, 311, 784
BstZ17I	GTATAC	1 cut(s)	1099
BsuI	GTATCC	1 cut(s)	758
BsuRI	GGCC	1 cut(s)	901
BtsCI	GGATG	1 cut(s)	671
BtsI	GCAGTG	1 cut(s)	369
BtsIMutI	CAGTG	6 cut(s)	369, 398, 471, 823, 1021, 1089
Cac8I	GCNNGC	1 cut(s)	802
CaiI	CAGNNNCTG	1 cut(s)	1079
Cfr13I	GGNCC	1 cut(s)	103
Csp6I	GTAC	3 cut(s)	178, 334, 678
CviAII	CATG	5 cut(s)	187, 552, 778, 1037, 1084
CviQI	GTAC	3 cut(s)	178, 334, 678
DdeI	CTNAG	5 cut(s)	69, 147, 330, 1053, 1142
EaeI	YGGCCR	1 cut(s)	899
Eco31I	GGTCTC	2 cut(s)	820, 930
Eco47I	GGWCC	1 cut(s)	103
Eco57I	CTGAAG	1 cut(s)	672
EcoO109I	RGGNCCY	1 cut(s)	103
EcoRII	CCWGG	3 cut(s)	343, 1044, 1167
EcoT22I	ATGCAT	1 cut(s)	553
FaeI	CATG	5 cut(s)	190, 555, 781, 1040, 1087
FatI	CATG	5 cut(s)	186, 551, 777, 1036, 1083
FblI	GTMKAC	2 cut(s)	74, 1098
Fnu4HI	GCNGC	4 cut(s)	297, 300, 621, 798
FokI	GGATG	1 cut(s)	678
Fsp4HI	GCNGC	4 cut(s)	297, 300, 621, 798
FspBI	CTAG	2 cut(s)	948, 1008
GluI	GCNGC	4 cut(s)	297, 300, 621, 798
GsuI	CTGGAG	1 cut(s)	621
HaeIII	GGCC	1 cut(s)	901
HapII	CCGG	1 cut(s)	157
Hin1II	CATG	5 cut(s)	190, 555, 781, 1040, 1087
HincII	GTYRAC	1 cut(s)	75
HindII	GTYRAC	1 cut(s)	75
HinfI	GANTC	4 cut(s)	71, 89, 738, 884
HpaII	CCGG	1 cut(s)	157
HphI	GGTGA	6 cut(s)	202, 281, 298, 474, 605, 1001
Hpy166II	GTNNAC	7 cut(s)	75, 180, 680, 793, 821, 1089, 1099
Hpy188I	TCNGA	9 cut(s)	70, 258, 657, 691, 702, 743, 752, 880, 1183
Hpy188III	TCNNGA	1 cut(s)	50
Hpy8I	GTNNAC	7 cut(s)	75, 180, 680, 793, 821, 1089, 1099
HpyAV	CCTTC	4 cut(s)	28, 335, 569, 1122
HpyCH4III	ACNGT	5 cut(s)	265, 475, 921, 1016, 1106
HpyCH4V	TGCA	9 cut(s)	290, 299, 374, 386, 551, 770, 788, 800, 1040
HpyF10VI	GCNNNNNNNGC	2 cut(s)	296, 794
HpyF3I	CTNAG	5 cut(s)	69, 147, 330, 1053, 1142
Hsp92II	CATG	5 cut(s)	190, 555, 781, 1040, 1087
LmnI	GCTCC	3 cut(s)	82, 340, 640
Lsp1109I	GCAGC	3 cut(s)	283, 311, 784
LweI	GCATC	5 cut(s)	183, 299, 423, 538, 757
MaeI	CTAG	2 cut(s)	948, 1008
MaeIII	GTNAC	5 cut(s)	401, 559, 625, 943, 1032
MboII	GAAGA	3 cut(s)	133, 252, 284
MluCI	AATT	7 cut(s)	41, 126, 243, 380, 463, 613, 1152
MlyI	GAGTC	2 cut(s)	80, 98
MmeI	TCCRAC	2 cut(s)	635, 841
Mph1103I	ATGCAT	1 cut(s)	553
MroXI	GAANNNNTTC	1 cut(s)	244
MseI	TTAA	4 cut(s)	353, 836, 848, 1155
MslI	CAYNNNNRTG	2 cut(s)	185, 191
MspI	CCGG	1 cut(s)	157
MspR9I	CCNGG	4 cut(s)	158, 345, 1046, 1169
MvaI	CCWGG	3 cut(s)	345, 1046, 1169
MvnI	CGCG	1 cut(s)	804
MwoI	GCNNNNNNNGC	2 cut(s)	296, 794
NciI	CCSGG	1 cut(s)	158
NlaIII	CATG	5 cut(s)	190, 555, 781, 1040, 1087
NlaIV	GGNNCC	3 cut(s)	104, 342, 636
NmuCI	GTSAC	1 cut(s)	559
NsiI	ATGCAT	1 cut(s)	553
NspI	RCATGY	3 cut(s)	555, 1040, 1087
PciI	ACATGT	1 cut(s)	1083
PcsI	WCGNNNNNNNCGW	1 cut(s)	801
PdmI	GAANNNNTTC	1 cut(s)	244
PfeI	GAWTC	2 cut(s)	738, 884
PflFI	GACNNNGTC	1 cut(s)	320
PfoI	TCCNGGA	1 cut(s)	1044
PkrI	GCNGC	4 cut(s)	298, 301, 622, 799
PleI	GAGTC	2 cut(s)	79, 97
PpsI	GAGTC	2 cut(s)	79, 97
PpuMI	RGGWCCY	1 cut(s)	103
PscI	ACATGT	1 cut(s)	1083
Psp5II	RGGWCCY	1 cut(s)	103
Psp6I	CCWGG	3 cut(s)	343, 1044, 1167
PspGI	CCWGG	3 cut(s)	343, 1044, 1167
PspN4I	GGNNCC	3 cut(s)	104, 342, 636
PspPI	GGNCC	1 cut(s)	103
PspPPI	RGGWCCY	1 cut(s)	103
PstI	CTGCAG	1 cut(s)	301
PstNI	CAGNNNCTG	1 cut(s)	1079
PsyI	GACNNNGTC	1 cut(s)	320
RsaI	GTAC	3 cut(s)	179, 335, 679
RsaNI	GTAC	3 cut(s)	178, 334, 678
RseI	CAYNNNNRTG	2 cut(s)	185, 191
SalI	GTCGAC	1 cut(s)	73
SaqAI	TTAA	4 cut(s)	353, 836, 848, 1155
SatI	GCNGC	4 cut(s)	297, 300, 621, 798
Sau96I	GGNCC	1 cut(s)	103
SchI	GAGTC	2 cut(s)	80, 98
ScrFI	CCNGG	4 cut(s)	158, 345, 1046, 1169
SfaNI	GCATC	5 cut(s)	183, 299, 423, 538, 757
SfcI	CTRYAG	2 cut(s)	261, 297
SinI	GGWCC	1 cut(s)	103
SmiMI	CAYNNNNRTG	2 cut(s)	185, 191
Sse9I	AATT	7 cut(s)	41, 126, 243, 380, 463, 613, 1152
SsiI	CCGC	1 cut(s)	620
SspI	AATATT	1 cut(s)	286
SspMI	CTAG	2 cut(s)	948, 1008
StyD4I	CCNGG	4 cut(s)	156, 343, 1044, 1167
TaaI	ACNGT	5 cut(s)	265, 475, 921, 1016, 1106
TaqI	TCGA	2 cut(s)	74, 856
TasI	AATT	7 cut(s)	41, 126, 243, 380, 463, 613, 1152
TatI	WGTACW	3 cut(s)	177, 333, 677
TauI	GCSGC	1 cut(s)	623
TfiI	GAWTC	2 cut(s)	738, 884
Tru1I	TTAA	4 cut(s)	353, 836, 848, 1155
Tru9I	TTAA	4 cut(s)	353, 836, 848, 1155
TscAI	CASTG	6 cut(s)	376, 398, 478, 823, 1021, 1096
TseFI	GTSAC	1 cut(s)	559
TseI	GCWGC	3 cut(s)	296, 299, 797
Tsp45I	GTSAC	1 cut(s)	559
TspDTI	ATGAA	3 cut(s)	52, 237, 637
TspGWI	ACGGA	3 cut(s)	95, 644, 678
TspRI	CASTG	6 cut(s)	376, 398, 478, 823, 1021, 1096
Tth111I	GACNNNGTC	1 cut(s)	320
VpaK11BI	GGWCC	1 cut(s)	103
XapI	RAATTY	4 cut(s)	41, 243, 380, 613
XceI	RCATGY	3 cut(s)	555, 1040, 1087
XmiI	GTMKAC	2 cut(s)	74, 1098
XmnI	GAANNNNTTC	1 cut(s)	244
XspI	CTAG	2 cut(s)	948, 1008
Zsp2I	ATGCAT	1 cut(s)	553

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.