Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0001226

Physical Location & Seq

Genomic Coordinates Reverse (-)

8222222 .. 8225186

Gene Structure 2965 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom15g12070.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1410 bp

ATGATGAGGAAATCAGGTAGCACCATTATCAAGCATTTCAAATCATCATCGGTCGGTCGCACCTCTTGGACTCCAAAATCTCCACTTCCACTTACTCCCTCATTTCCTCAAATTTTCCGAATCCCGGCAGCCGGAGATCTCAGTAACTTCTGCTCTCGCCGTTTTGAATCCGTCAATGCAGAAAAGATGCCGGATTCGGATACGACTGATCGCAATCACAATCAGGCTTTAGTGTTTCCCGAAGGAAAGGTCAAGTTCACTCCTGAAATGAGTTTCATATCCGAGACTGCTGAGGAGCGGGAATGCTGTTATCGCGTCCTTGACGACAATGGGAGCCAAATTTTGTCCAGCAACTATGTAGAGGTCAGTAAGGAAGTTGCTGTGAAAATGTATACCAACATGGTTACTCTTCAGACCATGGACACCATTTTCTATGAAGCACAAAGGCAAGGAAGGATTTCGTTCTATTTGACCACAGTTGGTGAAGAGGCCACCAATATTGCATCTGCGGCAGCACTCACCATTGACGACATTGTCTTTCCTCAGTACAGGGAGGCAGGAGTGCTATTGTGGCGCGGTTTCACTCTACAAGAATTTGCAAACCAGTGTTTCAGTAACAAAGCTGATTATGGGAAAGGCAGGCAGATGCCGATCCATTATGGATCTAACAAGCTCAATTATGTAACTATAGCATCAACCGTGGCCACACAACTTCCACAGGCTGTTGGTGCTGCATATTCTTTAAAGATGGACACGAAAGATGCATGTGTGGTCGCGTATGTTGGTGATGGTGGCACAAGTGAGGGTGATTTCCATGCTGCTTTGAATTTTGCGGCTGTTAAGGAGGCTCCGGTTATATTCTTTTGTCGGAACAATGGATGGGCTATCAGTACACCTACATCAGACCAGTTTCGGAGTGATGGCGTTGTTGTCAAAGGCCGGGCTTATGGAATTCGAAGCATCCGAGTAGATGGTAATGATGCACTTGCTGTGTACGGTGCAGTTCATGCTGCCCGTGACATGGCAATCAGAGAACAGAGACCAATCTTAATTGAGGCATTAACATATCGAGTAGGACACCATTCCACTTCAGATGATTCGACGAAGTACCGTCCAGTCGAAGAGATTGAATGGTGGAAAATGGAACGAGACCCTGTATCTCGATTTAGAAAGTGGATGGAAAACAATAGTTGGTGGAGTGATAAGCAAGAGTTAGAGGCCAGAAACAGTGCGAGAAAGCAGATATTACATGCAATCCAAGAAGCAGAAAAAGTTGACAAACCTCCAATTGCTGACATTTTCACAGATGTATATGACTCTCCCTCTTCCGATCTCCGCGAGCAGGAGAAATTGCTCAGAGACACAATTCAAAGACACCCCCGCGATTACCCGTCCGACTTTCCTCTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003826 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005759 GO:0006082 GO:0006520 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009063 GO:0009081 GO:0009083 GO:0009987 GO:0016054 GO:0016491 GO:0017086 GO:0019752 GO:0031974 GO:0032991 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043436 GO:0044237 GO:0044238 GO:0044248 GO:0044281 GO:0044282 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0046395 GO:0055114 GO:0070013 GO:0071704 GO:0098798 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko00280 ko00640 ko01100 ko01110 ko01130 map00280 map00640 map01100 map01110 map01130

Pfam Domains

Protein Families

E1_dh

Protein Analysis

470

Amino Acids

52.94

Weight (kDa)

6.06

Isoelectric Point (pI)

42.04

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001226)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G21400 AT1G21400 AT1G21400 AT1G21400 AT1G21400 AT1G21400 AT5G09300 AT5G09300 AT5G09300 AT5G09300
fragaria_vesca	FvH4_1g24490 FvH4_1g24490 FvH4_1g24490 FvH4_1g24490 FvH4_1g24490 FvH4_1g24490 FvH4_1g24490 FvH4_1g24490 FvH4_1g24490
malus_domestica	MD01G1005600.v1.1 MD15G1133900.v1.1
prunus_persica	Prupe.4G272100_v2.0.a1
pyrus_communis	pycom01g01240 pycom15g12070
rosa_chinensis	RchiOBHm_Chr2g0121681 RchiOBHm_Chr2g0121691 RchiOBHm_Chr2g0121741 RchiOBHm_Chr2g0121751
rosa_laevigata	RLG00000018629 RLG00000018630
rosa_multiflora	Rmu_co8210604.1_g000001 Rmu_co8500107.1_g000001 Rmu_sc0000315.1_g000007 Rmu_sc0002194.1_g000001 Rmu_sc0002194.1_g000003
rosa_roxburghii	Rroxscaffold_2G00122230 Rroxscaffold_2G00122280 Rroxscaffold_2G00122300 Rroxscaffold_2G00122320
rosa_rugosa	Rorug02G0234000 Rorug02G0234100
rosa_samantha	Rh2AG290900 Rh2AG291100 Rh2AG291300 Rh2AG291400 Rh2BG301700 Rh2BG301900 Rh2CG280500 Rh2CG280700 Rh2DG315500 Rh2DG315600 Rh2DG315800 Rh2DG315900
rosa_wichuraiana	Rw2G023330 Rw2G023350 Rw2G023360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	533
AccBSI	CCGCTC	1 cut(s)	298
AccI	GTMKAC	1 cut(s)	392
AccII	CGCG	5 cut(s)	315, 576, 776, 1338, 1383
AciI	CCGC	6 cut(s)	298, 509, 576, 833, 1336, 1381
AclWI	GGATC	2 cut(s)	646, 670
AcoI	YGGCCR	1 cut(s)	702
AcsI	RAATTY	5 cut(s)	111, 339, 593, 826, 951
AcuI	CTGAAG	2 cut(s)	395, 1074
AfaI	GTAC	4 cut(s)	548, 892, 995, 1109
AfiI	CCNNNNNNNGG	4 cut(s)	124, 131, 1021, 1342
AgsI	TTSAA	5 cut(s)	40, 167, 826, 1130, 1370
AluBI	AGCT	2 cut(s)	623, 673
AluI	AGCT	2 cut(s)	623, 673
Alw26I	GTCTC	4 cut(s)	278, 1033, 1143, 1353
AlwI	GGATC	2 cut(s)	646, 670
AoxI	GGCC	4 cut(s)	489, 702, 937, 1218
ApeKI	GCWGC	5 cut(s)	128, 512, 731, 818, 1010
ApoI	RAATTY	5 cut(s)	111, 339, 593, 826, 951
ArsI	GACNNNNNNTTYG	2 cut(s)	234, 266
Asp700I	GAANNNNTTC	1 cut(s)	457
AspLEI	GCGC	1 cut(s)	576
AsuC2I	CCSGG	2 cut(s)	125, 941
AsuHPI	GGTGA	4 cut(s)	494, 511, 797, 818
AsuII	TTCGAA	1 cut(s)	955
BalI	TGGCCA	1 cut(s)	704
BbvCI	CCTCAGC	1 cut(s)	291
BbvI	GCAGC	5 cut(s)	140, 524, 718, 805, 997
BccI	CCATC	6 cut(s)	742, 782, 873, 914, 965, 1171
BceAI	ACGGC	1 cut(s)	144
BciVI	GTATCC	1 cut(s)	193
BcnI	CCSGG	2 cut(s)	125, 941
BcoDI	GTCTC	4 cut(s)	278, 1033, 1143, 1353
BfmI	CTRYAG	1 cut(s)	687
BfuI	GTATCC	1 cut(s)	193
BglII	AGATCT	1 cut(s)	136
BisI	GCNGC	7 cut(s)	129, 510, 513, 732, 819, 834, 1011
BlsI	GCNGC	7 cut(s)	130, 511, 514, 733, 820, 835, 1012
Bme1390I	CCNGG	2 cut(s)	125, 941
BmiI	GGNNCC	2 cut(s)	335, 849
BmrFI	CCNGG	2 cut(s)	125, 941
BmsI	GCATC	7 cut(s)	177, 512, 636, 701, 751, 969, 970
Bpu10I	CCTNAGC	1 cut(s)	291
Bpu14I	TTCGAA	1 cut(s)	955
BpuMI	CCSGG	2 cut(s)	125, 941
BsaBI	GATNNNNATC	2 cut(s)	213, 650
BsaI	GGTCTC	2 cut(s)	1033, 1143
BsaJI	CCNNGG	2 cut(s)	417, 699
BsaWI	WCCGGW	1 cut(s)	850
Bsc4I	CCNNNNNNNGG	4 cut(s)	124, 131, 1021, 1342
Bse1I	ACTGG	3 cut(s)	604, 907, 1115
Bse8I	GATNNNNATC	2 cut(s)	213, 650
BseDI	CCNNGG	2 cut(s)	417, 699
BseGI	GGATG	3 cut(s)	884, 960, 1182
BseJI	GATNNNNATC	2 cut(s)	213, 650
BseLI	CCNNNNNNNGG	4 cut(s)	124, 131, 1021, 1342
BseMII	CTCAG	4 cut(s)	154, 282, 557, 1369
BseNI	ACTGG	3 cut(s)	604, 907, 1115
BseRI	GAGGAG	1 cut(s)	308
BseXI	GCAGC	5 cut(s)	140, 524, 718, 805, 997
BsgI	GTGCAG	1 cut(s)	1020
Bsh1236I	CGCG	5 cut(s)	315, 576, 776, 1338, 1383
Bsh1285I	CGRYCG	2 cut(s)	54, 58
BshFI	GGCC	4 cut(s)	491, 704, 939, 1220
BsiEI	CGRYCG	2 cut(s)	54, 58
BsiSI	CCGG	5 cut(s)	125, 132, 191, 851, 940
BslI	CCNNNNNNNGG	4 cut(s)	124, 131, 1021, 1342
BsmAI	GTCTC	4 cut(s)	278, 1033, 1143, 1353
BsmI	GAATGC	1 cut(s)	308
BsnI	GGCC	4 cut(s)	491, 704, 939, 1220
Bso31I	GGTCTC	2 cut(s)	1033, 1143
Bsp119I	TTCGAA	1 cut(s)	955
Bsp143I	GATC	5 cut(s)	136, 208, 651, 662, 1330
Bsp19I	CCATGG	1 cut(s)	417
BspACI	CCGC	6 cut(s)	298, 509, 576, 833, 1336, 1381
BspANI	GGCC	4 cut(s)	491, 704, 939, 1220
BspCNI	CTCAG	4 cut(s)	153, 283, 556, 1368
BspFNI	CGCG	5 cut(s)	315, 576, 776, 1338, 1383
BspLI	GGNNCC	2 cut(s)	335, 849
BspPI	GGATC	2 cut(s)	646, 670
BspT104I	TTCGAA	1 cut(s)	955
BspTNI	GGTCTC	2 cut(s)	1033, 1143
BsrBI	CCGCTC	1 cut(s)	298
BsrI	ACTGG	3 cut(s)	604, 907, 1115
BssECI	CCNNGG	2 cut(s)	417, 699
BssMI	GATC	5 cut(s)	136, 208, 651, 662, 1330
BssNAI	GTATAC	1 cut(s)	393
BssT1I	CCWWGG	1 cut(s)	417
Bst1107I	GTATAC	1 cut(s)	393
Bst4CI	ACNGT	5 cut(s)	478, 700, 998, 1112, 1229
Bst6I	CTCTTC	4 cut(s)	414, 480, 1116, 1330
BstAPI	GCANNNNNTGC	1 cut(s)	1007
BstBI	TTCGAA	1 cut(s)	955
BstC8I	GCNNGC	2 cut(s)	641, 1340
BstDEI	CTNAG	4 cut(s)	140, 291, 543, 1355
BstDSI	CCRYGG	2 cut(s)	417, 699
BstF5I	GGATG	3 cut(s)	884, 960, 1182
BstFNI	CGCG	5 cut(s)	315, 576, 776, 1338, 1383
BstHHI	GCGC	1 cut(s)	576
BstKTI	GATC	5 cut(s)	139, 211, 654, 665, 1333
BstMAI	GTCTC	4 cut(s)	278, 1033, 1143, 1353
BstMBI	GATC	5 cut(s)	136, 208, 651, 662, 1330
BstMCI	CGRYCG	2 cut(s)	54, 58
BstMWI	GCNNNNNNNGC	5 cut(s)	312, 509, 571, 728, 1007
BstNSI	RCATGY	2 cut(s)	768, 1253
BstSCI	CCNGG	2 cut(s)	123, 939
BstSFI	CTRYAG	1 cut(s)	687
BstUI	CGCG	5 cut(s)	315, 576, 776, 1338, 1383
BstV1I	GCAGC	5 cut(s)	140, 524, 718, 805, 997
BstX2I	RGATCY	2 cut(s)	136, 662
BstYI	RGATCY	2 cut(s)	136, 662
BstZ17I	GTATAC	1 cut(s)	393
BsuI	GTATCC	1 cut(s)	193
BsuRI	GGCC	4 cut(s)	491, 704, 939, 1220
BtgI	CCRYGG	2 cut(s)	417, 699
BtsCI	GGATG	3 cut(s)	884, 960, 1182
BtsIMutI	CAGTG	2 cut(s)	611, 1234
Cac8I	GCNNGC	2 cut(s)	641, 1340
CfoI	GCGC	1 cut(s)	576
CseI	GACGC	1 cut(s)	304
Csp6I	GTAC	4 cut(s)	547, 891, 994, 1108
CspCI	CAANNNNNGTGG	2 cut(s)	481, 516
CviAII	CATG	7 cut(s)	400, 418, 765, 815, 1007, 1021, 1250
CviQI	GTAC	4 cut(s)	547, 891, 994, 1108
DdeI	CTNAG	4 cut(s)	140, 291, 543, 1355
DpnI	GATC	5 cut(s)	138, 210, 653, 664, 1332
DpnII	GATC	5 cut(s)	136, 208, 651, 662, 1330
DraI	TTTAAA	1 cut(s)	744
DrdI	GACNNNNNNGTC	1 cut(s)	533
DseDI	GACNNNNNNGTC	1 cut(s)	533
EaeI	YGGCCR	1 cut(s)	702
Eam1104I	CTCTTC	4 cut(s)	414, 480, 1116, 1330
EarI	CTCTTC	4 cut(s)	414, 480, 1116, 1330
Eco130I	CCWWGG	1 cut(s)	417
Eco31I	GGTCTC	2 cut(s)	1033, 1143
Eco57I	CTGAAG	2 cut(s)	395, 1074
EcoRI	GAATTC	1 cut(s)	951
EcoT14I	CCWWGG	1 cut(s)	417
EcoT22I	ATGCAT	1 cut(s)	766
ErhI	CCWWGG	1 cut(s)	417
FaeI	CATG	7 cut(s)	403, 421, 768, 818, 1010, 1024, 1253
FatI	CATG	7 cut(s)	399, 417, 764, 814, 1006, 1020, 1249
FauI	CCCGC	2 cut(s)	291, 1388
FblI	GTMKAC	1 cut(s)	392
Fnu4HI	GCNGC	7 cut(s)	129, 510, 513, 732, 819, 834, 1011
FokI	GGATG	3 cut(s)	891, 947, 1189
Fsp4HI	GCNGC	7 cut(s)	129, 510, 513, 732, 819, 834, 1011
GlaI	GCGC	1 cut(s)	575
GluI	GCNGC	7 cut(s)	129, 510, 513, 732, 819, 834, 1011
HaeIII	GGCC	4 cut(s)	491, 704, 939, 1220
HapII	CCGG	5 cut(s)	125, 132, 191, 851, 940
HgaI	GACGC	1 cut(s)	304
HhaI	GCGC	1 cut(s)	576
Hin1II	CATG	7 cut(s)	403, 421, 768, 818, 1010, 1024, 1253
Hin6I	GCGC	1 cut(s)	574
HinP1I	GCGC	1 cut(s)	574
HincII	GTYRAC	1 cut(s)	1276
HindII	GTYRAC	1 cut(s)	1276
HinfI	GANTC	6 cut(s)	70, 120, 167, 194, 1097, 1316
HpaII	CCGG	5 cut(s)	125, 132, 191, 851, 940
HphI	GGTGA	4 cut(s)	494, 511, 797, 818
Hpy166II	GTNNAC	5 cut(s)	258, 393, 893, 994, 1276
Hpy188III	TCNNGA	3 cut(s)	239, 263, 1161
Hpy8I	GTNNAC	5 cut(s)	258, 393, 893, 994, 1276
Hpy99I	CGWCG	1 cut(s)	1105
HpyAV	CCTTC	2 cut(s)	236, 447
HpyCH4III	ACNGT	5 cut(s)	478, 700, 998, 1112, 1229
HpyCH4V	TGCA	8 cut(s)	179, 503, 599, 734, 764, 983, 1001, 1253
HpyF10VI	GCNNNNNNNGC	5 cut(s)	312, 509, 571, 728, 1007
HpyF3I	CTNAG	4 cut(s)	140, 291, 543, 1355
Hsp92II	CATG	7 cut(s)	403, 421, 768, 818, 1010, 1024, 1253
HspAI	GCGC	1 cut(s)	574
Kzo9I	GATC	5 cut(s)	136, 208, 651, 662, 1330
LmnI	GCTCC	3 cut(s)	295, 333, 853
Lsp1109I	GCAGC	5 cut(s)	140, 524, 718, 805, 997
LweI	GCATC	7 cut(s)	177, 512, 636, 701, 751, 969, 970
MaeIII	GTNAC	5 cut(s)	143, 403, 614, 682, 1016
MalI	GATC	5 cut(s)	138, 210, 653, 664, 1332
MbiI	CCGCTC	1 cut(s)	298
MboI	GATC	5 cut(s)	136, 208, 651, 662, 1330
MboII	GAAGA	4 cut(s)	401, 497, 1133, 1317
MfeI	CAATTG	1 cut(s)	1287
MflI	RGATCY	2 cut(s)	136, 662
MlsI	TGGCCA	1 cut(s)	704
MluNI	TGGCCA	1 cut(s)	704
MlyI	GAGTC	2 cut(s)	64, 1310
MmeI	TCCRAC	1 cut(s)	848
Mox20I	TGGCCA	1 cut(s)	704
Mph1103I	ATGCAT	1 cut(s)	766
MroXI	GAANNNNTTC	1 cut(s)	457
MscI	TGGCCA	1 cut(s)	704
MseI	TTAA	4 cut(s)	743, 840, 1049, 1061
Msp20I	TGGCCA	1 cut(s)	704
MspI	CCGG	5 cut(s)	125, 132, 191, 851, 940
MspR9I	CCNGG	2 cut(s)	125, 941
MunI	CAATTG	1 cut(s)	1287
Mva1269I	GAATGC	1 cut(s)	308
MvnI	CGCG	5 cut(s)	315, 576, 776, 1338, 1383
MwoI	GCNNNNNNNGC	5 cut(s)	312, 509, 571, 728, 1007
NciI	CCSGG	2 cut(s)	125, 941
NcoI	CCATGG	1 cut(s)	417
NdeII	GATC	5 cut(s)	136, 208, 651, 662, 1330
NlaIII	CATG	7 cut(s)	403, 421, 768, 818, 1010, 1024, 1253
NlaIV	GGNNCC	2 cut(s)	335, 849
NmuCI	GTSAC	1 cut(s)	1016
NsiI	ATGCAT	1 cut(s)	766
NspI	RCATGY	2 cut(s)	768, 1253
NspV	TTCGAA	1 cut(s)	955
PcsI	WCGNNNNNNNCGW	1 cut(s)	961
PctI	GAATGC	1 cut(s)	308
PdmI	GAANNNNTTC	1 cut(s)	457
PfeI	GAWTC	4 cut(s)	120, 167, 194, 1097
PflFI	GACNNNGTC	1 cut(s)	533
PkrI	GCNGC	7 cut(s)	130, 511, 514, 733, 820, 835, 1012
PleI	GAGTC	2 cut(s)	64, 1310
PpsI	GAGTC	2 cut(s)	64, 1310
PspN4I	GGNNCC	2 cut(s)	335, 849
PsuI	RGATCY	2 cut(s)	136, 662
PsyI	GACNNNGTC	1 cut(s)	533
RsaI	GTAC	4 cut(s)	548, 892, 995, 1109
RsaNI	GTAC	4 cut(s)	547, 891, 994, 1108
SaqAI	TTAA	4 cut(s)	743, 840, 1049, 1061
SatI	GCNGC	7 cut(s)	129, 510, 513, 732, 819, 834, 1011
Sau3AI	GATC	5 cut(s)	136, 208, 651, 662, 1330
SchI	GAGTC	2 cut(s)	64, 1310
ScrFI	CCNGG	2 cut(s)	125, 941
SetI	ASST	8 cut(s)	19, 65, 252, 366, 625, 675, 898, 1285
SfaNI	GCATC	7 cut(s)	177, 512, 636, 701, 751, 969, 970
SfcI	CTRYAG	1 cut(s)	687
SfuI	TTCGAA	1 cut(s)	955
SsiI	CCGC	6 cut(s)	298, 509, 576, 833, 1336, 1381
SspI	AATATT	1 cut(s)	499
StyD4I	CCNGG	2 cut(s)	123, 939
StyI	CCWWGG	1 cut(s)	417
TaaI	ACNGT	5 cut(s)	478, 700, 998, 1112, 1229
TaqI	TCGA	5 cut(s)	955, 1069, 1100, 1119, 1162
TaqII	GACCGA	2 cut(s)	40, 44
TatI	WGTACW	2 cut(s)	546, 890
TauI	GCSGC	2 cut(s)	512, 836
TfiI	GAWTC	4 cut(s)	120, 167, 194, 1097
Tru1I	TTAA	4 cut(s)	743, 840, 1049, 1061
Tru9I	TTAA	4 cut(s)	743, 840, 1049, 1061
TscAI	CASTG	2 cut(s)	611, 1234
TseFI	GTSAC	1 cut(s)	1016
TseI	GCWGC	5 cut(s)	128, 512, 731, 818, 1010
Tsp45I	GTSAC	1 cut(s)	1016
TspDTI	ATGAA	3 cut(s)	265, 450, 995
TspGWI	ACGGA	1 cut(s)	160
TspRI	CASTG	2 cut(s)	611, 1234
Tth111I	GACNNNGTC	1 cut(s)	533
XapI	RAATTY	5 cut(s)	111, 339, 593, 826, 951
XceI	RCATGY	2 cut(s)	768, 1253
XmiI	GTMKAC	1 cut(s)	392
XmnI	GAANNNNTTC	1 cut(s)	457
Zsp2I	ATGCAT	1 cut(s)	766

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.