Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8210604.1

Orthogroup ID

OG0001226

Physical Location & Seq

Genomic Coordinates Forward (+)

435 .. 713

Gene Structure 279 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8210604.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 279 bp

atgatggctctctgggtccggaaatcacgagactttatgatcaaccgtttcaagtccaagatgggttctttgggtttgatccatttcagctcttgcagttcatctttcactcgtaaatctccggtcctggttccttttccggcttcatttgctcaaaaccacagaatcccggagggagagtttggaaacccgccggcccatttccgtttctgctctcgtcgttttgaatccggtaaagcagaaacgctctacgacgagggtgatgccaatcaggtataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003826 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005759 GO:0006082 GO:0006520 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009063 GO:0009081 GO:0009083 GO:0009987 GO:0016054 GO:0016491 GO:0017086 GO:0019752 GO:0031974 GO:0032991 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043436 GO:0044237 GO:0044238 GO:0044248 GO:0044281 GO:0044282 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0046395 GO:0055114 GO:0070013 GO:0071704 GO:0098798 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko00280 ko00640 ko01100 ko01110 ko01130 map00280 map00640 map01100 map01110 map01130

Pfam Domains

Protein Families

E1_dh

Protein Analysis

92

Amino Acids

10.48

Weight (kDa)

9.78

Isoelectric Point (pI)

53.12

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001226)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G21400 AT1G21400 AT1G21400 AT1G21400 AT1G21400 AT1G21400 AT5G09300 AT5G09300 AT5G09300 AT5G09300
fragaria_vesca	FvH4_1g24490 FvH4_1g24490 FvH4_1g24490 FvH4_1g24490 FvH4_1g24490 FvH4_1g24490 FvH4_1g24490 FvH4_1g24490 FvH4_1g24490
malus_domestica	MD01G1005600.v1.1 MD15G1133900.v1.1
prunus_persica	Prupe.4G272100_v2.0.a1
pyrus_communis	pycom01g01240 pycom15g12070
rosa_chinensis	RchiOBHm_Chr2g0121681 RchiOBHm_Chr2g0121691 RchiOBHm_Chr2g0121741 RchiOBHm_Chr2g0121751
rosa_laevigata	RLG00000018629 RLG00000018630
rosa_multiflora	Rmu_co8210604.1_g000001 Rmu_co8500107.1_g000001 Rmu_sc0000315.1_g000007 Rmu_sc0002194.1_g000001 Rmu_sc0002194.1_g000003
rosa_roxburghii	Rroxscaffold_2G00122230 Rroxscaffold_2G00122280 Rroxscaffold_2G00122300 Rroxscaffold_2G00122320
rosa_rugosa	Rorug02G0234000 Rorug02G0234100
rosa_samantha	Rh2AG290900 Rh2AG291100 Rh2AG291300 Rh2AG291400 Rh2BG301700 Rh2BG301900 Rh2CG280500 Rh2CG280700 Rh2DG315500 Rh2DG315600 Rh2DG315800 Rh2DG315900
rosa_wichuraiana	Rw2G023330 Rw2G023350 Rw2G023360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	18
AciI	CCGC	1 cut(s)	191
AclWI	GGATC	1 cut(s)	73
AgsI	TTSAA	2 cut(s)	52, 227
AjnI	CCWGG	1 cut(s)	126
AluBI	AGCT	1 cut(s)	90
AluI	AGCT	1 cut(s)	90
Alw26I	GTCTC	1 cut(s)	24
AlwI	GGATC	1 cut(s)	73
Aor13HI	TCCGGA	1 cut(s)	18
AoxI	GGCC	1 cut(s)	195
AspS9I	GGNCC	3 cut(s)	16, 124, 196
AsuC2I	CCSGG	1 cut(s)	170
AsuHPI	GGTGA	1 cut(s)	272
AvaII	GGWCC	2 cut(s)	16, 124
BauI	CACGAG	1 cut(s)	27
BccI	CCATC	1 cut(s)	55
BcgI	CGANNNNNNTGC	2 cut(s)	245, 279
BciT130I	CCWGG	1 cut(s)	128
BclI	TGATCA	1 cut(s)	39
BcnI	CCSGG	1 cut(s)	170
BcoDI	GTCTC	1 cut(s)	24
Bme1390I	CCNGG	2 cut(s)	128, 170
Bme18I	GGWCC	2 cut(s)	16, 124
BmgT120I	GGNCC	3 cut(s)	16, 124, 196
BmiI	GGNNCC	2 cut(s)	17, 132
BmrFI	CCNGG	2 cut(s)	128, 170
BmsI	GCATC	1 cut(s)	253
BpuMI	CCSGG	1 cut(s)	170
BsaBI	GATNNNNATC	1 cut(s)	267
BsaWI	WCCGGW	3 cut(s)	18, 121, 230
BsaXI	ACNNNNNCTCC	2 cut(s)	164, 194
Bse118I	RCCGGY	1 cut(s)	193
Bse8I	GATNNNNATC	1 cut(s)	267
BseAI	TCCGGA	1 cut(s)	18
BseBI	CCWGG	1 cut(s)	128
BseJI	GATNNNNATC	1 cut(s)	267
BshFI	GGCC	1 cut(s)	197
BsiSI	CCGG	6 cut(s)	19, 122, 140, 170, 194, 231
BsmAI	GTCTC	1 cut(s)	24
BsnI	GGCC	1 cut(s)	197
Bsp13I	TCCGGA	1 cut(s)	18
Bsp143I	GATC	2 cut(s)	39, 78
BspACI	CCGC	1 cut(s)	191
BspANI	GGCC	1 cut(s)	197
BspEI	TCCGGA	1 cut(s)	18
BspLI	GGNNCC	2 cut(s)	17, 132
BspPI	GGATC	1 cut(s)	73
BsrFI	RCCGGY	1 cut(s)	193
BssAI	RCCGGY	1 cut(s)	193
BssMI	GATC	2 cut(s)	39, 78
BssSI	CACGAG	1 cut(s)	27
Bst2BI	CACGAG	1 cut(s)	27
Bst2UI	CCWGG	1 cut(s)	128
Bst4CI	ACNGT	1 cut(s)	47
BstC8I	GCNNGC	1 cut(s)	195
BstKTI	GATC	2 cut(s)	42, 81
BstMAI	GTCTC	1 cut(s)	24
BstMBI	GATC	2 cut(s)	39, 78
BstMWI	GCNNNNNNNGC	1 cut(s)	149
BstNI	CCWGG	1 cut(s)	128
BstSCI	CCNGG	2 cut(s)	126, 168
BsuRI	GGCC	1 cut(s)	197
Cac8I	GCNNGC	1 cut(s)	195
Cfr10I	RCCGGY	1 cut(s)	193
Cfr13I	GGNCC	3 cut(s)	16, 124, 196
CviJI	RGCY	4 cut(s)	8, 90, 143, 197
CviKI_1	RGCY	4 cut(s)	8, 90, 143, 197
DpnI	GATC	2 cut(s)	41, 80
DpnII	GATC	2 cut(s)	39, 78
Eco47I	GGWCC	2 cut(s)	16, 124
EcoRII	CCWGG	1 cut(s)	126
FaiI	YATR	2 cut(s)	38, 277
FauI	CCCGC	1 cut(s)	198
FbaI	TGATCA	1 cut(s)	39
HaeIII	GGCC	1 cut(s)	197
HapII	CCGG	6 cut(s)	19, 122, 140, 170, 194, 231
HinfI	GANTC	2 cut(s)	165, 227
HpaII	CCGG	6 cut(s)	19, 122, 140, 170, 194, 231
HphI	GGTGA	1 cut(s)	272
Hpy188III	TCNNGA	2 cut(s)	19, 27
Hpy99I	CGWCG	2 cut(s)	222, 257
HpyCH4III	ACNGT	1 cut(s)	47
HpyCH4V	TGCA	1 cut(s)	96
HpyF10VI	GCNNNNNNNGC	1 cut(s)	149
Kpn2I	TCCGGA	1 cut(s)	18
KroI	GCCGGC	1 cut(s)	193
KroNI	GCCGGC	1 cut(s)	195
Ksp22I	TGATCA	1 cut(s)	39
Kzo9I	GATC	2 cut(s)	39, 78
LpnPI	CCDG	9 cut(s)	32, 113, 135, 140, 153, 183, 207, 244, 257
LweI	GCATC	1 cut(s)	253
MalI	GATC	2 cut(s)	41, 80
MboI	GATC	2 cut(s)	39, 78
MnlI	CCTC	2 cut(s)	166, 250
MroI	TCCGGA	1 cut(s)	18
MroNI	GCCGGC	1 cut(s)	193
MspI	CCGG	6 cut(s)	19, 122, 140, 170, 194, 231
MspR9I	CCNGG	2 cut(s)	128, 170
MvaI	CCWGG	1 cut(s)	128
MwoI	GCNNNNNNNGC	1 cut(s)	149
NaeI	GCCGGC	1 cut(s)	195
NciI	CCSGG	1 cut(s)	170
NdeII	GATC	2 cut(s)	39, 78
NgoMIV	GCCGGC	1 cut(s)	193
NlaIV	GGNNCC	2 cut(s)	17, 132
PdiI	GCCGGC	1 cut(s)	195
PfeI	GAWTC	2 cut(s)	165, 227
PfoI	TCCNGGA	1 cut(s)	168
Psp6I	CCWGG	1 cut(s)	126
PspGI	CCWGG	1 cut(s)	126
PspN4I	GGNNCC	2 cut(s)	17, 132
PspPI	GGNCC	3 cut(s)	16, 124, 196
Sau3AI	GATC	2 cut(s)	39, 78
Sau96I	GGNCC	3 cut(s)	16, 124, 196
ScrFI	CCNGG	2 cut(s)	128, 170
SetI	ASST	2 cut(s)	92, 276
SfaNI	GCATC	1 cut(s)	253
SinI	GGWCC	2 cut(s)	16, 124
SsiI	CCGC	1 cut(s)	191
StyD4I	CCNGG	2 cut(s)	126, 168
TaaI	ACNGT	1 cut(s)	47
TfiI	GAWTC	2 cut(s)	165, 227
TspDTI	ATGAA	2 cut(s)	90, 135
TspGWI	ACGGA	1 cut(s)	194
VpaK11BI	GGWCC	2 cut(s)	16, 124

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.