Rh2DG315500

2-oxoisovalerate dehydrogenase subunit alpha

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
Physical Location & Seq
Reverse (-)
39030427 .. 39032304
1878 bp
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UTR
Exon/CDS
Intron
Rh2DG315500.1

Sequence Viewer

Length: 543 bp
ATGGACAGAAAAGATGCATGTGTGGTCACATATGTTGGTGATGGTGGCACAAGCGAGGGTGACTTCCATGCTGCTCTAAATTTTGCGGCTGTTACGGAGGCTCCAGTTATAGTCATTTGTCGGAACAACGGATGGGCTATCAGTACACCCACTTCAGACCAGTTTCGGAGTGATGGTGTTGTTGTAAAAGGTCGGGCTTATGGAATCCGAAGTATCCGAGTAGATGGGAATGATGCACTTGCCATGTATAGTGTAGTTTATGTTGCACGCGAAATGGCAATCAGTGAACAGAGACCAATCTTAATAGAGGCATTAACATATCGAGTTGGACATCATTCCACATCAGATGATTCGACCAAGTATCGCCCAGTTGATGAGATTGAAGTGTGGAAAGTGGAACGAGACCCAGTAACTCGATTTAGAAAATGGATAGAAAGAAATGGTTGGTGGAGTGGTGAGGCAGAGATAGAGGCTAGAAACAGTGCGAGAAAGCAGGTAATTCCTTCTGTTCTATCTGAAAGCAACTTGAGAACAACAAACTAA

Protein Analysis

180

Amino Acids

20.15

Weight (kDa)

5.96

Isoelectric Point (pI)

37.08

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
E1_dh PF00676 1 - 167 4.1e-59 Dehydrogenase E1 component
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 484
AccII CGCG 1 cut(s) 270
AciI CCGC 1 cut(s) 86
AcsI RAATTY 1 cut(s) 79
AcuI CTGAAG 1 cut(s) 138
AfaI GTAC 1 cut(s) 145
AgsI TTSAA 1 cut(s) 383
Alw26I GTCTC 2 cut(s) 286, 396
ApeKI GCWGC 1 cut(s) 71
ApoI RAATTY 1 cut(s) 79
AsuHPI GGTGA 3 cut(s) 50, 71, 467
BarI GAAGNNNNNNTAC 2 cut(s) 136, 168
BbvI GCAGC 1 cut(s) 58
BccI CCATC 4 cut(s) 35, 126, 167, 218
BciVI GTATCC 1 cut(s) 224
BcoDI GTCTC 2 cut(s) 286, 396
BfaI CTAG 1 cut(s) 474
BfuAI ACCTGC 1 cut(s) 484
BfuI GTATCC 1 cut(s) 224
BisI GCNGC 2 cut(s) 72, 87
BlsI GCNGC 2 cut(s) 73, 88
BmiI GGNNCC 1 cut(s) 102
BmrI ACTGGG 2 cut(s) 362, 401
BmsI GCATC 2 cut(s) 4, 223
BmuI ACTGGG 2 cut(s) 362, 401
BpmI CTGGAG 1 cut(s) 87
BsaI GGTCTC 2 cut(s) 286, 396
BsaXI ACNNNNNCTCC 4 cut(s) 85, 115, 160, 190
Bse1I ACTGG 4 cut(s) 104, 160, 368, 407
BseGI GGATG 1 cut(s) 137
BseNI ACTGG 4 cut(s) 104, 160, 368, 407
BseXI GCAGC 1 cut(s) 58
Bsh1236I CGCG 1 cut(s) 270
BsmAI GTCTC 2 cut(s) 286, 396
Bso31I GGTCTC 2 cut(s) 286, 396
BspACI CCGC 1 cut(s) 86
BspFNI CGCG 1 cut(s) 270
BspLI GGNNCC 1 cut(s) 102
BspMI ACCTGC 1 cut(s) 484
BspTNI GGTCTC 2 cut(s) 286, 396
BsrI ACTGG 4 cut(s) 104, 160, 368, 407
Bst4CI ACNGT 1 cut(s) 482
BstC8I GCNNGC 1 cut(s) 268
BstF5I GGATG 1 cut(s) 137
BstFNI CGCG 1 cut(s) 270
BstMAI GTCTC 2 cut(s) 286, 396
BstNSI RCATGY 1 cut(s) 21
BstUI CGCG 1 cut(s) 270
BstV1I GCAGC 1 cut(s) 58
BsuI GTATCC 1 cut(s) 224
BtsCI GGATG 1 cut(s) 137
BtsIMutI CAGTG 2 cut(s) 289, 487
BveI ACCTGC 1 cut(s) 484
Cac8I GCNNGC 1 cut(s) 268
Csp6I GTAC 1 cut(s) 144
CviAII CATG 3 cut(s) 18, 68, 244
CviJI RGCY 5 cut(s) 89, 101, 137, 197, 473
CviKI_1 RGCY 5 cut(s) 89, 101, 137, 197, 473
CviQI GTAC 1 cut(s) 144
Eco31I GGTCTC 2 cut(s) 286, 396
Eco57I CTGAAG 1 cut(s) 138
EcoT22I ATGCAT 1 cut(s) 19
FaeI CATG 3 cut(s) 21, 71, 247
FatI CATG 3 cut(s) 17, 67, 243
FauNDI CATATG 1 cut(s) 31
Fnu4HI GCNGC 2 cut(s) 72, 87
FokI GGATG 1 cut(s) 144
Fsp4HI GCNGC 2 cut(s) 72, 87
FspBI CTAG 1 cut(s) 474
GluI GCNGC 2 cut(s) 72, 87
GsuI CTGGAG 1 cut(s) 87
Hin1II CATG 3 cut(s) 21, 71, 247
HinfI GANTC 2 cut(s) 204, 350
HphI GGTGA 3 cut(s) 50, 71, 467
Hpy166II GTNNAC 2 cut(s) 146, 287
Hpy188I TCNGA 7 cut(s) 123, 157, 168, 209, 218, 346, 517
Hpy8I GTNNAC 2 cut(s) 146, 287
HpyAV CCTTC 1 cut(s) 513
HpyCH4III ACNGT 1 cut(s) 482
HpyCH4V TGCA 3 cut(s) 17, 236, 266
Hsp92II CATG 3 cut(s) 21, 71, 247
LmnI GCTCC 1 cut(s) 106
LpnPI CCDG 5 cut(s) 117, 173, 381, 420, 479
Lsp1109I GCAGC 1 cut(s) 58
LweI GCATC 2 cut(s) 4, 223
MaeI CTAG 1 cut(s) 474
MaeIII GTNAC 4 cut(s) 25, 59, 91, 409
MluCI AATT 2 cut(s) 79, 498
MmeI TCCRAC 2 cut(s) 101, 307
MnlI CCTC 5 cut(s) 49, 91, 301, 451, 463
Mph1103I ATGCAT 1 cut(s) 19
MseI TTAA 2 cut(s) 302, 314
MvnI CGCG 1 cut(s) 270
NdeI CATATG 1 cut(s) 31
NlaIII CATG 3 cut(s) 21, 71, 247
NlaIV GGNNCC 1 cut(s) 102
NmuCI GTSAC 2 cut(s) 25, 59
NsiI ATGCAT 1 cut(s) 19
NspI RCATGY 1 cut(s) 21
PfeI GAWTC 2 cut(s) 204, 350
PkrI GCNGC 2 cut(s) 73, 88
PspN4I GGNNCC 1 cut(s) 102
RsaI GTAC 1 cut(s) 145
RsaNI GTAC 1 cut(s) 144
SaqAI TTAA 2 cut(s) 302, 314
SatI GCNGC 2 cut(s) 72, 87
SetI ASST 2 cut(s) 193, 498
SfaNI GCATC 2 cut(s) 4, 223
SmlI CTYRAG 1 cut(s) 526
SmoI CTYRAG 1 cut(s) 526
Sse9I AATT 2 cut(s) 79, 498
SsiI CCGC 1 cut(s) 86
SspMI CTAG 1 cut(s) 474
TaaI ACNGT 1 cut(s) 482
TaqI TCGA 3 cut(s) 322, 353, 415
TasI AATT 2 cut(s) 79, 498
TatI WGTACW 1 cut(s) 143
TauI GCSGC 1 cut(s) 89
TfiI GAWTC 2 cut(s) 204, 350
Tru1I TTAA 2 cut(s) 302, 314
Tru9I TTAA 2 cut(s) 302, 314
TscAI CASTG 2 cut(s) 289, 487
TseFI GTSAC 2 cut(s) 25, 59
TseI GCWGC 1 cut(s) 71
Tsp45I GTSAC 2 cut(s) 25, 59
TspGWI ACGGA 2 cut(s) 110, 144
TspRI CASTG 2 cut(s) 289, 487
XapI RAATTY 1 cut(s) 79
XceI RCATGY 1 cut(s) 21
XspI CTAG 1 cut(s) 474
Zsp2I ATGCAT 1 cut(s) 19
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.