FvH4_1g24490

2-oxoisovalerate dehydrogenase subunit alpha

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
Physical Location & Seq
Reverse (-)
16327291 .. 16331115
3825 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g24490.t8

Sequence Viewer

Length: 1383 bp
ATGATCAACCATTTCAAATCCAAGATGGGTTCTTTGGGTTCCATCCGTTTCTGCTCTCGGAAATCTCCGGTTCCGGTTCCTTTTCCAGCTTCATTTGCTCAAAACGTGAGGCTCCCGGAGGCCCATTTCCATTTCTGCTCTCGTCGTTTTGAATCCGGCAAACCAGAAACGATCTCTGACGAGGTTGATACCAATCAGGTTTTGGATTTACCAGAAGGGAAGGTCAAATTTATTTCTGAAATGAGGTTCATATCAGAGTCGACTAAGGAGCGGGTGCCATGTTATAGGGTCCTTGATGACAATGGGAAGCTAATTATGTCCAGCAACTATGCTGAGGTTAGCCAGGAAGTTGCTGTAAAAATGTACACAGACATGGTGATGCTTCAAACCATGGACACCATTTTCTATGAAGCACAGAGGCAAGGAAGAATTTCTTTTTATCTGACTACAGTTGGTGAAGAAGCCATCAATATTGCATCTGCTGCAGCACTCACCTTTGATGACATTGTCCTTCCTCAGTACCGGGAGCCAGGAGTTCTAATATGGCGTGGTTTCACTGTACAAGAATTCGCAAACCAGTGTTTCAGTAACAAAGCTGATTATGGGAAAGGCAGGCAGATGCCAATCCATTATGGCTCTAACAAGCACAATTACTTCACTGTATCATCAACCATAGCTACACAACTTCCACAGGCTGTTGGCGTTGCATATTCTCTGAAGATGGACAGAAAAGATGCATGTGTGGTCACATATATCGGTGATGGTGGCACAAGCGAGGGTGATTTCCATGCTGCTCTAAATTTTGCGGCTGTTACGGAGGCTCCAGTTATTTTCATTTGTCGGAACAATGGATGGGCTATCAGTACACCTACTTCAGACCAGTTTAGGAGTGATGGTGTTGTTGTCAAAGGTCAAGCTTATGGAATCCGAAGTATCCGAGTAGATGGGAATGATGCACTTGCCATGTATAGTGCAGTTCACACTGCACGTGAAATGGCAATCAGTGAACAGAGACCAATCTTAATAGAGGCAATAACATATCGAGTTGGACACCATTCCACATCAGATGATTCGACCAAGTACCGCCCTGTTAATGAGATTGAAAGTTGGAAAGTGGAACGAGACCCAGTAAATCGATTTAGGAAATGGATTGAAAGAAACGGTTGGTGGAGTGGTGAGGCAGAGATAGAAGCTAGAAACAGTGCGAGAAAGCAGTTATTACATGCAATCCAAGAAGCTGAGAAAGTTGAGAAGCCACCAGTAGCTGACATGTTCACAGATGTATACGACTGCCCTCCTTCCAATCTTGTCGAGCAGGAGAAACGGCTAAGAGAGACAATTAAGAGACACTCCCAGGATTACCCATCTGATGTTCCTGTGTAA

Protein Analysis

461

Amino Acids

51.99

Weight (kDa)

6.17

Isoelectric Point (pI)

47.16

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
E1_dh PF00676 124 - 420 1.1e-94 Dehydrogenase E1 component
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 274
AccBSI CCGCTC 1 cut(s) 271
AccI GTMKAC 2 cut(s) 260, 1284
AciI CCGC 3 cut(s) 271, 806, 1084
AcsI RAATTY 4 cut(s) 227, 429, 566, 799
AcuI CTGAAG 2 cut(s) 737, 858
AcvI CACGTG 1 cut(s) 989
AfaI GTAC 5 cut(s) 365, 521, 561, 865, 1082
AflIII ACRYGT 1 cut(s) 1269
AgsI TTSAA 5 cut(s) 16, 152, 386, 1103, 1154
AjnI CCWGG 3 cut(s) 342, 529, 1353
AluBI AGCT 8 cut(s) 89, 310, 596, 677, 917, 1193, 1238, 1265
AluI AGCT 8 cut(s) 89, 310, 596, 677, 917, 1193, 1238, 1265
Alw26I GTCTC 4 cut(s) 1006, 1116, 1328, 1339
AlwNI CAGNNNCTG 1 cut(s) 1265
AoxI GGCC 1 cut(s) 120
ApeKI GCWGC 3 cut(s) 482, 485, 791
ApoI RAATTY 4 cut(s) 227, 429, 566, 799
Asp700I GAANNNNTTC 1 cut(s) 430
AspS9I GGNCC 2 cut(s) 121, 289
AsuC2I CCSGG 2 cut(s) 116, 524
AsuHPI GGTGA 6 cut(s) 388, 467, 484, 770, 791, 1187
AvaII GGWCC 1 cut(s) 289
BanI GGYRCC 1 cut(s) 274
BarI GAAGNNNNNNTAC 2 cut(s) 856, 888
BbrPI CACGTG 1 cut(s) 989
BbvCI CCTCAGC 1 cut(s) 333
BbvI GCAGC 3 cut(s) 469, 497, 778
BccI CCATC 9 cut(s) 19, 50, 473, 715, 755, 846, 887, 938, 1372
BceAI ACGGC 1 cut(s) 1340
BciT130I CCWGG 3 cut(s) 344, 531, 1355
BciVI GTATCC 1 cut(s) 944
BclI TGATCA 1 cut(s) 3
BcnI CCSGG 2 cut(s) 116, 524
BcoDI GTCTC 4 cut(s) 1006, 1116, 1328, 1339
BfaI CTAG 1 cut(s) 1194
BfmI CTRYAG 2 cut(s) 447, 483
BfuI GTATCC 1 cut(s) 944
BisI GCNGC 4 cut(s) 483, 486, 792, 807
BlsI GCNGC 4 cut(s) 484, 487, 793, 808
Bme1390I CCNGG 5 cut(s) 116, 344, 524, 531, 1355
Bme18I GGWCC 1 cut(s) 289
BmgT120I GGNCC 2 cut(s) 121, 289
BmiI GGNNCC 8 cut(s) 40, 72, 78, 113, 276, 290, 528, 822
BmrFI CCNGG 5 cut(s) 116, 344, 524, 531, 1355
BmrI ACTGGG 1 cut(s) 1121
BmsI GCATC 5 cut(s) 369, 485, 609, 724, 943
BmuI ACTGGG 1 cut(s) 1121
BpmI CTGGAG 1 cut(s) 807
Bpu10I CCTNAGC 1 cut(s) 333
BpuMI CCSGG 2 cut(s) 116, 524
Bsa29I ATCGAT 1 cut(s) 1135
BsaAI YACGTR 1 cut(s) 989
BsaBI GATNNNNATC 2 cut(s) 192, 623
BsaI GGTCTC 2 cut(s) 1006, 1116
BsaJI CCNNGG 2 cut(s) 390, 1353
BsaWI WCCGGW 2 cut(s) 67, 73
BsaXI ACNNNNNCTCC 4 cut(s) 805, 835, 880, 910
Bse1I ACTGG 5 cut(s) 577, 824, 880, 1127, 1259
Bse8I GATNNNNATC 2 cut(s) 192, 623
BseBI CCWGG 3 cut(s) 344, 531, 1355
BseCI ATCGAT 1 cut(s) 1135
BseDI CCNNGG 2 cut(s) 390, 1353
BseGI GGATG 2 cut(s) 42, 857
BseJI GATNNNNATC 2 cut(s) 192, 623
BseMII CTCAG 3 cut(s) 324, 530, 1230
BseNI ACTGG 5 cut(s) 577, 824, 880, 1127, 1259
BseXI GCAGC 3 cut(s) 469, 497, 778
BsgI GTGCAG 2 cut(s) 969, 993
BshFI GGCC 1 cut(s) 122
BshNI GGYRCC 1 cut(s) 274
BshVI ATCGAT 1 cut(s) 1135
BsiSI CCGG 5 cut(s) 68, 74, 116, 156, 523
BsmAI GTCTC 4 cut(s) 1006, 1116, 1328, 1339
BsnI GGCC 1 cut(s) 122
Bso31I GGTCTC 2 cut(s) 1006, 1116
Bsp1407I TGTACA 2 cut(s) 363, 559
Bsp143I GATC 2 cut(s) 3, 171
Bsp19I CCATGG 1 cut(s) 390
BspACI CCGC 3 cut(s) 271, 806, 1084
BspANI GGCC 1 cut(s) 122
BspCNI CTCAG 3 cut(s) 325, 529, 1231
BspDI ATCGAT 1 cut(s) 1135
BspLI GGNNCC 8 cut(s) 40, 72, 78, 113, 276, 290, 528, 822
BspMAI CTGCAG 1 cut(s) 487
BspT107I GGYRCC 1 cut(s) 274
BspTNI GGTCTC 2 cut(s) 1006, 1116
BsrBI CCGCTC 1 cut(s) 271
BsrGI TGTACA 2 cut(s) 363, 559
BsrI ACTGG 5 cut(s) 577, 824, 880, 1127, 1259
BssECI CCNNGG 2 cut(s) 390, 1353
BssMI GATC 2 cut(s) 3, 171
BssNAI GTATAC 1 cut(s) 1285
BssT1I CCWWGG 1 cut(s) 390
Bst1107I GTATAC 1 cut(s) 1285
Bst2UI CCWGG 3 cut(s) 344, 531, 1355
Bst4CI ACNGT 5 cut(s) 451, 559, 661, 1163, 1202
BstAPI GCANNNNNTGC 1 cut(s) 482
BstAUI TGTACA 2 cut(s) 363, 559
BstBAI YACGTR 1 cut(s) 989
BstC8I GCNNGC 1 cut(s) 614
BstDEI CTNAG 5 cut(s) 264, 333, 516, 1239, 1328
BstDSI CCRYGG 1 cut(s) 390
BstF5I GGATG 2 cut(s) 42, 857
BstKTI GATC 2 cut(s) 6, 174
BstMAI GTCTC 4 cut(s) 1006, 1116, 1328, 1339
BstMBI GATC 2 cut(s) 3, 171
BstMWI GCNNNNNNNGC 2 cut(s) 95, 482
BstNI CCWGG 3 cut(s) 344, 531, 1355
BstNSI RCATGY 3 cut(s) 741, 1226, 1273
BstSCI CCNGG 5 cut(s) 114, 342, 522, 529, 1353
BstSFI CTRYAG 2 cut(s) 447, 483
BstV1I GCAGC 3 cut(s) 469, 497, 778
BstZ17I GTATAC 1 cut(s) 1285
Bsu15I ATCGAT 1 cut(s) 1135
BsuI GTATCC 1 cut(s) 944
BsuRI GGCC 1 cut(s) 122
BsuTUI ATCGAT 1 cut(s) 1135
BtgI CCRYGG 1 cut(s) 390
BtsCI GGATG 2 cut(s) 42, 857
BtsI GCAGTG 1 cut(s) 981
BtsIMutI CAGTG 6 cut(s) 555, 584, 657, 981, 1009, 1207
Cac8I GCNNGC 1 cut(s) 614
CaiI CAGNNNCTG 1 cut(s) 1265
Cfr13I GGNCC 2 cut(s) 121, 289
ClaI ATCGAT 1 cut(s) 1135
Csp6I GTAC 5 cut(s) 364, 520, 560, 864, 1081
CviAII CATG 8 cut(s) 279, 373, 391, 738, 788, 964, 1223, 1270
CviQI GTAC 5 cut(s) 364, 520, 560, 864, 1081
DdeI CTNAG 5 cut(s) 264, 333, 516, 1239, 1328
DpnI GATC 2 cut(s) 5, 173
DpnII GATC 2 cut(s) 3, 171
Eco130I CCWWGG 1 cut(s) 390
Eco31I GGTCTC 2 cut(s) 1006, 1116
Eco47I GGWCC 1 cut(s) 289
Eco57I CTGAAG 2 cut(s) 737, 858
Eco72I CACGTG 1 cut(s) 989
EcoO109I RGGNCCY 1 cut(s) 289
EcoRI GAATTC 1 cut(s) 566
EcoRII CCWGG 3 cut(s) 342, 529, 1353
EcoT14I CCWWGG 1 cut(s) 390
EcoT22I ATGCAT 1 cut(s) 739
ErhI CCWWGG 1 cut(s) 390
FaeI CATG 8 cut(s) 282, 376, 394, 741, 791, 967, 1226, 1273
FalI AAGNNNNNCTT 2 cut(s) 418, 450
FatI CATG 8 cut(s) 278, 372, 390, 737, 787, 963, 1222, 1269
FauI CCCGC 1 cut(s) 264
FbaI TGATCA 1 cut(s) 3
FblI GTMKAC 2 cut(s) 260, 1284
Fnu4HI GCNGC 4 cut(s) 483, 486, 792, 807
FokI GGATG 2 cut(s) 29, 864
Fsp4HI GCNGC 4 cut(s) 483, 486, 792, 807
FspBI CTAG 1 cut(s) 1194
GluI GCNGC 4 cut(s) 483, 486, 792, 807
GsuI CTGGAG 1 cut(s) 807
HaeIII GGCC 1 cut(s) 122
HapII CCGG 5 cut(s) 68, 74, 116, 156, 523
Hin1II CATG 8 cut(s) 282, 376, 394, 741, 791, 967, 1226, 1273
HincII GTYRAC 1 cut(s) 261
HindII GTYRAC 1 cut(s) 261
HindIII AAGCTT 1 cut(s) 915
HinfI GANTC 4 cut(s) 152, 257, 924, 1070
HpaII CCGG 5 cut(s) 68, 74, 116, 156, 523
HphI GGTGA 6 cut(s) 388, 467, 484, 770, 791, 1187
Hpy166II GTNNAC 7 cut(s) 261, 366, 866, 979, 1007, 1275, 1285
Hpy8I GTNNAC 7 cut(s) 261, 366, 866, 979, 1007, 1275, 1285
Hpy99I CGWCG 1 cut(s) 147
HpyAV CCTTC 4 cut(s) 209, 214, 521, 1308
HpyCH4III ACNGT 5 cut(s) 451, 559, 661, 1163, 1202
HpyCH4IV ACGT 2 cut(s) 105, 988
HpyCH4V TGCA 8 cut(s) 476, 485, 707, 737, 956, 974, 986, 1226
HpyF10VI GCNNNNNNNGC 2 cut(s) 95, 482
HpyF3I CTNAG 5 cut(s) 264, 333, 516, 1239, 1328
HpySE526I ACGT 2 cut(s) 105, 988
Hsp92II CATG 8 cut(s) 282, 376, 394, 741, 791, 967, 1226, 1273
Ksp22I TGATCA 1 cut(s) 3
Kzo9I GATC 2 cut(s) 3, 171
LmnI GCTCC 4 cut(s) 117, 268, 526, 826
Lsp1109I GCAGC 3 cut(s) 469, 497, 778
LweI GCATC 5 cut(s) 369, 485, 609, 724, 943
MaeI CTAG 1 cut(s) 1194
MaeII ACGT 2 cut(s) 105, 988
MaeIII GTNAC 3 cut(s) 587, 745, 811
MalI GATC 2 cut(s) 5, 173
MbiI CCGCTC 1 cut(s) 271
MboI GATC 2 cut(s) 3, 171
MboII GAAGA 3 cut(s) 438, 470, 730
MluCI AATT 7 cut(s) 227, 312, 429, 566, 649, 799, 1338
MlyI GAGTC 1 cut(s) 266
MmeI TCCRAC 3 cut(s) 821, 1027, 1088
Mph1103I ATGCAT 1 cut(s) 739
MroXI GAANNNNTTC 1 cut(s) 430
MseI TTAA 3 cut(s) 1022, 1092, 1341
MslI CAYNNNNRTG 2 cut(s) 371, 377
MspI CCGG 5 cut(s) 68, 74, 116, 156, 523
MspR9I CCNGG 5 cut(s) 116, 344, 524, 531, 1355
MvaI CCWGG 3 cut(s) 344, 531, 1355
MwoI GCNNNNNNNGC 2 cut(s) 95, 482
NciI CCSGG 2 cut(s) 116, 524
NcoI CCATGG 1 cut(s) 390
NdeII GATC 2 cut(s) 3, 171
NlaIII CATG 8 cut(s) 282, 376, 394, 741, 791, 967, 1226, 1273
NlaIV GGNNCC 8 cut(s) 40, 72, 78, 113, 276, 290, 528, 822
NmuCI GTSAC 1 cut(s) 745
NsiI ATGCAT 1 cut(s) 739
NspI RCATGY 3 cut(s) 741, 1226, 1273
PciI ACATGT 1 cut(s) 1269
PdmI GAANNNNTTC 1 cut(s) 430
PfeI GAWTC 3 cut(s) 152, 924, 1070
PflFI GACNNNGTC 1 cut(s) 506
PfoI TCCNGGA 1 cut(s) 114
PkrI GCNGC 4 cut(s) 484, 487, 793, 808
PleI GAGTC 1 cut(s) 265
PmaCI CACGTG 1 cut(s) 989
PmlI CACGTG 1 cut(s) 989
PpsI GAGTC 1 cut(s) 265
Ppu21I YACGTR 1 cut(s) 989
PpuMI RGGWCCY 1 cut(s) 289
PscI ACATGT 1 cut(s) 1269
Psp5II RGGWCCY 1 cut(s) 289
Psp6I CCWGG 3 cut(s) 342, 529, 1353
PspCI CACGTG 1 cut(s) 989
PspGI CCWGG 3 cut(s) 342, 529, 1353
PspN4I GGNNCC 8 cut(s) 40, 72, 78, 113, 276, 290, 528, 822
PspPI GGNCC 2 cut(s) 121, 289
PspPPI RGGWCCY 1 cut(s) 289
PstI CTGCAG 1 cut(s) 487
PstNI CAGNNNCTG 1 cut(s) 1265
PsyI GACNNNGTC 1 cut(s) 506
RsaI GTAC 5 cut(s) 365, 521, 561, 865, 1082
RsaNI GTAC 5 cut(s) 364, 520, 560, 864, 1081
RseI CAYNNNNRTG 2 cut(s) 371, 377
SalI GTCGAC 1 cut(s) 259
SaqAI TTAA 3 cut(s) 1022, 1092, 1341
SatI GCNGC 4 cut(s) 483, 486, 792, 807
Sau3AI GATC 2 cut(s) 3, 171
Sau96I GGNCC 2 cut(s) 121, 289
SchI GAGTC 1 cut(s) 266
ScrFI CCNGG 5 cut(s) 116, 344, 524, 531, 1355
SfaNI GCATC 5 cut(s) 369, 485, 609, 724, 943
SfcI CTRYAG 2 cut(s) 447, 483
SinI GGWCC 1 cut(s) 289
SmiMI CAYNNNNRTG 2 cut(s) 371, 377
Sse9I AATT 7 cut(s) 227, 312, 429, 566, 649, 799, 1338
SsiI CCGC 3 cut(s) 271, 806, 1084
SspI AATATT 1 cut(s) 472
SspMI CTAG 1 cut(s) 1194
StyD4I CCNGG 5 cut(s) 114, 342, 522, 529, 1353
StyI CCWWGG 1 cut(s) 390
TaaI ACNGT 5 cut(s) 451, 559, 661, 1163, 1202
TaiI ACGT 2 cut(s) 108, 991
TaqI TCGA 5 cut(s) 260, 1042, 1073, 1135, 1311
TasI AATT 7 cut(s) 227, 312, 429, 566, 649, 799, 1338
TatI WGTACW 3 cut(s) 363, 559, 863
TauI GCSGC 1 cut(s) 809
TfiI GAWTC 3 cut(s) 152, 924, 1070
Tru1I TTAA 3 cut(s) 1022, 1092, 1341
Tru9I TTAA 3 cut(s) 1022, 1092, 1341
TscAI CASTG 6 cut(s) 562, 584, 664, 988, 1009, 1207
TseFI GTSAC 1 cut(s) 745
TseI GCWGC 3 cut(s) 482, 485, 791
Tsp45I GTSAC 1 cut(s) 745
TspDTI ATGAA 4 cut(s) 81, 238, 423, 823
TspGWI ACGGA 2 cut(s) 35, 830
TspRI CASTG 6 cut(s) 562, 584, 664, 988, 1009, 1207
Tth111I GACNNNGTC 1 cut(s) 506
VpaK11BI GGWCC 1 cut(s) 289
XapI RAATTY 4 cut(s) 227, 429, 566, 799
XceI RCATGY 3 cut(s) 741, 1226, 1273
XcmI CCANNNNNNNNNTGG 1 cut(s) 199
XmiI GTMKAC 2 cut(s) 260, 1284
XmnI GAANNNNTTC 1 cut(s) 430
XspI CTAG 1 cut(s) 1194
Zsp2I ATGCAT 1 cut(s) 739
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.