Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0001226

Physical Location & Seq

Genomic Coordinates Reverse (-)

31176500 .. 31180212

Gene Structure 3713 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG280500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1023 bp

ATGTATACAGACATGGTGATGCTTCAAACTATGGACATCATTTTCTACGAAGCACAGAGGCAAGGAAGAATTTCATTTTATCTGACTACAGTTGGTGAAGAAGCCATCAACATTGCATCTGCTGCAGCACTCACCTTTGATGACATTGTCCTTCCTCAGTACAGGGAGCCAGGTGTTTTAATATGGCGTGGTTTCACTGTACAAGAATTTGCAAACCAGTGTTTCAGTAACAAAGCTGATTACGGGAAAGGCAGGCAGATGCCAATCCATTATGGGTCTAACAAGCACAATTACTTCACTGTAGCATCAACCGTGGCTACACAACTTCCGCAGGCTGTTGGTGTTGCTTATTCTCTAAAAATGGACAGAAAAGATGCATGTGTGGTCACATATGTTGGTGATGGTGGCACAAGCGAGGGTGACTTCCATGCTGCTCTAAATTTTGCGGCTGTTACGGAGGCTCCAGTTATATTCATTTGTCGGAACAACGGATGGGCTATCAGTACACCCACTTCAGACCAGTTTCGGAGTGATGGTGTTGTTGTCAAAGGTCGGGCTTATGGAATCCGTAGTATCCGAGTAGATGGGAATGATGCACTTGCCATGTATAGTGCAGTTTATGCTGCACGCGAAATGGCAATCAGTGAACAGAGACCAATCTTAATAGAGGCATTAACATATCGAGTTGGACACCATTCCACATCAGATGATTCGACCAAGTATCGCCCAGTTGATGAGATTGAATTATGGAAAGTGGAACGAGACCCAGTAACTCGATTTAGAAAATGGATAGAAAGAAATGGTTGGTGGAGTGGTGAGGCAGAGATAGAGGCTAGAAACAGTGCGAGAAAGCAGATATTACATGCAATCCAAGAAGCTGAAAAAGTTGAGAAGCCACCAATTGCTGACATGTTCACTGATGTATACGACTGTCCTCCTTCCAATCTTGTTGAGCAGGAGAAACGGCTAAGAGAGACAATTAAGAGACACCCCCAGGATTACCCATCTGATGTTCCTGTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003826 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005759 GO:0006082 GO:0006520 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009063 GO:0009081 GO:0009083 GO:0009987 GO:0016054 GO:0016491 GO:0017086 GO:0019752 GO:0031974 GO:0032991 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043436 GO:0044237 GO:0044238 GO:0044248 GO:0044281 GO:0044282 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0046395 GO:0055114 GO:0070013 GO:0071704 GO:0098798 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko00280 ko00640 ko01100 ko01110 ko01130 map00280 map00640 map01100 map01110 map01130

Pfam Domains

Protein Families

E1_dh

Protein Analysis

340

Amino Acids

38.43

Weight (kDa)

5.6

Isoelectric Point (pI)

47.16

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
E1_dh	PF00676	4 - 300	7.3e-95	Dehydrogenase E1 component

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0001226)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G21400 AT1G21400 AT1G21400 AT1G21400 AT1G21400 AT1G21400 AT5G09300 AT5G09300 AT5G09300 AT5G09300
fragaria_vesca	FvH4_1g24490 FvH4_1g24490 FvH4_1g24490 FvH4_1g24490 FvH4_1g24490 FvH4_1g24490 FvH4_1g24490 FvH4_1g24490 FvH4_1g24490
malus_domestica	MD01G1005600.v1.1 MD15G1133900.v1.1
prunus_persica	Prupe.4G272100_v2.0.a1
pyrus_communis	pycom01g01240 pycom15g12070
rosa_chinensis	RchiOBHm_Chr2g0121681 RchiOBHm_Chr2g0121691 RchiOBHm_Chr2g0121741 RchiOBHm_Chr2g0121751
rosa_laevigata	RLG00000018629 RLG00000018630
rosa_multiflora	Rmu_co8210604.1_g000001 Rmu_co8500107.1_g000001 Rmu_sc0000315.1_g000007 Rmu_sc0002194.1_g000001 Rmu_sc0002194.1_g000003
rosa_roxburghii	Rroxscaffold_2G00122230 Rroxscaffold_2G00122280 Rroxscaffold_2G00122300 Rroxscaffold_2G00122320
rosa_rugosa	Rorug02G0234000 Rorug02G0234100
rosa_samantha	Rh2AG290900 Rh2AG291100 Rh2AG291300 Rh2AG291400 Rh2BG301700 Rh2BG301900 Rh2CG280500 Rh2CG280700 Rh2DG315500 Rh2DG315600 Rh2DG315800 Rh2DG315900
rosa_wichuraiana	Rw2G023330 Rw2G023350 Rw2G023360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	2 cut(s)	5, 924
AccII	CGCG	1 cut(s)	630
AciI	CCGC	2 cut(s)	329, 446
AcsI	RAATTY	3 cut(s)	69, 206, 439
AcuI	CTGAAG	1 cut(s)	498
AfaI	GTAC	3 cut(s)	161, 201, 505
AflIII	ACRYGT	1 cut(s)	909
AgsI	TTSAA	2 cut(s)	26, 743
AjnI	CCWGG	2 cut(s)	169, 993
AluBI	AGCT	2 cut(s)	236, 878
AluI	AGCT	2 cut(s)	236, 878
Alw26I	GTCTC	4 cut(s)	646, 756, 968, 979
ApeKI	GCWGC	4 cut(s)	122, 125, 431, 623
ApoI	RAATTY	3 cut(s)	69, 206, 439
Asp700I	GAANNNNTTC	1 cut(s)	70
AsuHPI	GGTGA	6 cut(s)	28, 107, 124, 410, 431, 827
BarI	GAAGNNNNNNTAC	2 cut(s)	496, 528
BbvI	GCAGC	4 cut(s)	109, 137, 418, 610
BccI	CCATC	6 cut(s)	113, 395, 486, 527, 578, 1012
BceAI	ACGGC	1 cut(s)	980
BciT130I	CCWGG	2 cut(s)	171, 995
BciVI	GTATCC	1 cut(s)	584
BcoDI	GTCTC	4 cut(s)	646, 756, 968, 979
BfaI	CTAG	1 cut(s)	834
BfmI	CTRYAG	3 cut(s)	87, 123, 300
BfuI	GTATCC	1 cut(s)	584
BisI	GCNGC	5 cut(s)	123, 126, 432, 447, 624
BlsI	GCNGC	5 cut(s)	124, 127, 433, 448, 625
Bme1390I	CCNGG	2 cut(s)	171, 995
BmiI	GGNNCC	2 cut(s)	168, 462
BmrFI	CCNGG	2 cut(s)	171, 995
BmrI	ACTGGG	2 cut(s)	722, 761
BmsI	GCATC	6 cut(s)	9, 125, 249, 314, 364, 583
BmuI	ACTGGG	2 cut(s)	722, 761
BpmI	CTGGAG	1 cut(s)	447
BsaBI	GATNNNNATC	1 cut(s)	263
BsaI	GGTCTC	2 cut(s)	646, 756
BsaJI	CCNNGG	2 cut(s)	312, 993
BsaXI	ACNNNNNCTCC	4 cut(s)	445, 475, 520, 550
Bse1I	ACTGG	5 cut(s)	217, 464, 520, 728, 767
Bse3DI	GCAATG	1 cut(s)	111
Bse8I	GATNNNNATC	1 cut(s)	263
BseBI	CCWGG	2 cut(s)	171, 995
BseDI	CCNNGG	2 cut(s)	312, 993
BseGI	GGATG	1 cut(s)	497
BseJI	GATNNNNATC	1 cut(s)	263
BseMI	GCAATG	1 cut(s)	111
BseMII	CTCAG	1 cut(s)	170
BseNI	ACTGG	5 cut(s)	217, 464, 520, 728, 767
BseXI	GCAGC	4 cut(s)	109, 137, 418, 610
BsgI	GTGCAG	2 cut(s)	609, 633
Bsh1236I	CGCG	1 cut(s)	630
BsmAI	GTCTC	4 cut(s)	646, 756, 968, 979
Bso31I	GGTCTC	2 cut(s)	646, 756
Bsp1407I	TGTACA	1 cut(s)	199
BspACI	CCGC	2 cut(s)	329, 446
BspCNI	CTCAG	1 cut(s)	169
BspFNI	CGCG	1 cut(s)	630
BspLI	GGNNCC	2 cut(s)	168, 462
BspMAI	CTGCAG	1 cut(s)	127
BspTNI	GGTCTC	2 cut(s)	646, 756
BsrDI	GCAATG	1 cut(s)	111
BsrGI	TGTACA	1 cut(s)	199
BsrI	ACTGG	5 cut(s)	217, 464, 520, 728, 767
BssECI	CCNNGG	2 cut(s)	312, 993
BssNAI	GTATAC	2 cut(s)	6, 925
Bst1107I	GTATAC	2 cut(s)	6, 925
Bst2UI	CCWGG	2 cut(s)	171, 995
Bst4CI	ACNGT	6 cut(s)	91, 199, 301, 313, 842, 932
BstAPI	GCANNNNNTGC	2 cut(s)	122, 620
BstAUI	TGTACA	1 cut(s)	199
BstC8I	GCNNGC	3 cut(s)	254, 333, 628
BstDEI	CTNAG	2 cut(s)	156, 968
BstDSI	CCRYGG	1 cut(s)	312
BstF5I	GGATG	1 cut(s)	497
BstFNI	CGCG	1 cut(s)	630
BstMAI	GTCTC	4 cut(s)	646, 756, 968, 979
BstMWI	GCNNNNNNNGC	2 cut(s)	122, 620
BstNI	CCWGG	2 cut(s)	171, 995
BstNSI	RCATGY	3 cut(s)	381, 866, 913
BstSCI	CCNGG	2 cut(s)	169, 993
BstSFI	CTRYAG	3 cut(s)	87, 123, 300
BstUI	CGCG	1 cut(s)	630
BstV1I	GCAGC	4 cut(s)	109, 137, 418, 610
BstZ17I	GTATAC	2 cut(s)	6, 925
BsuI	GTATCC	1 cut(s)	584
BtgI	CCRYGG	1 cut(s)	312
BtsCI	GGATG	1 cut(s)	497
BtsIMutI	CAGTG	6 cut(s)	195, 224, 297, 649, 847, 915
Cac8I	GCNNGC	3 cut(s)	254, 333, 628
Csp6I	GTAC	3 cut(s)	160, 200, 504
CviAII	CATG	6 cut(s)	13, 378, 428, 604, 863, 910
CviQI	GTAC	3 cut(s)	160, 200, 504
DdeI	CTNAG	2 cut(s)	156, 968
Eco31I	GGTCTC	2 cut(s)	646, 756
Eco57I	CTGAAG	1 cut(s)	498
EcoRII	CCWGG	2 cut(s)	169, 993
EcoT22I	ATGCAT	1 cut(s)	379
FaeI	CATG	6 cut(s)	16, 381, 431, 607, 866, 913
FatI	CATG	6 cut(s)	12, 377, 427, 603, 862, 909
FauNDI	CATATG	1 cut(s)	391
FblI	GTMKAC	2 cut(s)	5, 924
Fnu4HI	GCNGC	5 cut(s)	123, 126, 432, 447, 624
FokI	GGATG	1 cut(s)	504
Fsp4HI	GCNGC	5 cut(s)	123, 126, 432, 447, 624
FspBI	CTAG	1 cut(s)	834
GluI	GCNGC	5 cut(s)	123, 126, 432, 447, 624
GsuI	CTGGAG	1 cut(s)	447
Hin1II	CATG	6 cut(s)	16, 381, 431, 607, 866, 913
HinfI	GANTC	2 cut(s)	564, 710
HphI	GGTGA	6 cut(s)	28, 107, 124, 410, 431, 827
Hpy166II	GTNNAC	5 cut(s)	6, 506, 647, 915, 925
Hpy188I	TCNGA	7 cut(s)	84, 483, 517, 528, 578, 706, 1009
Hpy8I	GTNNAC	5 cut(s)	6, 506, 647, 915, 925
HpyAV	CCTTC	2 cut(s)	161, 948
HpyCH4III	ACNGT	6 cut(s)	91, 199, 301, 313, 842, 932
HpyCH4V	TGCA	8 cut(s)	116, 125, 212, 377, 596, 614, 626, 866
HpyF10VI	GCNNNNNNNGC	2 cut(s)	122, 620
HpyF3I	CTNAG	2 cut(s)	156, 968
Hsp92II	CATG	6 cut(s)	16, 381, 431, 607, 866, 913
LmnI	GCTCC	2 cut(s)	166, 466
Lsp1109I	GCAGC	4 cut(s)	109, 137, 418, 610
LweI	GCATC	6 cut(s)	9, 125, 249, 314, 364, 583
MaeI	CTAG	1 cut(s)	834
MaeIII	GTNAC	5 cut(s)	227, 385, 419, 451, 769
MboII	GAAGA	2 cut(s)	78, 110
MfeI	CAATTG	1 cut(s)	900
MluCI	AATT	7 cut(s)	69, 206, 289, 439, 743, 900, 978
MmeI	TCCRAC	2 cut(s)	461, 667
MnlI	CCTC	8 cut(s)	51, 165, 409, 451, 661, 811, 823, 945
Mph1103I	ATGCAT	1 cut(s)	379
MroXI	GAANNNNTTC	1 cut(s)	70
MseI	TTAA	4 cut(s)	179, 662, 674, 981
MslI	CAYNNNNRTG	1 cut(s)	17
MspR9I	CCNGG	2 cut(s)	171, 995
MunI	CAATTG	1 cut(s)	900
MvaI	CCWGG	2 cut(s)	171, 995
MvnI	CGCG	1 cut(s)	630
MwoI	GCNNNNNNNGC	2 cut(s)	122, 620
NdeI	CATATG	1 cut(s)	391
NlaIII	CATG	6 cut(s)	16, 381, 431, 607, 866, 913
NlaIV	GGNNCC	2 cut(s)	168, 462
NmuCI	GTSAC	2 cut(s)	385, 419
NsiI	ATGCAT	1 cut(s)	379
NspI	RCATGY	3 cut(s)	381, 866, 913
PciI	ACATGT	1 cut(s)	909
PdmI	GAANNNNTTC	1 cut(s)	70
PfeI	GAWTC	2 cut(s)	564, 710
PflFI	GACNNNGTC	1 cut(s)	146
PkrI	GCNGC	5 cut(s)	124, 127, 433, 448, 625
PscI	ACATGT	1 cut(s)	909
Psp6I	CCWGG	2 cut(s)	169, 993
PspGI	CCWGG	2 cut(s)	169, 993
PspN4I	GGNNCC	2 cut(s)	168, 462
PstI	CTGCAG	1 cut(s)	127
PsyI	GACNNNGTC	1 cut(s)	146
RsaI	GTAC	3 cut(s)	161, 201, 505
RsaNI	GTAC	3 cut(s)	160, 200, 504
RseI	CAYNNNNRTG	1 cut(s)	17
SaqAI	TTAA	4 cut(s)	179, 662, 674, 981
SatI	GCNGC	5 cut(s)	123, 126, 432, 447, 624
ScrFI	CCNGG	2 cut(s)	171, 995
SetI	ASST	5 cut(s)	137, 175, 238, 553, 880
SfaNI	GCATC	6 cut(s)	9, 125, 249, 314, 364, 583
SfcI	CTRYAG	3 cut(s)	87, 123, 300
SmiMI	CAYNNNNRTG	1 cut(s)	17
Sse9I	AATT	7 cut(s)	69, 206, 289, 439, 743, 900, 978
SsiI	CCGC	2 cut(s)	329, 446
SspMI	CTAG	1 cut(s)	834
StyD4I	CCNGG	2 cut(s)	169, 993
TaaI	ACNGT	6 cut(s)	91, 199, 301, 313, 842, 932
TaqI	TCGA	3 cut(s)	682, 713, 775
TasI	AATT	7 cut(s)	69, 206, 289, 439, 743, 900, 978
TatI	WGTACW	3 cut(s)	159, 199, 503
TauI	GCSGC	1 cut(s)	449
TfiI	GAWTC	2 cut(s)	564, 710
Tru1I	TTAA	4 cut(s)	179, 662, 674, 981
Tru9I	TTAA	4 cut(s)	179, 662, 674, 981
TscAI	CASTG	6 cut(s)	202, 224, 304, 649, 847, 922
TseFI	GTSAC	2 cut(s)	385, 419
TseI	GCWGC	4 cut(s)	122, 125, 431, 623
Tsp45I	GTSAC	2 cut(s)	385, 419
TspDTI	ATGAA	2 cut(s)	63, 463
TspGWI	ACGGA	3 cut(s)	470, 504, 557
TspRI	CASTG	6 cut(s)	202, 224, 304, 649, 847, 922
Tth111I	GACNNNGTC	1 cut(s)	146
XapI	RAATTY	3 cut(s)	69, 206, 439
XceI	RCATGY	3 cut(s)	381, 866, 913
XmiI	GTMKAC	2 cut(s)	5, 924
XmnI	GAANNNNTTC	1 cut(s)	70
XspI	CTAG	1 cut(s)	834
Zsp2I	ATGCAT	1 cut(s)	379

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.